| Clone Name | baal15g13 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK111727.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023039E23, full insert sequence Length = 2106 Score = 408 bits (206), Expect = e-111 Identities = 365/418 (87%) Strand = Plus / Plus Query: 21 tctactacctccgcacgggcgcctgcggcttcggggaccgctgccgctacaaccatcccc 80 |||||||||||||||| ||||| ||||||||||| |||||||||||||||||||| || | Sbjct: 342 tctactacctccgcaccggcgcgtgcggcttcggtgaccgctgccgctacaaccacccgc 401 Query: 81 gcgatcgcggcggcactgagtttggtggaggcgcaaagaatgcagtagcattggactacc 140 ||||||||||||||||||||||||||||||| |||| |||||||| ||||||||| || | Sbjct: 402 gcgatcgcggcggcactgagtttggtggaggtgcaaggaatgcagcagcattggattatc 461 Query: 141 cggagcggttgggtcaaccagtatgtgagtattacatgaagactgggacttgcaaatttg 200 | || || ||||||||| |||| |||||||||||||||||||||||||||||||||| Sbjct: 462 cagaaagggcgggtcaacctatatgcgagtattacatgaagactgggacttgcaaatttg 521 Query: 201 gttccaattgcaaatatcaccatcctaagcaagatggttctgtgcagcctgtgatgttaa 260 || |||||||||||||||||||||||||||||||||| |||||| ||||| ||||||| Sbjct: 522 gtaccaattgcaaatatcaccatcctaagcaagatggagctgtgctacctgttatgttaa 581 Query: 261 acagtaatggattccctctacgcccgggtgagaaagagtgctcctactacatgaagactg 320 ||| | |||||||||| |||||| ||||||||| |||||||||||||||||||| |||| Sbjct: 582 acaacagtggattccctatacgcctgggtgagaaggagtgctcctactacatgaaaactg 641 Query: 321 gacaatgcaagtttggttcgacatgtaaatttcatcatccagaatttggtggtgttccag 380 | ||||| || ||||| | ||||||||||| |||||||| ||||| ||||||||||| Sbjct: 642 ggcaatgtaaatttggaactacatgtaaattccatcatccggaattcggtggtgttccga 701 Query: 381 ttactcctggaatttatccaccattgcagtcgtcaactgtatcttcgcctcatccata 438 | || |||||||| || |||||||| ||||| || || || |||| ||||||||||| Sbjct: 702 tgacccctggaatatacccaccattacagtctccatctatagcttcccctcatccata 759
>dbj|AK111633.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116H24, full insert sequence Length = 2259 Score = 408 bits (206), Expect = e-111 Identities = 365/418 (87%) Strand = Plus / Plus Query: 21 tctactacctccgcacgggcgcctgcggcttcggggaccgctgccgctacaaccatcccc 80 |||||||||||||||| ||||| ||||||||||| |||||||||||||||||||| || | Sbjct: 493 tctactacctccgcaccggcgcgtgcggcttcggtgaccgctgccgctacaaccacccgc 552 Query: 81 gcgatcgcggcggcactgagtttggtggaggcgcaaagaatgcagtagcattggactacc 140 ||||||||||||||||||||||||||||||| |||| |||||||| ||||||||| || | Sbjct: 553 gcgatcgcggcggcactgagtttggtggaggtgcaaggaatgcagcagcattggattatc 612 Query: 141 cggagcggttgggtcaaccagtatgtgagtattacatgaagactgggacttgcaaatttg 200 | || || ||||||||| |||| |||||||||||||||||||||||||||||||||| Sbjct: 613 cagaaagggcgggtcaacctatatgcgagtattacatgaagactgggacttgcaaatttg 672 Query: 201 gttccaattgcaaatatcaccatcctaagcaagatggttctgtgcagcctgtgatgttaa 260 || |||||||||||||||||||||||||||||||||| |||||| ||||| ||||||| Sbjct: 673 gtaccaattgcaaatatcaccatcctaagcaagatggagctgtgctacctgttatgttaa 732 Query: 261 acagtaatggattccctctacgcccgggtgagaaagagtgctcctactacatgaagactg 320 ||| | |||||||||| |||||| ||||||||| |||||||||||||||||||| |||| Sbjct: 733 acaacagtggattccctatacgcctgggtgagaaggagtgctcctactacatgaaaactg 792 Query: 321 gacaatgcaagtttggttcgacatgtaaatttcatcatccagaatttggtggtgttccag 380 | ||||| || ||||| | ||||||||||| |||||||| ||||| ||||||||||| Sbjct: 793 ggcaatgtaaatttggaactacatgtaaattccatcatccggaattcggtggtgttccga 852 Query: 381 ttactcctggaatttatccaccattgcagtcgtcaactgtatcttcgcctcatccata 438 | || |||||||| || |||||||| ||||| || || || |||| ||||||||||| Sbjct: 853 tgacccctggaatatacccaccattacagtctccatctatagcttcccctcatccata 910
