ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal15i10 |
|---|---|
| Clone Library Name | barley_pub |
>RPOB_CHAGL (Q8MA12) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta subunit) (RNA polymerase beta subunit) Length = 1070 Score = 33.5 bits (75), Expect = 0.24 Identities = 16/50 (32%), Positives = 23/50 (46%) Frame = +1 Query: 199 HDSPITNTASSISKITLPQSAPRVLGVGQLLESALHVAGQVAGASVSTSP 348 HD P +SI + P P + VGQ+LE L AG+ + +P Sbjct: 837 HDMPYLQNGTSIDMVLSPLGVPSRMNVGQILECLLGFAGKFLNKNYRITP 886
>CG11_CANAL (P24866) G1/S-specific cyclin CLN1| Length = 646 Score = 32.0 bits (71), Expect = 0.70 Identities = 28/79 (35%), Positives = 36/79 (45%), Gaps = 9/79 (11%) Frame = +1 Query: 55 EMFTPEEVPLFGSNSALDWANFHAQ---------AFSDESLSFDEECSRTSSVDGGLHDS 207 ++FTP+ F SNS+L N H Q A S SL F + +RT GL+ + Sbjct: 497 QLFTPKSPNAFSSNSSLT-LNNHPQSMVPVTPPSATSQYSL-FSNKNNRTHESTSGLNST 554 Query: 208 PITNTASSISKITLPQSAP 264 T T SIS PQ P Sbjct: 555 CNTPTHISISSFAPPQPPP 573
>KCC2B_HUMAN (Q13554) Calcium/calmodulin-dependent protein kinase type II beta| chain (EC 2.7.11.17) (CaM-kinase II beta chain) (CaM kinase II beta subunit) (CaMK-II beta subunit) Length = 664 Score = 31.6 bits (70), Expect = 0.91 Identities = 16/41 (39%), Positives = 19/41 (46%) Frame = -1 Query: 395 PDPRASH*LVIVPYGRGEVETDAPATWPATCSADSSN*PTP 273 P PR S L V G G E +AP WP C + + P P Sbjct: 488 PSPRISDILNSVRRGSGTPEAEAPRQWPPPCPSPTIPGPLP 528
>RPOB_GRATL (Q6B8R8) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta subunit) (RNA polymerase beta subunit) Length = 1120 Score = 31.2 bits (69), Expect = 1.2 Identities = 23/83 (27%), Positives = 32/83 (38%), Gaps = 5/83 (6%) Frame = +1 Query: 196 LHDSPITNTASSISKITLPQSAPRVLGVGQLLESALHVAGQVAGASVSTSPLP--YGTMT 369 L D P + + I P P + VGQL E L +AG+ + P YG+ Sbjct: 875 LQDMPFLPDGTPVDIILNPLGVPSRMNVGQLFECLLGLAGEYSSKRFKIIPFDEMYGSEA 934 Query: 370 SQC---EALGSGTRKKLSSWLVN 429 S+ L + SWL N Sbjct: 935 SRALVYNKLKQASSMNDKSWLFN 957
>IPYR_CAEEL (Q18680) Probable inorganic pyrophosphatase (EC 3.6.1.1)| (Pyrophosphate phospho-hydrolase) (PPase) Length = 407 Score = 31.2 bits (69), Expect = 1.2 Identities = 17/68 (25%), Positives = 37/68 (54%) Frame = +1 Query: 214 TNTASSISKITLPQSAPRVLGVGQLLESALHVAGQVAGASVSTSPLPYGTMTSQCEALGS 393 T+++++ K +++ V V Q+ SA+H +G+S P P G++T+ S Sbjct: 25 TSSSNTSQKWATSRTSRPVTNVTQV--SAIHTTSMDSGSSTVQLPSPRGSLTTAVSTSSS 82 Query: 394 GTRKKLSS 417 G ++++S+ Sbjct: 83 GAQRQMSA 90
>SORC_KLEPN (P37078) Sorbitol operon regulator (Sor operon activator)| Length = 315 Score = 30.8 bits (68), Expect = 1.6 Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 6/90 (6%) Frame = +1 Query: 88 GSNSALDWANFHAQAFSDESLSFDEE------CSRTSSVDGGLHDSPITNTASSISKITL 249 GS + D AN+HA S+ES + CSR ++GGL D+ ++ SI L Sbjct: 213 GSPAIRDGANWHAFYGSEESDDLNARHVAGDICSRFYDINGGLVDTNMSEKTLSIEMAKL 272 Query: 250 PQSAPRVLGVGQLLESALHVAGQVAGASVS 339 Q A +G+ E + G + G ++ Sbjct: 273 RQ-ARYSIGIAMGEEKYSGILGALHGRYIN 301
