ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal15h22 |
|---|---|
| Clone Library Name | barley_pub |
>emb|X83881.1|HCTTSAMDC H.chilense x T.turgidum conv. durum (Tritordeum) mRNA for S-adenosylmethionine decarboxylase Length = 1893 Score = 99.6 bits (50), Expect = 2e-18 Identities = 65/70 (92%) Strand = Plus / Plus Query: 1 ggtggtttgctgcgtctgccacaatgagcgtactgtttggagaaaatctgtcacaactta 60 ||||||||||||||||||||||||||||| |||||||||||||| | || ||||||||| Sbjct: 1816 ggtggtttgctgcgtctgccacaatgagcatactgtttggagaagagttggcacaactta 1875 Query: 61 taaataagca 70 |||||||||| Sbjct: 1876 taaataagca 1885
>gb|AF235103.5| Homo sapiens chromosome 8 multiple clones map q24.3, complete sequence Length = 345524 Score = 44.1 bits (22), Expect = 0.12 Identities = 28/30 (93%) Strand = Plus / Minus Query: 95 tcctactgcattcctttctgctcaaatcat 124 ||||||| |||||||||||||| ||||||| Sbjct: 331013 tcctactacattcctttctgctgaaatcat 330984 Score = 44.1 bits (22), Expect = 0.12 Identities = 28/30 (93%) Strand = Plus / Minus Query: 95 tcctactgcattcctttctgctcaaatcat 124 ||||||| |||||||||||||| ||||||| Sbjct: 324433 tcctactacattcctttctgctgaaatcat 324404
>emb|AL596122.14| Mouse DNA sequence from clone RP23-320E6 on chromosome 11 Contains the Taf15 gene for TAF15 RNA polymerase II TATA box binding protein (TBP)-associated factor, two novel genes, the Ccl5, Ccl9, Ccl6, Ccl3 and Ccl4 genes for chemokine (C-C motif) ligand 5, 9, 6, 3 and 4, a ribosomal protein L9 (Rpl9) pseudogene, three extracellular proteinase inhibitor (Expi) pseudogene and an H+ transporting mitochondrial F1F0 complex ATP synthase subunit e (Atp5k) pseudogene,, complete sequence Length = 211873 Score = 44.1 bits (22), Expect = 0.12 Identities = 22/22 (100%) Strand = Plus / Plus Query: 94 gtcctactgcattcctttctgc 115 |||||||||||||||||||||| Sbjct: 109690 gtcctactgcattcctttctgc 109711
>gb|AC139103.3| Homo sapiens chromosome 8, clone, complete sequence Length = 166920 Score = 44.1 bits (22), Expect = 0.12 Identities = 28/30 (93%) Strand = Plus / Plus Query: 95 tcctactgcattcctttctgctcaaatcat 124 ||||||| |||||||||||||| ||||||| Sbjct: 60047 tcctactacattcctttctgctgaaatcat 60076 Score = 44.1 bits (22), Expect = 0.12 Identities = 28/30 (93%) Strand = Plus / Plus Query: 95 tcctactgcattcctttctgctcaaatcat 124 ||||||| |||||||||||||| ||||||| Sbjct: 50586 tcctactacattcctttctgctgaaatcat 50615
>gb|AC087815.6| Homo sapiens chromosome 8, clone RP5-1109M23, complete sequence Length = 77745 Score = 44.1 bits (22), Expect = 0.12 Identities = 28/30 (93%) Strand = Plus / Minus Query: 95 tcctactgcattcctttctgctcaaatcat 124 ||||||| |||||||||||||| ||||||| Sbjct: 63234 tcctactacattcctttctgctgaaatcat 63205 Score = 44.1 bits (22), Expect = 0.12 Identities = 28/30 (93%) Strand = Plus / Minus Query: 95 tcctactgcattcctttctgctcaaatcat 124 ||||||| |||||||||||||| ||||||| Sbjct: 56654 tcctactacattcctttctgctgaaatcat 56625
>gb|AY032614.1| Triticum aestivum receptor-like kinase (Wrlk-S3-9) gene, partial cds Length = 2389 Score = 44.1 bits (22), Expect = 0.12 Identities = 22/22 (100%) Strand = Plus / Minus Query: 40 gagaaaatctgtcacaacttat 61 |||||||||||||||||||||| Sbjct: 1286 gagaaaatctgtcacaacttat 1265