>dbj|AK111903.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023093O12, full insert sequence Length = 2180 Score = 400 bits (202), Expect = e-108 Identities = 364/418 (87%) Strand = Plus / Plus Query: 21 tctactacctccgcacgggcgcctgcggcttcggggaccgctgccgctacaaccatcccc 80 |||||||||||||||| ||||| ||||||||||| |||||||||||||||||||| || | Sbjct: 361 tctactacctccgcaccggcgcgtgcggcttcggtgaccgctgccgctacaaccacccgc 420 Query: 81 gcgatcgcggcggcactgagtttggtggaggcgcaaagaatgcagtagcattggactacc 140 ||||||||||||||||||||||||||||||| |||| |||||||| ||||||||| || | Sbjct: 421 gcgatcgcggcggcactgagtttggtggaggtgcaaggaatgcagcagcattggattatc 480 Query: 141 cggagcggttgggtcaaccagtatgtgagtattacatgaagactgggacttgcaaatttg 200 | || || ||||||||| |||| |||||||||||||||||||||||||||||||||| Sbjct: 481 cagaaagggcgggtcaacctatatgcgagtattacatgaagactgggacttgcaaatttg 540 Query: 201 gttccaattgcaaatatcaccatcctaagcaagatggttctgtgcagcctgtgatgttaa 260 || |||||||||||||||||||||||||||||||||| |||||| ||||| ||||||| Sbjct: 541 gtaccaattgcaaatatcaccatcctaagcaagatggagctgtgctacctgttatgttaa 600 Query: 261 acagtaatggattccctctacgcccgggtgagaaagagtgctcctactacatgaagactg 320 ||| | |||||||||| |||||| ||||||||| ||||||||||||||||||| |||| Sbjct: 601 acaacagtggattccctatacgcctgggtgagaagaagtgctcctactacatgaaaactg 660 Query: 321 gacaatgcaagtttggttcgacatgtaaatttcatcatccagaatttggtggtgttccag 380 | ||||| || ||||| | ||||||||||| |||||||| ||||| ||||||||||| Sbjct: 661 ggcaatgtaaatttggaactacatgtaaattccatcatccggaattcggtggtgttccga 720 Query: 381 ttactcctggaatttatccaccattgcagtcgtcaactgtatcttcgcctcatccata 438 | || |||||||| || |||||||| ||||| || || || |||| ||||||||||| Sbjct: 721 tgacccctggaatatacccaccattacagtctccatctatagcttcccctcatccata 778
>ref|NM_187934.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1083 Score = 157 bits (79), Expect = 4e-35 Identities = 109/119 (91%) Strand = Plus / Plus Query: 166 tgagtattacatgaagactgggacttgcaaatttggttccaattgcaaatatcaccatcc 225 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 273 tgagtattacatgaagactgggacttgcaaatttggtaccaattgcaaatatcaccatcc 332 Query: 226 taagcaagatggttctgtgcagcctgtgatgttaaacagtaatggattccctctacgcc 284 |||||||||||| |||||| ||||| |||||||||| | |||||||||| |||||| Sbjct: 333 taagcaagatggagctgtgctacctgttatgttaaacaacagtggattccctatacgcc 391 Score = 121 bits (61), Expect = 2e-24 Identities = 76/81 (93%) Strand = Plus / Plus Query: 21 tctactacctccgcacgggcgcctgcggcttcggggaccgctgccgctacaaccatcccc 80 |||||||||||||||| ||||| ||||||||||| |||||||||||||||||||| || | Sbjct: 197 tctactacctccgcaccggcgcgtgcggcttcggtgaccgctgccgctacaaccacccgc 256 Query: 81 gcgatcgcggcggcactgagt 101 ||||||||||||||||||||| Sbjct: 257 gcgatcgcggcggcactgagt 277
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 153 bits (77), Expect = 6e-34 Identities = 107/117 (91%) Strand = Plus / Minus Query: 168 agtattacatgaagactgggacttgcaaatttggttccaattgcaaatatcaccatccta 227 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 8661899 agtattacatgaagactgggacttgcaaatttggtaccaattgcaaatatcaccatccta 8661840 Query: 228 agcaagatggttctgtgcagcctgtgatgttaaacagtaatggattccctctacgcc 284 |||||||||| |||||| ||||| |||||||||| | |||||||||| |||||| Sbjct: 8661839 agcaagatggagctgtgctacctgttatgttaaacaacagtggattccctatacgcc 8661783 Score = 119 bits (60), Expect = 8e-24 Identities = 75/80 (93%) Strand = Plus / Minus Query: 21 tctactacctccgcacgggcgcctgcggcttcggggaccgctgccgctacaaccatcccc 80 |||||||||||||||| ||||| ||||||||||| |||||||||||||||||||| || | Sbjct: 8663283 tctactacctccgcaccggcgcgtgcggcttcggtgaccgctgccgctacaaccacccgc 8663224 Query: 81 gcgatcgcggcggcactgag 100 |||||||||||||||||||| Sbjct: 8663223 gcgatcgcggcggcactgag 8663204 Score = 113 bits (57), Expect = 5e-22 Identities = 129/153 (84%) Strand = Plus / Minus Query: 286 gggtgagaaagagtgctcctactacatgaagactggacaatgcaagtttggttcgacatg 345 ||||||||| |||||||||||||||||||| ||||| ||||| || ||||| | ||||| Sbjct: 8661695 gggtgagaaggagtgctcctactacatgaaaactgggcaatgtaaatttggaactacatg 8661636 