>RPOB_CHLPN (Q9Z9A0) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1252 Score = 30.4 bits (67), Expect = 2.0 Identities = 15/47 (31%), Positives = 23/47 (48%) Frame = +1 Query: 202 DSPITNTASSISKITLPQSAPRVLGVGQLLESALHVAGQVAGASVST 342 D P + ++ I P P + +GQ+LE+ L A + AG V T Sbjct: 1046 DMPYLSNGETVQMILNPLGVPSRMNLGQVLETHLGYAAKTAGIYVKT 1092
>G6PI_HALSA (Q9HNQ6) Probable glucose-6-phosphate isomerase (EC 5.3.1.9) (GPI)| (Phosphoglucose isomerase) (PGI) (Phosphohexose isomerase) (PHI) Length = 426 Score = 30.4 bits (67), Expect = 2.0 Identities = 25/107 (23%), Positives = 42/107 (39%), Gaps = 13/107 (12%) Frame = +1 Query: 130 AFSDESLSFDEECSRTSSVDGGL------HDSPITNTA-------SSISKITLPQSAPRV 270 A D + + T+ DG L HD P+ + +++S + LP +A Sbjct: 147 AMDDAGVDWTARTLVTTGDDGPLRALADTHDLPVLDAPRGVPGRFAALSTVALPAAAIAG 206 Query: 271 LGVGQLLESALHVAGQVAGASVSTSPLPYGTMTSQCEALGSGTRKKL 411 + VG+L+ A +AG+ S YG + G+G L Sbjct: 207 VDVGELVAGAADGRAALAGSLEDCSAYAYGATAYALDQRGAGVNAML 253
>RPOB_PARUW (Q6MDM1) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1254 Score = 30.4 bits (67), Expect = 2.0 Identities = 15/47 (31%), Positives = 24/47 (51%) Frame = +1 Query: 202 DSPITNTASSISKITLPQSAPRVLGVGQLLESALHVAGQVAGASVST 342 D P +T +I I P P + +GQL E+ L +A + G +V + Sbjct: 1047 DMPFLSTGQTIEIILNPLGVPSRMNMGQLFETHLGIAAKHTGITVKS 1093
>RPOB_CHLTR (O84317) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1252 Score = 29.6 bits (65), Expect = 3.5 Identities = 15/47 (31%), Positives = 22/47 (46%) Frame = +1 Query: 202 DSPITNTASSISKITLPQSAPRVLGVGQLLESALHVAGQVAGASVST 342 D P ++ I P P + +GQ+LE+ L A + AG V T Sbjct: 1046 DMPFLANGETVQMILNPLGVPSRMNLGQVLETHLGYAAKTAGIYVKT 1092
>RPOB_CHLTA (Q3KM47) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1252 Score = 29.6 bits (65), Expect = 3.5 Identities = 15/47 (31%), Positives = 22/47 (46%) Frame = +1 Query: 202 DSPITNTASSISKITLPQSAPRVLGVGQLLESALHVAGQVAGASVST 342 D P ++ I P P + +GQ+LE+ L A + AG V T Sbjct: 1046 DMPFLANGETVQMILNPLGVPSRMNLGQVLETHLGYAAKTAGIYVKT 1092
>RPOB_CHLMU (P56869) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1252 Score = 29.6 bits (65), Expect = 3.5 Identities = 15/47 (31%), Positives = 22/47 (46%) Frame = +1 Query: 202 DSPITNTASSISKITLPQSAPRVLGVGQLLESALHVAGQVAGASVST 342 D P ++ I P P + +GQ+LE+ L A + AG V T Sbjct: 1046 DMPFLANGETVQMILNPLGVPSRMNLGQVLETHLGYAAKTAGIYVKT 1092
>RPOB_CHLCV (Q822J1) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1252 Score = 29.6 bits (65), Expect = 3.5 Identities = 15/47 (31%), Positives = 22/47 (46%) Frame = +1 Query: 202 DSPITNTASSISKITLPQSAPRVLGVGQLLESALHVAGQVAGASVST 342 D P ++ I P P + +GQ+LE+ L A + AG V T Sbjct: 1046 DMPYLANGETVQMILNPLGVPSRMNLGQVLETHLGYAAKTAGIHVKT 1092