>dbj|AB051897.1| Mus musculus Scya6, Scya9, Scya16-ps, Scya5 genes for small inducible cytokine A6 precursor, small inducible cytokine A9 precursor, Scya16 pseudogene, small inducible cytokine A5 precursor, complete cds Length = 122436 Score = 44.1 bits (22), Expect = 0.12 Identities = 22/22 (100%) Strand = Plus / Minus Query: 94 gtcctactgcattcctttctgc 115 |||||||||||||||||||||| Sbjct: 49169 gtcctactgcattcctttctgc 49148
>gb|AF325197.1|AF325197 Triticum aestivum LRK33 (Lrk33) and TAK33 (Tak33) genes, complete cds Length = 20754 Score = 44.1 bits (22), Expect = 0.12 Identities = 22/22 (100%) Strand = Plus / Plus Query: 40 gagaaaatctgtcacaacttat 61 |||||||||||||||||||||| Sbjct: 8276 gagaaaatctgtcacaacttat 8297
>gb|AF325196.1|AF325196 Triticum aestivum PST19 (Pst19), LRR19 (Lrr19), TAK19-1 (Tak19-1), and LRK19 (Lrk19) genes, complete cds Length = 35872 Score = 44.1 bits (22), Expect = 0.12 Identities = 22/22 (100%) Strand = Plus / Minus Query: 40 gagaaaatctgtcacaacttat 61 |||||||||||||||||||||| Sbjct: 29636 gagaaaatctgtcacaacttat 29615
>emb|CR847994.10| Zebrafish DNA sequence from clone CH211-203H15 in linkage group 4, complete sequence Length = 100991 Score = 44.1 bits (22), Expect = 0.12 Identities = 22/22 (100%) Strand = Plus / Minus Query: 35 gtttggagaaaatctgtcacaa 56 |||||||||||||||||||||| Sbjct: 68561 gtttggagaaaatctgtcacaa 68540
>dbj|AP005976.2| Homo sapiens genomic DNA, chromosome 8qtel, clone: KB1585H8, complete sequence Length = 226221 Score = 44.1 bits (22), Expect = 0.12 Identities = 28/30 (93%) Strand = Plus / Minus Query: 95 tcctactgcattcctttctgctcaaatcat 124 ||||||| |||||||||||||| ||||||| Sbjct: 180077 tcctactacattcctttctgctgaaatcat 180048 Score = 44.1 bits (22), Expect = 0.12 Identities = 28/30 (93%) Strand = Plus / Minus Query: 95 tcctactgcattcctttctgctcaaatcat 124 ||||||| |||||||||||||| ||||||| Sbjct: 173497 tcctactacattcctttctgctgaaatcat 173468
>gb|AC147822.2| Xenopus tropicalis clone CH216-123D2, complete sequence Length = 166377 Score = 42.1 bits (21), Expect = 0.46 Identities = 21/21 (100%) Strand = Plus / Minus Query: 112 ctgctcaaatcatattttaat 132 ||||||||||||||||||||| Sbjct: 153733 ctgctcaaatcatattttaat 153713
>gb|AC132388.3| Mus musculus BAC clone RP23-443H3 from chromosome 3, complete sequence Length = 200490 Score = 42.1 bits (21), Expect = 0.46 Identities = 21/21 (100%) Strand = Plus / Plus Query: 100 ctgcattcctttctgctcaaa 120 ||||||||||||||||||||| Sbjct: 14298 ctgcattcctttctgctcaaa 14318
>gb|AC124370.3| Mus musculus BAC clone RP24-554F1 from chromosome 3, complete sequence Length = 181208 Score = 42.1 bits (21), Expect = 0.46 Identities = 21/21 (100%) Strand = Plus / Plus Query: 100 ctgcattcctttctgctcaaa 120 ||||||||||||||||||||| Sbjct: 132941 ctgcattcctttctgctcaaa 132961
>emb|AL606594.4| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0029H02, complete sequence Length = 173171 Score = 42.1 bits (21), Expect = 0.46 Identities = 21/21 (100%) Strand = Plus / Plus Query: 9 gctgcgtctgccacaatgagc 29 ||||||||||||||||||||| Sbjct: 13871 gctgcgtctgccacaatgagc 13891
>emb|Y07766.2|OSSADMEDC O.sativa mRNA for S-adenosylmethionine decarboxylase Length = 2036 Score = 42.1 bits (21), Expect = 0.46 Identities = 21/21 (100%) Strand = Plus / Plus Query: 9 gctgcgtctgccacaatgagc 29 ||||||||||||||||||||| Sbjct: 1930 gctgcgtctgccacaatgagc 1950