Query: 346 taaatttcatcatccagaatttggtggtgttccagttactcctggaatttatccaccatt 405 |||||| |||||||| ||||| ||||||||||| | || |||||||| || |||||||| Sbjct: 8661635 taaattccatcatccggaattcggtggtgttccgatgacccctggaatatacccaccatt 8661576 Query: 406 gcagtcgtcaactgtatcttcgcctcatccata 438 ||||| || || || |||| ||||||||||| Sbjct: 8661575 acagtctccatctatagcttcccctcatccata 8661543 Score = 87.7 bits (44), Expect = 3e-14 Identities = 71/80 (88%) Strand = Plus / Minus Query: 10 ggcggactgcatctactacctccgcacgggcgcctgcggcttcggggaccgctgccgcta 69 |||||||||| ||||||||||||||||||| || ||||||| |||||| ||||||||| Sbjct: 8597843 ggcggactgcgtctactacctccgcacgggggcttgcggctacggggagaactgccgcta 8597784 Query: 70 caaccatccccgcgatcgcg 89 |||||| || |||||||||| Sbjct: 8597783 caaccacccgcgcgatcgcg 8597764 Score = 54.0 bits (27), Expect = 4e-04 Identities = 72/87 (82%) Strand = Plus / Minus Query: 286 gggtgagaaagagtgctcctactacatgaagactggacaatgcaagtttggttcgacatg 345 |||||||||||| || ||||||| | || ||||| || ||||| ||||| || ||||| Sbjct: 8596785 gggtgagaaagattgtacctactatgtcaaaactggccattgcaaatttggatctacatg 8596726 Query: 346 taaatttcatcatccagaatttggtgg 372 |||||| ||||| |||||| ||||||| Sbjct: 8596725 taaattccatcacccagaaattggtgg 8596699 Score = 50.1 bits (25), Expect = 0.006 Identities = 34/37 (91%) Strand = Plus / Minus Query: 99 agtttggtggaggcgcaaagaatgcagtagcattgga 135 ||||||||||||| |||| |||||||| ||||||||| Sbjct: 8662212 agtttggtggaggtgcaaggaatgcagcagcattgga 8662176 Score = 42.1 bits (21), Expect = 1.5 Identities = 42/49 (85%) Strand = Plus / Minus Query: 312 tgaagactggacaatgcaagtttggttcgacatgtaaatttcatcatcc 360 ||||||||||| |||||||||||| | ||||| ||||| |||||||| Sbjct: 40002224 tgaagactggaacatgcaagtttgggcctacatgcaaattccatcatcc 40002176 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 341 acatgtaaatttcatcatccagaa 364 |||||||||||||| ||||||||| Sbjct: 40001963 acatgtaaatttcaccatccagaa 40001940
>dbj|AP002525.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0462H08 Length = 139152 Score = 153 bits (77), Expect = 6e-34 Identities = 107/117 (91%) Strand = Plus / Minus Query: 168 agtattacatgaagactgggacttgcaaatttggttccaattgcaaatatcaccatccta 227 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 94094 agtattacatgaagactgggacttgcaaatttggtaccaattgcaaatatcaccatccta 94035 Query: 228 agcaagatggttctgtgcagcctgtgatgttaaacagtaatggattccctctacgcc 284 |||||||||| |||||| ||||| |||||||||| | |||||||||| |||||| Sbjct: 94034 agcaagatggagctgtgctacctgttatgttaaacaacagtggattccctatacgcc 93978 Score = 119 bits (60), Expect = 8e-24 Identities = 75/80 (93%) Strand = Plus / Minus Query: 21 tctactacctccgcacgggcgcctgcggcttcggggaccgctgccgctacaaccatcccc 80 |||||||||||||||| ||||| ||||||||||| |||||||||||||||||||| || | Sbjct: 95478 tctactacctccgcaccggcgcgtgcggcttcggtgaccgctgccgctacaaccacccgc 95419 Query: 81 gcgatcgcggcggcactgag 100 |||||||||||||||||||| Sbjct: 95418 gcgatcgcggcggcactgag 95399 Score = 113 bits (57), Expect = 5e-22 Identities = 129/153 (84%) Strand = Plus / Minus Query: 286 gggtgagaaagagtgctcctactacatgaagactggacaatgcaagtttggttcgacatg 345 ||||||||| |||||||||||||||||||| ||||| ||||| || ||||| | ||||| Sbjct: 93890 gggtgagaaggagtgctcctactacatgaaaactgggcaatgtaaatttggaactacatg 93831 Query: 346 taaatttcatcatccagaatttggtggtgttccagttactcctggaatttatccaccatt 405 |||||| |||||||| ||||| ||||||||||| | || |||||||| || |||||||| Sbjct: 93830 taaattccatcatccggaattcggtggtgttccgatgacccctggaatatacccaccatt 93771 Query: 406 gcagtcgtcaactgtatcttcgcctcatccata 438 ||||| || || || |||| ||||||||||| Sbjct: 93770 acagtctccatctatagcttcccctcatccata 93738 Score = 87.7 bits (44), Expect = 3e-14 Identities = 71/80 (88%) Strand = Plus / Minus Query: 10 ggcggactgcatctactacctccgcacgggcgcctgcggcttcggggaccgctgccgcta 69 |||||||||| ||||||||||||||||||| || ||||||| |||||| ||||||||| Sbjct: 30038 ggcggactgcgtctactacctccgcacgggggcttgcggctacggggagaactgccgcta 29979 Query: 70 caaccatccccgcgatcgcg 89 |||||| || |||||||||| Sbjct: 29978 caaccacccgcgcgatcgcg 29959 Score = 54.0 bits (27), Expect = 4e-04 Identities = 72/87 (82%) Strand = Plus / Minus Query: 286 gggtgagaaagagtgctcctactacatgaagactggacaatgcaagtttggttcgacatg 345 |||||||||||| || ||||||| | || ||||| || ||||| ||||| || ||||| Sbjct: 28980 gggtgagaaagattgtacctactatgtcaaaactggccattgcaaatttggatctacatg 28921 Query: 346 taaatttcatcatccagaatttggtgg 372 |||||| ||||| |||||| ||||||| Sbjct: 28920 taaattccatcacccagaaattggtgg 28894 Score = 50.1 bits (25), Expect = 0.006 Identities = 34/37 (91%) Strand = Plus / Minus Query: 99 agtttggtggaggcgcaaagaatgcagtagcattgga 135 ||||||||||||| |||| |||||||| ||||||||| Sbjct: 94407 agtttggtggaggtgcaaggaatgcagcagcattgga 94371
>ref|NM_187921.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1356 Score = 87.7 bits (44), Expect = 3e-14 Identities = 71/80 (88%) Strand = Plus / Plus Query: 10 ggcggactgcatctactacctccgcacgggcgcctgcggcttcggggaccgctgccgcta 69 |||||||||| ||||||||||||||||||| || ||||||| |||||| ||||||||| Sbjct: 84 ggcggactgcgtctactacctccgcacgggggcttgcggctacggggagaactgccgcta 143 Query: 70 caaccatccccgcgatcgcg 89 |||||| || |||||||||| Sbjct: 144 caaccacccgcgcgatcgcg 163 Score = 65.9 bits (33), Expect = 1e-07 Identities = 87/105 (82%) Strand = Plus / Plus Query: 268 tggattccctctacgcccgggtgagaaagagtgctcctactacatgaagactggacaatg 327 ||||| |||||||||| | ||||||||||| || ||||||| | || ||||| || || Sbjct: 342 tggataccctctacgctcaggtgagaaagattgtacctactatgtcaaaactggccattg 401 Query: 328 caagtttggttcgacatgtaaatttcatcatccagaatttggtgg 372 ||| ||||| || ||||||||||| ||||| |||||| ||||||| Sbjct: 402 caaatttggatctacatgtaaattccatcacccagaaattggtgg 446
>dbj|AK073920.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033073E09, full insert sequence Length = 2320 Score = 87.7 bits (44), Expect = 3e-14 Identities = 71/80 (88%) Strand = Plus / Plus Query: 10 ggcggactgcatctactacctccgcacgggcgcctgcggcttcggggaccgctgccgcta 69 |||||||||| ||||||||||||||||||| || ||||||| |||||| ||||||||| Sbjct: 459 ggcggactgcgtctactacctccgcacgggggcttgcggctacggggagaactgccgcta 518 Query: 70 caaccatccccgcgatcgcg 89 |||||| || |||||||||| Sbjct: 519 caaccacccgcgcgatcgcg 538 Score = 65.9 bits (33), Expect = 1e-07 Identities = 87/105 (82%) Strand = Plus / Plus Query: 268 tggattccctctacgcccgggtgagaaagagtgctcctactacatgaagactggacaatg 327 ||||| |||||||||| | ||||||||||| || ||||||| | || ||||| || || Sbjct: 717 tggataccctctacgctcaggtgagaaagattgtacctactatgtcaaaactggccattg 776 Query: 328 caagtttggttcgacatgtaaatttcatcatccagaatttggtgg 372 ||| ||||| || ||||||||||| ||||| |||||| ||||||| Sbjct: 777 caaatttggatctacatgtaaattccatcacccagaaattggtgg 821
>gb|AC146552.16| Medicago truncatula clone mth2-9d1, complete sequence Length = 113088 Score = 79.8 bits (40), Expect = 7e-12 Identities = 67/76 (88%) Strand = Plus / Minus Query: 286 gggtgagaaagagtgctcctactacatgaagactggacaatgcaagtttggttcgacatg 345 ||||||||||||||| ||||| || |||| || |||||||||||||||||| | ||||| Sbjct: 372 gggtgagaaagagtgttcctattatgtgaaaacgggacaatgcaagtttggtgcaacatg 313 Query: 346 taaatttcatcatcca 361 |||||| ||||||||| Sbjct: 312 taaattccatcatcca 297
>gb|BT014160.1| Lycopersicon esculentum clone 133280F, mRNA sequence Length = 1675 Score = 50.1 bits (25), Expect = 0.006 Identities = 37/41 (90%) Strand = Plus / Plus Query: 188 acttgcaaatttggttccaattgcaaatatcaccatcctaa 228 |||||||||||||| ||| |||||||| |||||||||||| Sbjct: 550 acttgcaaatttggagccacttgcaaatttcaccatcctaa 590