>RPOB_CHLAB (Q5L5I3) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1252 Score = 29.6 bits (65), Expect = 3.5 Identities = 15/47 (31%), Positives = 22/47 (46%) Frame = +1 Query: 202 DSPITNTASSISKITLPQSAPRVLGVGQLLESALHVAGQVAGASVST 342 D P ++ I P P + +GQ+LE+ L A + AG V T Sbjct: 1046 DMPYLANGETVQMILNPLGVPSRMNLGQVLETHLGYAAKTAGIHVKT 1092
>JHD1B_XENLA (Q640I9) JmjC domain-containing histone demethylation protein 1B (EC| 1.14.11.-) (F-box/LRR-repeat protein 10) (F-box and leucine-rich repeat protein 10) Length = 1259 Score = 29.6 bits (65), Expect = 3.5 Identities = 18/44 (40%), Positives = 22/44 (50%) Frame = +2 Query: 209 QLQILLAPYPRLRFLNLLPVSWVLVSCLNRRCM*LARLQGHQFL 340 QL L+ P LR LNL SW+ VS L C L R Q++ Sbjct: 1063 QLSWLINRLPALRDLNLSGCSWIAVSALCSSCCPLLRTLNVQWV 1106
>RPOB_CHLTE (Q8KG15) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1303 Score = 29.6 bits (65), Expect = 3.5 Identities = 17/64 (26%), Positives = 26/64 (40%) Frame = +1 Query: 196 LHDSPITNTASSISKITLPQSAPRVLGVGQLLESALHVAGQVAGASVSTSPLPYGTMTSQ 375 + D P + + + P P + +GQL E++L AG+ G T T T Sbjct: 1095 IEDMPFMEDGTPVDIVLNPLGVPSRMNIGQLYETSLGWAGKKLGVKFKTPIFSGATYTEV 1154 Query: 376 CEAL 387 E L Sbjct: 1155 QEYL 1158
>RPOBC_WOLSU (Q7MA56) Bifunctional DNA-directed RNA polymerase, beta and beta'| chain (EC 2.7.7.6) [Includes: DNA-directed RNA polymerase beta chain (Transcriptase beta chain) (RNA polymerase beta subunit); DNA-directed RNA polymerase beta' chain (Transcri Length = 2883 Score = 29.6 bits (65), Expect = 3.5 Identities = 13/46 (28%), Positives = 22/46 (47%) Frame = +1 Query: 202 DSPITNTASSISKITLPQSAPRVLGVGQLLESALHVAGQVAGASVS 339 D P T + + P P + +GQ+LE L + G+ GA ++ Sbjct: 1114 DMPYTKDGEPVEIVLNPLGVPSRMNIGQILEVHLGLVGKKLGAQIN 1159
>STE5_YEAST (P32917) Protein STE5| Length = 917 Score = 29.6 bits (65), Expect = 3.5 Identities = 18/65 (27%), Positives = 27/65 (41%) Frame = +1 Query: 118 FHAQAFSDESLSFDEECSRTSSVDGGLHDSPITNTASSISKITLPQSAPRVLGVGQLLES 297 F S + SF + TSS G D + NT S++S LPQ R + + + Sbjct: 68 FSPSPISSSTFSFSPKSRVTSSNSSGNEDGNLMNTPSTVSTDYLPQHPHRTSSLPRPNSN 127 Query: 298 ALHVA 312 H + Sbjct: 128 LFHAS 132
>ITAM_MOUSE (P05555) Integrin alpha-M precursor (Cell surface glycoprotein| MAC-1 alpha subunit) (CR-3 alpha chain) (Leukocyte adhesion receptor MO1) (CD11b antigen) Length = 1153 Score = 29.3 bits (64), Expect = 4.5 Identities = 16/37 (43%), Positives = 18/37 (48%) Frame = +1 Query: 286 LLESALHVAGQVAGASVSTSPLPYGTMTSQCEALGSG 396 +L A H + G VS PLP G QCEAL G Sbjct: 475 ILIGAPHYYEKTRGGQVSVCPLPRGRARWQCEALLHG 511