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 0.46 Identities = 21/21 (100%) Strand = Plus / Plus Query: 9 gctgcgtctgccacaatgagc 29 ||||||||||||||||||||| Sbjct: 24893286 gctgcgtctgccacaatgagc 24893306
>gb|AF067194.1|AF067194 Oryza sativa S-adenosylmethionine decarboxylase mRNA, complete cds Length = 1560 Score = 42.1 bits (21), Expect = 0.46 Identities = 21/21 (100%) Strand = Plus / Plus Query: 9 gctgcgtctgccacaatgagc 29 ||||||||||||||||||||| Sbjct: 1481 gctgcgtctgccacaatgagc 1501
>dbj|AK100589.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023106D22, full insert sequence Length = 2063 Score = 42.1 bits (21), Expect = 0.46 Identities = 21/21 (100%) Strand = Plus / Plus Query: 9 gctgcgtctgccacaatgagc 29 ||||||||||||||||||||| Sbjct: 1974 gctgcgtctgccacaatgagc 1994
>dbj|AK098918.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002M21, full insert sequence Length = 2059 Score = 42.1 bits (21), Expect = 0.46 Identities = 21/21 (100%) Strand = Plus / Plus Query: 9 gctgcgtctgccacaatgagc 29 ||||||||||||||||||||| Sbjct: 1974 gctgcgtctgccacaatgagc 1994
>dbj|AK072162.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013129L10, full insert sequence Length = 2711 Score = 42.1 bits (21), Expect = 0.46 Identities = 21/21 (100%) Strand = Plus / Plus Query: 9 gctgcgtctgccacaatgagc 29 ||||||||||||||||||||| Sbjct: 1974 gctgcgtctgccacaatgagc 1994
>dbj|AK067166.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013096P09, full insert sequence Length = 2063 Score = 42.1 bits (21), Expect = 0.46 Identities = 21/21 (100%) Strand = Plus / Plus Query: 9 gctgcgtctgccacaatgagc 29 ||||||||||||||||||||| Sbjct: 1974 gctgcgtctgccacaatgagc 1994
>dbj|AK062001.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-043-D05, full insert sequence Length = 1217 Score = 42.1 bits (21), Expect = 0.46 Identities = 21/21 (100%) Strand = Plus / Plus Query: 9 gctgcgtctgccacaatgagc 29 ||||||||||||||||||||| Sbjct: 1132 gctgcgtctgccacaatgagc 1152
>emb|AL442115.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0711G06, complete sequence Length = 148644 Score = 42.1 bits (21), Expect = 0.46 Identities = 21/21 (100%) Strand = Plus / Plus Query: 9 gctgcgtctgccacaatgagc 29 ||||||||||||||||||||| Sbjct: 13899 gctgcgtctgccacaatgagc 13919
>emb|AL606627.3|OSJN00052 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0067K08, complete sequence Length = 170765 Score = 42.1 bits (21), Expect = 0.46 Identities = 21/21 (100%) Strand = Plus / Plus Query: 9 gctgcgtctgccacaatgagc 29 ||||||||||||||||||||| Sbjct: 155002 gctgcgtctgccacaatgagc 155022
>emb|AL589693.3| Human DNA sequence from clone RP11-19F10 on chromosome 6 Contains a CpG island, complete sequence Length = 165203 Score = 40.1 bits (20), Expect = 1.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 112 ctgctcaaatcatattttaa 131 |||||||||||||||||||| Sbjct: 85460 ctgctcaaatcatattttaa 85441
>emb|AL158077.15| Human DNA sequence from clone RP11-471J7 on chromosome 9 Contains the 5' end of the SLC24A2 gene for solute carrier family 24 (sodium/potassium/calcium exchanger), member 2 (NCKX2) and a CpG island, complete sequence Length = 159900 Score = 40.1 bits (20), Expect = 1.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 38 tggagaaaatctgtcacaacttataaat 65 ||||||||| ||||||||||||| |||| Sbjct: 129030 tggagaaaaactgtcacaacttaaaaat 129003