>ref|NM_130352.2| Arabidopsis thaliana nucleic acid binding AT2G47850 mRNA, complete cds Length = 2149 Score = 46.1 bits (23), Expect = 0.097 Identities = 62/75 (82%) Strand = Plus / Plus Query: 286 gggtgagaaagagtgctcctactacatgaagactggacaatgcaagtttggttcgacatg 345 |||||| || || ||||||||||| |||| || || |||||||| |||||| || || Sbjct: 691 gggtgataacgaatgctcctactatttgaaaacggggcaatgcaaatttggtataacctg 750 Query: 346 taaatttcatcatcc 360 ||||||||||||||| Sbjct: 751 taaatttcatcatcc 765
>ref|NM_112103.2| Arabidopsis thaliana HUA1 (ENHANCER OF AG-4 1) AT3G12680 (HUA1) mRNA, complete cds Length = 1913 Score = 46.1 bits (23), Expect = 0.097 Identities = 47/55 (85%) Strand = Plus / Plus Query: 307 ctacatgaagactggacaatgcaagtttggttcgacatgtaaatttcatcatcca 361 |||||||||||||||| |||| || ||||||| | |||| ||||| || |||||| Sbjct: 969 ctacatgaagactggaaaatgtaaatttggtttgtcatgcaaattccaccatcca 1023 Score = 40.1 bits (20), Expect = 6.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 170 tattacatgaagactgggacttgcaaat 197 |||||||||||||| || |||||||||| Sbjct: 1582 tattacatgaagacaggaacttgcaaat 1609
>gb|AC006072.4| Arabidopsis thaliana chromosome 2 clone T9J23 map CIC06C03, complete sequence Length = 81565 Score = 46.1 bits (23), Expect = 0.097 Identities = 62/75 (82%) Strand = Plus / Plus Query: 286 gggtgagaaagagtgctcctactacatgaagactggacaatgcaagtttggttcgacatg 345 |||||| || || ||||||||||| |||| || || |||||||| |||||| || || Sbjct: 73 gggtgataacgaatgctcctactatttgaaaacggggcaatgcaaatttggtataacctg 132 Query: 346 taaatttcatcatcc 360 ||||||||||||||| Sbjct: 133 taaatttcatcatcc 147
>gb|AC005309.3| Arabidopsis thaliana chromosome 2 clone F17A22 map CIC06C03, complete sequence Length = 106355 Score = 46.1 bits (23), Expect = 0.097 Identities = 62/75 (82%) Strand = Plus / Plus Query: 286 gggtgagaaagagtgctcctactacatgaagactggacaatgcaagtttggttcgacatg 345 |||||| || || ||||||||||| |||| || || |||||||| |||||| || || Sbjct: 64382 gggtgataacgaatgctcctactatttgaaaacggggcaatgcaaatttggtataacctg 64441 Query: 346 taaatttcatcatcc 360 ||||||||||||||| Sbjct: 64442 taaatttcatcatcc 64456
>gb|AY024357.1| Arabidopsis thaliana floral homeotic protein HUA1 (HUA1) mRNA, complete cds Length = 1913 Score = 46.1 bits (23), Expect = 0.097 Identities = 47/55 (85%) Strand = Plus / Plus Query: 307 ctacatgaagactggacaatgcaagtttggttcgacatgtaaatttcatcatcca 361 |||||||||||||||| |||| || ||||||| | |||| ||||| || |||||| Sbjct: 969 ctacatgaagactggaaaatgtaaatttggtttgtcatgcaaattccaccatcca 1023 Score = 40.1 bits (20), Expect = 6.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 170 tattacatgaagactgggacttgcaaat 197 |||||||||||||| || |||||||||| Sbjct: 1582 tattacatgaagacaggaacttgcaaat 1609
>gb|AC069474.4|AC069474 Arabidopsis thaliana chromosome 3 BAC T2E22 genomic sequence, complete sequence Length = 105768 Score = 46.1 bits (23), Expect = 0.097 Identities = 47/55 (85%) Strand = Plus / Plus Query: 307 ctacatgaagactggacaatgcaagtttggttcgacatgtaaatttcatcatcca 361 |||||||||||||||| |||| || ||||||| | |||| ||||| || |||||| Sbjct: 1130 ctacatgaagactggaaaatgtaaatttggtttgtcatgcaaattccaccatcca 1184 Score = 40.1 bits (20), Expect = 6.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 170 tattacatgaagactgggacttgcaaat 197 |||||||||||||| || |||||||||| Sbjct: 2384 tattacatgaagacaggaacttgcaaat 2411
>dbj|AB024033.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MBK21 Length = 79125 Score = 46.1 bits (23), Expect = 0.097 Identities = 47/55 (85%) Strand = Plus / Minus Query: 307 ctacatgaagactggacaatgcaagtttggttcgacatgtaaatttcatcatcca 361 |||||||||||||||| |||| || ||||||| | |||| ||||| || |||||| Sbjct: 11576 ctacatgaagactggaaaatgtaaatttggtttgtcatgcaaattccaccatcca 11522 Score = 40.1 bits (20), Expect = 6.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 170 tattacatgaagactgggacttgcaaat 197 |||||||||||||| || |||||||||| Sbjct: 10322 tattacatgaagacaggaacttgcaaat 10295