>HIS6_DESVH (P62450) Imidazole glycerol phosphate synthase subunit hisF (EC| 4.1.3.-) (IGP synthase cyclase subunit) (IGP synthase subunit hisF) (ImGP synthase subunit hisF) (IGPS subunit hisF) Length = 259 Score = 29.3 bits (64), Expect = 4.5 Identities = 26/90 (28%), Positives = 38/90 (42%) Frame = +1 Query: 100 ALDWANFHAQAFSDESLSFDEECSRTSSVDGGLHDSPITNTASSISKITLPQSAPRVLGV 279 A++WA + ESL E C + DG +T T +T+P A G Sbjct: 159 AIEWAK------TCESLGAGELCVNSIDADGTKDGYELTLTRMISDAVTIPVIASGGAGS 212 Query: 280 GQLLESALHVAGQVAGASVSTSPLPYGTMT 369 + + AL G A A++ S + YGT T Sbjct: 213 PEHMYDALTRGG--ASAALIASIVHYGTYT 240
>RPOB_MESFL (Q6F0L7) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1284 Score = 28.9 bits (63), Expect = 5.9 Identities = 13/49 (26%), Positives = 24/49 (48%) Frame = +1 Query: 196 LHDSPITNTASSISKITLPQSAPRVLGVGQLLESALHVAGQVAGASVST 342 + D P + + + PQ P + +GQ+LE L +A + G ++T Sbjct: 1016 VEDMPHLEDGTPVDILLNPQGIPSRMNIGQILEIHLGMAAKKLGVKIAT 1064
>RPOB_NYMAL (Q6EW56) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta subunit) (RNA polymerase beta subunit) Length = 1071 Score = 28.9 bits (63), Expect = 5.9 Identities = 13/49 (26%), Positives = 22/49 (44%) Frame = +1 Query: 202 DSPITNTASSISKITLPQSAPRVLGVGQLLESALHVAGQVAGASVSTSP 348 D P + + + P P + VGQ+ E +L +AG + G +P Sbjct: 839 DMPYLQDGTPVDMVFNPLGVPSRMNVGQMFECSLGLAGDLLGRHYRITP 887
>RPOB_DEHSC (Q3ZX01) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1273 Score = 28.9 bits (63), Expect = 5.9 Identities = 15/54 (27%), Positives = 26/54 (48%) Frame = +1 Query: 181 SVDGGLHDSPITNTASSISKITLPQSAPRVLGVGQLLESALHVAGQVAGASVST 342 S+ + D P + + + P P + +GQ+LE+ L AG + G V+T Sbjct: 905 SIIAPVEDMPYLPDGTPVDVVLNPIGVPSRMNLGQILETHLGWAGHLLGFRVAT 958
>RPOB_MESVI (Q9MUS5) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta subunit) (RNA polymerase beta subunit) Length = 1080 Score = 28.9 bits (63), Expect = 5.9 Identities = 21/81 (25%), Positives = 31/81 (38%), Gaps = 5/81 (6%) Frame = +1 Query: 202 DSPITNTASSISKITLPQSAPRVLGVGQLLESALHVAGQVAGASVSTSPLP--YGTMTSQ 375 D P + + + P P + VGQ+ E L +AG+ + P YG TS+ Sbjct: 846 DMPYLQDGTPVDMVLNPLGVPSRMNVGQVFECLLGLAGEYLSENYKLMPFDEMYGKETSR 905 Query: 376 ---CEALGSGTRKKLSSWLVN 429 L +K WL N Sbjct: 906 GLVYSKLYEARQKTGYPWLFN 926
>RPOB2_CHLRE (Q8HTL7) DNA-directed RNA polymerase beta chain C-terminal subunit| (EC 2.7.7.6) (PEP) (Plastid-encoded RNA polymerase beta C-terminal section) (RNA polymerase beta subunit C-terminal section) Length = 626 Score = 28.9 bits (63), Expect = 5.9 Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 5/81 (6%) Frame = +1 Query: 202 DSPITNTASSISKITLPQSAPRVLGVGQLLESALHVAGQVAGASVSTSPLP--YGTMTSQ 375 D P +++ + P P + VGQ+ E L +AG+ G P YG S+ Sbjct: 350 DMPFLPDGAAVDIVLNPLGVPSRMNVGQIYECLLGLAGRYLGEHYKIPPFDEMYGADASR 409 Query: 376 CEALGS--GTRKKLS-SWLVN 429 L RKK WL++ Sbjct: 410 SFVLSKLYEARKKTGLKWLLD 430