>emb|AL591222.2|HS378I6 Homo sapiens chromosome 9 BAC RP11-378I6, complete sequence Length = 147211 Score = 40.1 bits (20), Expect = 1.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 38 tggagaaaatctgtcacaacttataaat 65 ||||||||| ||||||||||||| |||| Sbjct: 2540 tggagaaaaactgtcacaacttaaaaat 2513
>gb|AC140447.3| Mus musculus BAC clone RP23-53E23 from chromosome 9, complete sequence Length = 158157 Score = 38.2 bits (19), Expect = 7.1 Identities = 22/23 (95%) Strand = Plus / Plus Query: 115 ctcaaatcatattttaattctgt 137 ||||| ||||||||||||||||| Sbjct: 86518 ctcaactcatattttaattctgt 86540
>ref|XM_658084.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN5572.2), mRNA Length = 3198 Score = 38.2 bits (19), Expect = 7.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 3 tggtttgctgcgtctgcca 21 ||||||||||||||||||| Sbjct: 2363 tggtttgctgcgtctgcca 2345
>gb|AC183677.2| Pan troglodytes BAC clone CH251-520E8 from chromosome 9, complete sequence Length = 174731 Score = 38.2 bits (19), Expect = 7.1 Identities = 25/27 (92%) Strand = Plus / Plus Query: 95 tcctactgcattcctttctgctcaaat 121 ||||||| |||||||||||||| |||| Sbjct: 156205 tcctactacattcctttctgctaaaat 156231
>emb|AL844184.14| Mouse DNA sequence from clone RP23-284N18 on chromosome X, complete sequence Length = 148500 Score = 38.2 bits (19), Expect = 7.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 119 aatcatattttaattctgt 137 ||||||||||||||||||| Sbjct: 82245 aatcatattttaattctgt 82227
>gb|AC098879.3| Mus musculus BAC clone RP23-121N21 from X, complete sequence Length = 195929 Score = 38.2 bits (19), Expect = 7.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 119 aatcatattttaattctgt 137 ||||||||||||||||||| Sbjct: 66100 aatcatattttaattctgt 66082
>gb|AC146133.3| Pan troglodytes BAC clone RP43-38C10 from 7, complete sequence Length = 168763 Score = 38.2 bits (19), Expect = 7.1 Identities = 25/27 (92%) Strand = Plus / Plus Query: 95 tcctactgcattcctttctgctcaaat 121 ||||||| |||||||||||||| |||| Sbjct: 19633 tcctactacattcctttctgctgaaat 19659
>gb|AC002432.1| Homo sapiens BAC clone CTA-317G18 from 7, complete sequence Length = 143427 Score = 38.2 bits (19), Expect = 7.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 120 atcatattttaattctgtc 138 ||||||||||||||||||| Sbjct: 28598 atcatattttaattctgtc 28580
>ref|XM_661581.1| Cryptosporidium hominis TU502 hypothetical protein (Chro.70114) partial mRNA Length = 1434 Score = 38.2 bits (19), Expect = 7.1 Identities = 22/23 (95%) Strand = Plus / Plus Query: 41 agaaaatctgtcacaacttataa 63 ||||||| ||||||||||||||| Sbjct: 1300 agaaaatttgtcacaacttataa 1322
>emb|BX255923.13| Human DNA sequence from clone RP11-115J7 on chromosome 9 Contains the 5' end of a pseudogene similar to part of phosphoglucomutase 5 (PGRM) (PGM5), a novel gene, the gene for a novel forkhead box D4 (FOXD4) protein, the gene for a novel protein similar to COBW domain containing 1 (CBWD1) and four CpG islands, complete sequence Length = 179342 Score = 38.2 bits (19), Expect = 7.1 Identities = 25/27 (92%) Strand = Plus / Minus Query: 95 tcctactgcattcctttctgctcaaat 121 ||||||| |||||||||||||| |||| Sbjct: 99193 tcctactacattcctttctgctaaaat 99167