>emb|CR936947.2| Medicago truncatula chromosome 5 clone mte1-85h10, COMPLETE SEQUENCE Length = 136310 Score = 44.1 bits (22), Expect = 0.39 Identities = 34/38 (89%) Strand = Plus / Plus Query: 325 atgcaagtttggttcgacatgtaaatttcatcatccag 362 ||||||||||||| | ||||| |||||| ||||||||| Sbjct: 2388 atgcaagtttggtccaacatgcaaatttgatcatccag 2425 Score = 42.1 bits (21), Expect = 1.5 Identities = 30/33 (90%) Strand = Plus / Plus Query: 329 aagtttggttcgacatgtaaatttcatcatcca 361 |||| ||| ||||||||||||| |||||||||| Sbjct: 943 aagtatggatcgacatgtaaatatcatcatcca 975
>emb|CR931731.1| Medicago truncatula chromosome 5 clone mth2-83l19, COMPLETE SEQUENCE Length = 120299 Score = 44.1 bits (22), Expect = 0.39 Identities = 34/38 (89%) Strand = Plus / Minus Query: 325 atgcaagtttggttcgacatgtaaatttcatcatccag 362 ||||||||||||| | ||||| |||||| ||||||||| Sbjct: 19348 atgcaagtttggtccaacatgcaaatttgatcatccag 19311 Score = 42.1 bits (21), Expect = 1.5 Identities = 30/33 (90%) Strand = Plus / Minus Query: 329 aagtttggttcgacatgtaaatttcatcatcca 361 |||| ||| ||||||||||||| |||||||||| Sbjct: 20793 aagtatggatcgacatgtaaatatcatcatcca 20761
>gb|AC133958.4| Mus musculus BAC clone RP23-367E13 from 14, complete sequence Length = 170336 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 162 tatgtgagtattacatgaagac 183 |||||||||||||||||||||| Sbjct: 121514 tatgtgagtattacatgaagac 121493
>ref|NM_114703.1| Arabidopsis thaliana nucleic acid binding AT3G48440 mRNA, complete cds Length = 1347 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 205 caattgcaaatatcaccatcctaag 229 |||||||||||| |||||||||||| Sbjct: 1095 caattgcaaataccaccatcctaag 1119
>ref|NM_111516.3| Arabidopsis thaliana nucleic acid binding AT3G06410 mRNA, complete cds Length = 1797 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 279 tacgcccgggtgagaaagagtgctc 303 |||||||||| |||||||||||||| Sbjct: 681 tacgcccgggagagaaagagtgctc 705
>ref|NM_189952.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1263 Score = 42.1 bits (21), Expect = 1.5 Identities = 42/49 (85%) Strand = Plus / Plus Query: 312 tgaagactggacaatgcaagtttggttcgacatgtaaatttcatcatcc 360 ||||||||||| |||||||||||| | ||||| ||||| |||||||| Sbjct: 272 tgaagactggaacatgcaagtttgggcctacatgcaaattccatcatcc 320 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 341 acatgtaaatttcatcatccagaa 364 |||||||||||||| ||||||||| Sbjct: 439 acatgtaaatttcaccatccagaa 462
>gb|AC132610.3| Mus musculus BAC clone RP23-374N15 from chromosome 6, complete sequence Length = 195587 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 325 atgcaagtttggttcgacatgtaaa 349 ||||||||||||||||| ||||||| Sbjct: 75551 atgcaagtttggttcgatatgtaaa 75575
>emb|AL133380.5| Human DNA sequence from clone RP5-862P8 on chromosome 1q42.2-43 Contains a ribosomal protein S7 (RPS7) pseudogene, pecanex homolog (Drosophila) (PCNX) pseudogene and the gene for mixed lineage kinase 4 (KIAA1804), complete sequence Length = 118632 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 40 cgcctgcggcttcggggaccgctgc 64 |||| |||||||||||||||||||| Sbjct: 40784 cgcccgcggcttcggggaccgctgc 40808
>emb|AL049659.2|ATT29H11 Arabidopsis thaliana DNA chromosome 3, BAC clone T29H11 Length = 97488 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 205 caattgcaaatatcaccatcctaag 229 |||||||||||| |||||||||||| Sbjct: 75754 caattgcaaataccaccatcctaag 75778
>emb|AJ311798.1|HSA311798 Homo sapiens mRNA for mixed lineage kinase 4beta (MLK4BETA gene) Length = 4667 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 40 cgcctgcggcttcggggaccgctgc 64 |||| |||||||||||||||||||| Sbjct: 31 cgcccgcggcttcggggaccgctgc 55