>RPOB_DEHE1 (Q3Z8V4) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1272 Score = 28.9 bits (63), Expect = 5.9 Identities = 15/54 (27%), Positives = 26/54 (48%) Frame = +1 Query: 181 SVDGGLHDSPITNTASSISKITLPQSAPRVLGVGQLLESALHVAGQVAGASVST 342 S+ + D P + + + P P + +GQ+LE+ L AG + G V+T Sbjct: 905 SIIAPVEDMPYLPDGTPVDVVLNPIGVPSRMNLGQILETHLGWAGHLLGFRVAT 958
>NAT1_YEAST (P12945) N-terminal acetyltransferase 1 (EC 2.3.1.88)| (Amino-terminal, alpha-amino, acetyltransferase 1) Length = 853 Score = 28.5 bits (62), Expect = 7.7 Identities = 13/40 (32%), Positives = 22/40 (55%) Frame = +1 Query: 34 ALAKELTEMFTPEEVPLFGSNSALDWANFHAQAFSDESLS 153 +L KE +E F E+ SN++ DW NF+ + F ++ Sbjct: 775 SLEKEYSENFPLNEI----SNNSFDWLNFYQEKFGKNDIN 810
>RPOB_LACSS (Q38UQ2) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1197 Score = 28.5 bits (62), Expect = 7.7 Identities = 14/47 (29%), Positives = 23/47 (48%) Frame = +1 Query: 202 DSPITNTASSISKITLPQSAPRVLGVGQLLESALHVAGQVAGASVST 342 D P T + + + P P + +GQ+LE L +A + G V+T Sbjct: 940 DMPYTPDGTPVDILLSPMGVPSRMNIGQVLELHLGMAARNLGIHVAT 986
>RPOB_PSEAK (Q3ZJ93) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta subunit) (RNA polymerase beta subunit) Length = 2178 Score = 28.5 bits (62), Expect = 7.7 Identities = 24/89 (26%), Positives = 34/89 (38%), Gaps = 10/89 (11%) Frame = +1 Query: 202 DSPITNTASSISKITLPQSAPRVLGVGQLLESALHVAGQVAGASVSTSPLP--YGTMTSQ 375 D P + + + + P P + VGQ+LE L +AG + P YG Sbjct: 1945 DMPYLSDGTPLDIVLNPLGVPSRMNVGQILECLLGMAGYYLKQNFKIQPFDEIYG----- 1999 Query: 376 CEALGSGTRKKL--------SSWLVNGHN 438 CEA S KL WL N ++ Sbjct: 2000 CEASRSLVYSKLYEARIKTGQDWLFNANH 2028
>GUNB_PSEFL (P18126) Endoglucanase B precursor (EC 3.2.1.4)| (Endo-1,4-beta-glucanase) (Cellulase) (EGB) Length = 511 Score = 28.5 bits (62), Expect = 7.7 Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 9/83 (10%) Frame = +1 Query: 175 TSSVDGGLHDSPITNTASSISKITLPQSAPRVLGVGQLLESALHVAGQVAGASVSTSPLP 354 T ++ GG S ++ ASS S ++ S PR S+ V+ V G S S+S Sbjct: 123 TGAICGGQGSSAPSSVASSSSSSSVVSSTPR--------SSSSSVSSSVPGTSSSSSSSV 174 Query: 355 ---------YGTMTSQCEALGSG 396 YGT+T C +G Sbjct: 175 LTGAQACNWYGTLTPLCNNTSNG 197 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.309 0.125 0.353 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 72,228,672 Number of Sequences: 219361 Number of extensions: 1610567 Number of successful extensions: 3184 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 3110 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3184 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2628831825 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits)