>gb|BT010315.1| Drosophila melanogaster AT27514 full insert cDNA Length = 5077 Score = 38.2 bits (19), Expect = 7.1 Identities = 25/27 (92%) Strand = Plus / Minus Query: 108 ctttctgctcaaatcatattttaattc 134 |||| ||||||||||| |||||||||| Sbjct: 1335 ctttgtgctcaaatcaaattttaattc 1309
>emb|AL357315.14| Human DNA sequence from clone RP11-809N15 on chromosome 6 Contains a putative novel gene and a novel gene. Contains a CpG island, complete sequence Length = 121129 Score = 38.2 bits (19), Expect = 7.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 120 atcatattttaattctgtc 138 ||||||||||||||||||| Sbjct: 107074 atcatattttaattctgtc 107092
>emb|AL355138.19| Human DNA sequence from clone RP11-203J14 on chromosome 10 Contains the gene for neuropeptide FF 1; RFamide-related peptide receptor (OT7T022), the 3' end of a novel gene (FLJ10751) and two CpG islands, complete sequence Length = 80236 Score = 38.2 bits (19), Expect = 7.1 Identities = 25/27 (92%) Strand = Plus / Plus Query: 95 tcctactgcattcctttctgctcaaat 121 ||||||| |||||||||||||| |||| Sbjct: 15661 tcctactacattcctttctgctgaaat 15687
>emb|AL353608.20| Human DNA sequence from clone RP11-561O23 on chromosome 9 Contains four novel genes, the CBWD3 gene for COBW domain containing 3, the FOXD4L3 gene for forkhead box D4 like 3, the 5' end of the PGM5 gene for phosphoglucomutase 5, and four CpG islands, complete sequence Length = 172991 Score = 38.2 bits (19), Expect = 7.1 Identities = 25/27 (92%) Strand = Plus / Minus Query: 95 tcctactgcattcctttctgctcaaat 121 ||||||| |||||||||||||| |||| Sbjct: 104906 tcctactacattcctttctgctaaaat 104880
>emb|AL133214.12| Human DNA sequence from clone RP11-163F8 on chromosome 9p21.2-23 Contains the 3' end of a novel gene (FLJ20276), the 5' end of the SH3GL2 gene for SH3-domain GRB2-like 2 (CNSA2, SH3P4, EEN-B1, SH3D2A), a poly(A)-binding protein pseudogene and a CpG Island, complete sequence Length = 154621 Score = 38.2 bits (19), Expect = 7.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 31 tactgtttggagaaaatct 49 ||||||||||||||||||| Sbjct: 116558 tactgtttggagaaaatct 116576
>gb|AC183111.3| Pan troglodytes BAC clone CH251-294L3 from chromosome 9, complete sequence Length = 150130 Score = 38.2 bits (19), Expect = 7.1 Identities = 25/27 (92%) Strand = Plus / Plus Query: 95 tcctactgcattcctttctgctcaaat 121 ||||||| |||||||||||||| |||| Sbjct: 131605 tcctactacattcctttctgctaaaat 131631
>emb|AL833050.1|HSM804361 Homo sapiens genomic DNA; cDNA DKFZp666G069 (from clone DKFZp666G069) Length = 2403 Score = 38.2 bits (19), Expect = 7.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 31 tactgtttggagaaaatct 49 ||||||||||||||||||| Sbjct: 1722 tactgtttggagaaaatct 1740
>gb|AC130888.2| Homo sapiens 3 BAC RP11-77P16 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 114687 Score = 38.2 bits (19), Expect = 7.1 Identities = 25/27 (92%) Strand = Plus / Minus Query: 95 tcctactgcattcctttctgctcaaat 121 ||||||| |||||||||||||| |||| Sbjct: 17108 tcctactacattcctttctgctgaaat 17082
>emb|AL445925.19| Human DNA sequence from clone RP11-403A15 on chromosome 9 Contains a pseudogene similar to part of FSHD region gene 1 (FSG1) (FRG1), a pseudogene similar to part of phosphoglucomutase 5 (PGRM) (PGM5) and four CpG islands, complete sequence Length = 196461 Score = 38.2 bits (19), Expect = 7.1 Identities = 25/27 (92%) Strand = Plus / Plus Query: 95 tcctactgcattcctttctgctcaaat 121 ||||||| |||||||||||||| |||| Sbjct: 178095 tcctactacattcctttctgctaaaat 178121