>emb|AJ311797.1|HSA311797 Homo sapiens mRNA for mixed lineage kinase 4alpha (MLK4ALPHA gene) Length = 3910 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 40 cgcctgcggcttcggggaccgctgc 64 |||| |||||||||||||||||||| Sbjct: 31 cgcccgcggcttcggggaccgctgc 55
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 102 ttggtggaggcgcaaagaatg 122 ||||||||||||||||||||| Sbjct: 8835403 ttggtggaggcgcaaagaatg 8835383
>emb|BX824886.1|CNS0A5RR Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH7ZG12 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1090 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 205 caattgcaaatatcaccatcctaag 229 |||||||||||| |||||||||||| Sbjct: 712 caattgcaaataccaccatcctaag 736
>ref|NM_032435.1| Homo sapiens mixed lineage kinase 4 (KIAA1804), mRNA Length = 4667 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 40 cgcctgcggcttcggggaccgctgc 64 |||| |||||||||||||||||||| Sbjct: 31 cgcccgcggcttcggggaccgctgc 55
>dbj|AP003451.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0413C03 Length = 162161 Score = 42.1 bits (21), Expect = 1.5 Identities = 42/49 (85%) Strand = Plus / Minus Query: 312 tgaagactggacaatgcaagtttggttcgacatgtaaatttcatcatcc 360 ||||||||||| |||||||||||| | ||||| ||||| |||||||| Sbjct: 93675 tgaagactggaacatgcaagtttgggcctacatgcaaattccatcatcc 93627 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 341 acatgtaaatttcatcatccagaa 364 |||||||||||||| ||||||||| Sbjct: 93414 acatgtaaatttcaccatccagaa 93391
>dbj|AP005382.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OJ1001_B06 Length = 134810 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 102 ttggtggaggcgcaaagaatg 122 ||||||||||||||||||||| Sbjct: 105724 ttggtggaggcgcaaagaatg 105704
>dbj|AP003575.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0528B02 Length = 144495 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 102 ttggtggaggcgcaaagaatg 122 ||||||||||||||||||||| Sbjct: 1032 ttggtggaggcgcaaagaatg 1012
>dbj|AK112102.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-110-B05, full insert sequence Length = 1733 Score = 42.1 bits (21), Expect = 1.5 Identities = 42/49 (85%) Strand = Plus / Plus Query: 312 tgaagactggacaatgcaagtttggttcgacatgtaaatttcatcatcc 360 ||||||||||| |||||||||||| | ||||| ||||| |||||||| Sbjct: 156 tgaagactggaacatgcaagtttgggcctacatgcaaattccatcatcc 204 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 341 acatgtaaatttcatcatccagaa 364 |||||||||||||| ||||||||| Sbjct: 323 acatgtaaatttcaccatccagaa 346
>emb|AJ324314.1|HSA324314 Homo sapiens genomic sequence surrounding NotI site, clone NR5-DM9C Length = 763 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 40 cgcctgcggcttcggggaccgctgc 64 |||| |||||||||||||||||||| Sbjct: 179 cgcccgcggcttcggggaccgctgc 155
>dbj|AK098948.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013050D10, full insert sequence Length = 1656 Score = 42.1 bits (21), Expect = 1.5 Identities = 42/49 (85%) Strand = Plus / Plus Query: 312 tgaagactggacaatgcaagtttggttcgacatgtaaatttcatcatcc 360 ||||||||||| |||||||||||| | ||||| ||||| |||||||| Sbjct: 555 tgaagactggaacatgcaagtttgggcctacatgcaaattccatcatcc 603 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 341 acatgtaaatttcatcatccagaa 364 |||||||||||||| ||||||||| Sbjct: 722 acatgtaaatttcaccatccagaa 745
>gb|BT023972.1| Zea mays clone EL01N0401B01 mRNA sequence Length = 1490 Score = 42.1 bits (21), Expect = 1.5 Identities = 42/49 (85%) Strand = Plus / Plus Query: 312 tgaagactggacaatgcaagtttggttcgacatgtaaatttcatcatcc 360 ||||||||||| |||||||||||| | ||||| |||||||| ||||| Sbjct: 504 tgaagactggaacatgcaagtttggccctacatgcaaatttcaccatcc 552
>emb|BX088549.9| Zebrafish DNA sequence from clone CH211-208G1 in linkage group 18, complete sequence Length = 195282 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 340 gacatgtaaatttcatcatccagaatttg 368 ||||||||||||||||||| | ||||||| Sbjct: 42151 gacatgtaaatttcatcatgctgaatttg 42179
>emb|AL121768.4|CNS01DSB Human chromosome 14 DNA sequence BAC R-976B16 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 213239 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 324 aatgcaagtttggttcgacat 344 ||||||||||||||||||||| Sbjct: 86374 aatgcaagtttggttcgacat 86394
>ref|XM_644067.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (337.t00009) partial mRNA Length = 603 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 348 aatttcatcatccagaattt 367 |||||||||||||||||||| Sbjct: 405 aatttcatcatccagaattt 386
>emb|AL451138.5| Human DNA sequence from clone RP11-152H3 on chromosome 9, complete sequence Length = 117273 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 325 atgcaagtttggttcgacat 344 |||||||||||||||||||| Sbjct: 14925 atgcaagtttggttcgacat 14944
>ref|XM_793565.1| PREDICTED: Strongylocentrotus purpuratus similar to hydroxyacid oxidase 1 (LOC594116), partial mRNA Length = 858 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 cggactgcatctactacctc 31 |||||||||||||||||||| Sbjct: 731 cggactgcatctactacctc 712
>emb|AL121902.13|HSBA80K6 Human DNA sequence from clone RP11-80K6 on chromosome 20 Contains a novel gene, the RPL36P1 gene for ribosomal protein L36 pseudogene 1, the 5' end of the gene for a novel protein (FLJ33887) and a CpG island, complete sequence Length = 170740 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 197 tttggttccaattgcaaatatcac 220 ||||||||||||| |||||||||| Sbjct: 162403 tttggttccaatttcaaatatcac 162426
>ref|XM_789768.1| PREDICTED: Strongylocentrotus purpuratus similar to hydroxyacid oxidase 1 (LOC590153), mRNA Length = 1241 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 cggactgcatctactacctc 31 |||||||||||||||||||| Sbjct: 958 cggactgcatctactacctc 939
>gb|AF312913.1|AF312913 Homo sapiens chromosome 20 clone h119, complete sequence Length = 122951 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 197 tttggttccaattgcaaatatcac 220 ||||||||||||| |||||||||| Sbjct: 96035 tttggttccaatttcaaatatcac 96012
>emb|BX825208.1|CNS0A69C Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL20ZB07 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 675 Score = 40.1 bits (20), Expect = 6.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 170 tattacatgaagactgggacttgcaaat 197 |||||||||||||| || |||||||||| Sbjct: 432 tattacatgaagacaggaacttgcaaat 459
>gb|AC079902.15| Homo sapiens X BAC RP11-352L18 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 91428 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 325 atgcaagtttggttcgacat 344 |||||||||||||||||||| Sbjct: 40639 atgcaagtttggttcgacat 40658
>emb|AL928930.9| Mouse DNA sequence from clone RP23-386P7 on chromosome 2, complete sequence Length = 155721 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 230 caagatggttctgtgcagcc 249 |||||||||||||||||||| Sbjct: 86277 caagatggttctgtgcagcc 86258 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,297,155 Number of Sequences: 3902068 Number of extensions: 3297155 Number of successful extensions: 56286 Number of sequences better than 10.0: 49 Number of HSP's better than 10.0 without gapping: 50 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 56109 Number of HSP's gapped (non-prelim): 171 length of query: 447 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 425 effective length of database: 17,147,199,772 effective search space: 7287559903100 effective search space used: 7287559903100 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)