>gb|AC027588.11| Homo sapiens chromosome 18, clone RP11-257E18, complete sequence Length = 180480 Score = 38.2 bits (19), Expect = 7.1 Identities = 22/23 (95%) Strand = Plus / Minus Query: 34 tgtttggagaaaatctgtcacaa 56 |||||||||| |||||||||||| Sbjct: 17668 tgtttggagataatctgtcacaa 17646
>gb|AC182393.2| Pan troglodytes BAC clone CH251-503C15 from chromosome 9, complete sequence Length = 230693 Score = 38.2 bits (19), Expect = 7.1 Identities = 25/27 (92%) Strand = Plus / Minus Query: 95 tcctactgcattcctttctgctcaaat 121 ||||||| |||||||||||||| |||| Sbjct: 23813 tcctactacattcctttctgctaaaat 23787
>gb|AC091953.3| Homo sapiens chromosome 5 clone RP11-417J1, complete sequence Length = 172738 Score = 38.2 bits (19), Expect = 7.1 Identities = 22/23 (95%) Strand = Plus / Plus Query: 46 atctgtcacaacttataaataag 68 ||||||||||| ||||||||||| Sbjct: 117462 atctgtcacaatttataaataag 117484
>ref|NM_166057.1| Drosophila melanogaster Additional sex combs CG8787-RA, transcript variant A (Asx), mRNA Length = 6545 Score = 38.2 bits (19), Expect = 7.1 Identities = 25/27 (92%) Strand = Plus / Minus Query: 108 ctttctgctcaaatcatattttaattc 134 |||| ||||||||||| |||||||||| Sbjct: 1616 ctttgtgctcaaatcaaattttaattc 1590
>ref|NM_001014527.1| Drosophila melanogaster Additional sex combs CG8787-RB, transcript variant B (Asx), mRNA Length = 5066 Score = 38.2 bits (19), Expect = 7.1 Identities = 25/27 (92%) Strand = Plus / Minus Query: 108 ctttctgctcaaatcatattttaattc 134 |||| ||||||||||| |||||||||| Sbjct: 1338 ctttgtgctcaaatcaaattttaattc 1312
>emb|CR387925.5| Human DNA sequence from clone RP11-58A12 on chromosome 9, complete sequence Length = 172519 Score = 38.2 bits (19), Expect = 7.1 Identities = 25/27 (92%) Strand = Plus / Plus Query: 95 tcctactgcattcctttctgctcaaat 121 ||||||| |||||||||||||| |||| Sbjct: 148878 tcctactacattcctttctgctaaaat 148904
>ref|XM_628278.1| Cryptosporidium parvum Iowa II hypothetical protein (cgd7_920), partial mRNA Length = 3204 Score = 38.2 bits (19), Expect = 7.1 Identities = 22/23 (95%) Strand = Plus / Plus Query: 41 agaaaatctgtcacaacttataa 63 ||||||| ||||||||||||||| Sbjct: 3070 agaaaatttgtcacaacttataa 3092
>gb|AC154203.2| Mus musculus BAC clone RP24-387L1 from chromosome 13, complete sequence Length = 174845 Score = 38.2 bits (19), Expect = 7.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 41 agaaaatctgtcacaactt 59 ||||||||||||||||||| Sbjct: 59273 agaaaatctgtcacaactt 59255
>gb|AF359557.1|AF359557 Pseudomonas syringae pv. maculicola plasmid pFKN, complete sequence Length = 39554 Score = 38.2 bits (19), Expect = 7.1 Identities = 25/27 (92%) Strand = Plus / Plus Query: 21 acaatgagcgtactgtttggagaaaat 47 |||||| ||||| |||||||||||||| Sbjct: 34349 acaatgtgcgtagtgtttggagaaaat 34375
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 38.2 bits (19), Expect = 7.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 3 tggtttgctgcgtctgcca 21 ||||||||||||||||||| Sbjct: 15331193 tggtttgctgcgtctgcca 15331175
>gb|AF165423.6| Homo sapiens chromosome 3 clone CTB-402G2 map q, complete sequence Length = 125891 Score = 38.2 bits (19), Expect = 7.1 Identities = 25/27 (92%) Strand = Plus / Plus Query: 95 tcctactgcattcctttctgctcaaat 121 ||||||| |||||||||||||| |||| Sbjct: 15057 tcctactacattcctttctgctgaaat 15083
>gb|AC133065.3| Homo sapiens chromosome 16 clone RP11-876N24, complete sequence Length = 142215 Score = 38.2 bits (19), Expect = 7.1 Identities = 25/27 (92%) Strand = Plus / Minus Query: 95 tcctactgcattcctttctgctcaaat 121 ||||||||||||||||| |||| |||| Sbjct: 9595 tcctactgcattcctttttgctgaaat 9569
>gb|AC079807.5| Homo sapiens BAC clone RP11-760G15 from 2, complete sequence Length = 156175 Score = 38.2 bits (19), Expect = 7.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 51 tcacaacttataaataagc 69 ||||||||||||||||||| Sbjct: 51903 tcacaacttataaataagc 51921
>gb|AC145688.4| Pan troglodytes BAC clone CH251-346A10 from chromosome x, complete sequence Length = 174819 Score = 38.2 bits (19), Expect = 7.1 Identities = 25/27 (92%) Strand = Plus / Plus Query: 95 tcctactgcattcctttctgctcaaat 121 ||||||||||||||||| |||| |||| Sbjct: 47499 tcctactgcattcctttttgctgaaat 47525
>gb|AF277315.6| Homo sapiens chromosome X clone RP5-865E18, RP5-1087L19 map q28, complete sequence Length = 147234 Score = 38.2 bits (19), Expect = 7.1 Identities = 25/27 (92%) Strand = Plus / Plus Query: 95 tcctactgcattcctttctgctcaaat 121 ||||||||||||||||| |||| |||| Sbjct: 2708 tcctactgcattcctttttgctgaaat 2734
>gb|AC092969.7| Homo sapiens 3 BAC RP11-561L3 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 180773 Score = 38.2 bits (19), Expect = 7.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 110 ttctgctcaaatcatattt 128 ||||||||||||||||||| Sbjct: 119457 ttctgctcaaatcatattt 119475
>dbj|AP005420.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0418B08 Length = 165909 Score = 38.2 bits (19), Expect = 7.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 3 tggtttgctgcgtctgcca 21 ||||||||||||||||||| Sbjct: 110382 tggtttgctgcgtctgcca 110364
>dbj|AB122089.1| Oryza sativa (japonica cultivar-group) SAMDC1 gene for S-adenosylmethionine decarboxylase, complete cds Length = 2952 Score = 38.2 bits (19), Expect = 7.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 3 tggtttgctgcgtctgcca 21 ||||||||||||||||||| Sbjct: 2799 tggtttgctgcgtctgcca 2817
>dbj|AB011257.1| Rice yellow stunt virus genomic RNA, complete sequence, viral complementary strand Length = 14042 Score = 38.2 bits (19), Expect = 7.1 Identities = 22/23 (95%) Strand = Plus / Minus Query: 7 ttgctgcgtctgccacaatgagc 29 ||||||| ||||||||||||||| Sbjct: 8297 ttgctgcctctgccacaatgagc 8275
>gb|AC002087.1|HSAC002087 Human BAC clone GS1-113D4 from 5p15.2, complete sequence Length = 154028 Score = 38.2 bits (19), Expect = 7.1 Identities = 22/23 (95%) Strand = Plus / Plus Query: 46 atctgtcacaacttataaataag 68 ||||||||||| ||||||||||| Sbjct: 95214 atctgtcacaatttataaataag 95236
>gb|AC003983.1|AC003983 Human PAC clone RP1-93I3 from Xq23, complete sequence Length = 105563 Score = 38.2 bits (19), Expect = 7.1 Identities = 22/23 (95%) Strand = Plus / Plus Query: 33 ctgtttggagaaaatctgtcaca 55 ||||||||||||||| ||||||| Sbjct: 30916 ctgtttggagaaaatatgtcaca 30938
>dbj|AK102445.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033093N21, full insert sequence Length = 2047 Score = 38.2 bits (19), Expect = 7.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 3 tggtttgctgcgtctgcca 21 ||||||||||||||||||| Sbjct: 1899 tggtttgctgcgtctgcca 1917
>dbj|AK101535.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033048C18, full insert sequence Length = 2002 Score = 38.2 bits (19), Expect = 7.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 3 tggtttgctgcgtctgcca 21 ||||||||||||||||||| Sbjct: 1900 tggtttgctgcgtctgcca 1918
>dbj|AK100397.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023086M03, full insert sequence Length = 2546 Score = 38.2 bits (19), Expect = 7.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 3 tggtttgctgcgtctgcca 21 ||||||||||||||||||| Sbjct: 2425 tggtttgctgcgtctgcca 2443
>dbj|AK067682.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116D10, full insert sequence Length = 2034 Score = 38.2 bits (19), Expect = 7.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 3 tggtttgctgcgtctgcca 21 ||||||||||||||||||| Sbjct: 1899 tggtttgctgcgtctgcca 1917
>gb|L44140.1|HUMFLNG6PD Homo sapiens chromosome X region from filamin (FLN) gene to glucose-6-phosphate dehydrogenase (G6PD) gene, complete cds's Length = 219447 Score = 38.2 bits (19), Expect = 7.1 Identities = 25/27 (92%) Strand = Plus / Plus Query: 95 tcctactgcattcctttctgctcaaat 121 ||||||||||||||||| |||| |||| Sbjct: 192246 tcctactgcattcctttttgctgaaat 192272
>gb|AF009292.1|AF009292 Homo sapiens clone HED11 Cri-du-chat region mRNA Length = 212 Score = 38.2 bits (19), Expect = 7.1 Identities = 22/23 (95%) Strand = Plus / Minus Query: 46 atctgtcacaacttataaataag 68 ||||||||||| ||||||||||| Sbjct: 75 atctgtcacaatttataaataag 53
>emb|AJ001164.1|DMJ001164 Drosophila melanogaster additional sex combs cDNA sequence Length = 6550 Score = 38.2 bits (19), Expect = 7.1 Identities = 25/27 (92%) Strand = Plus / Minus Query: 108 ctttctgctcaaatcatattttaattc 134 |||| ||||||||||| |||||||||| Sbjct: 1613 ctttgtgctcaaatcaaattttaattc 1587
>emb|X55448.1|HSG6PDGEN H.sapiens G6PD gene for glucose-6-phosphate dehydrogenase Length = 52173 Score = 38.2 bits (19), Expect = 7.1 Identities = 25/27 (92%) Strand = Plus / Minus Query: 95 tcctactgcattcctttctgctcaaat 121 ||||||||||||||||| |||| |||| Sbjct: 27202 tcctactgcattcctttttgctgaaat 27176
>dbj|AB065729.1| Homo sapiens gene for seven transmembrane helix receptor, complete cds, isolate:CBRC7TM_292 Length = 12596 Score = 38.2 bits (19), Expect = 7.1 Identities = 25/27 (92%) Strand = Plus / Minus Query: 95 tcctactgcattcctttctgctcaaat 121 ||||||| |||||||||||||| |||| Sbjct: 9357 tcctactacattcctttctgctgaaat 9331 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,465,400 Number of Sequences: 3902068 Number of extensions: 1465400 Number of successful extensions: 120498 Number of sequences better than 10.0: 76 Number of HSP's better than 10.0 without gapping: 76 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 120289 Number of HSP's gapped (non-prelim): 209 length of query: 148 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 127 effective length of database: 17,151,101,840 effective search space: 2178189933680 effective search space used: 2178189933680 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)
