>MIER1_CHICK (Q5ZKT9) Mesoderm induction early response protein 1 (Mi-er1)|
          Length = 513

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 292 PPKSTNSNVHSSDAEPDETDTAESNNLDPNGP 197
           PP ++NS+   S+ E   T ++  N L  NGP
Sbjct: 381 PPTASNSSTSQSEREDSTTSSSNQNGLSANGP 412

>LIN2_CAEEL (P54936) Protein lin-2 (Abnormal cell lineage protein 2)|
          Length = 961

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 18/53 (33%), Positives = 29/53 (54%)
 Frame = +1

Query: 28  LVERGLF*NGSRILHGPDT*P*PTRHSILRPLDWQV*RNH*GLTLQTIIQGLK 186
           ++E+G F N  RILHGP       R  +LR ++  + R H GL  + I + ++
Sbjct: 22  VIEQGPFSNVYRILHGPS-----NRKFLLRSINLNLFRQHTGLGFEEIDEEIR 69

>NOVA1_MOUSE (Q9JKN6) RNA-binding protein Nova-1 (Neuro-oncological ventral|
           antigen 1) (Ventral neuron-specific protein 1)
           (Fragment)
          Length = 493

 Score = 30.0 bits (66), Expect = 2.4
 Identities = 23/86 (26%), Positives = 41/86 (47%)
 Frame = -1

Query: 352 NL*TEIISLMKASHTSRLNSPPKSTNSNVHSSDAEPDETDTAESNNLDPNGPTFAFSILE 173
           NL T  + L +A+ T  L +   S N    +++        A ++     G    F++  
Sbjct: 314 NLNTLGLGLSQAAATGALAAAAASANPAAAAANLLATYASEASASGSTAGGTAGTFALGS 373

Query: 172 LWSVRSSLNGFFIPASPMASK*SALL 95
           L +  ++ NG+F  ASP+A+  SA+L
Sbjct: 374 LAAATAATNGYFGAASPLAA--SAIL 397

>NOVA1_RAT (Q80WA4) RNA-binding protein Nova-1 (Neuro-oncological ventral|
           antigen 1) (Fragment)
          Length = 474

 Score = 30.0 bits (66), Expect = 2.4
 Identities = 23/86 (26%), Positives = 41/86 (47%)
 Frame = -1

Query: 352 NL*TEIISLMKASHTSRLNSPPKSTNSNVHSSDAEPDETDTAESNNLDPNGPTFAFSILE 173
           NL T  + L +A+ T  L +   S N    +++        A ++     G    F++  
Sbjct: 303 NLNTLGLGLSQAAATGALAAAAASANPAAAAANLLATYASEASASGSTAGGTAGTFALGS 362

Query: 172 LWSVRSSLNGFFIPASPMASK*SALL 95
           L +  ++ NG+F  ASP+A+  SA+L
Sbjct: 363 LAAATAATNGYFGAASPLAA--SAIL 386

>NOVA1_HUMAN (P51513) RNA-binding protein Nova-1 (Neuro-oncological ventral|
           antigen 1) (Onconeural ventral antigen 1)
           (Paraneoplastic Ri antigen) (Ventral neuron-specific
           protein 1)
          Length = 510

 Score = 30.0 bits (66), Expect = 2.4
 Identities = 23/86 (26%), Positives = 41/86 (47%)
 Frame = -1

Query: 352 NL*TEIISLMKASHTSRLNSPPKSTNSNVHSSDAEPDETDTAESNNLDPNGPTFAFSILE 173
           NL T  + L +A+ T  L +   S N    +++        A ++     G    F++  
Sbjct: 331 NLNTLGLGLSQAAATGALAAAAASANPAAAAANLLATYASEASASGSTAGGTAGTFALGS 390

Query: 172 LWSVRSSLNGFFIPASPMASK*SALL 95
           L +  ++ NG+F  ASP+A+  SA+L
Sbjct: 391 LAAATAATNGYFGAASPLAA--SAIL 414

>P72_MYCMS (P55801) Immunodominant protein p72 precursor|
          Length = 532

 Score = 29.6 bits (65), Expect = 3.1
 Identities = 13/57 (22%), Positives = 30/57 (52%)
 Frame = -1

Query: 376 SLGPYSRMNL*TEIISLMKASHTSRLNSPPKSTNSNVHSSDAEPDETDTAESNNLDP 206
           S+ P S ++  + +    + S+  + +  P+  N N   + ++PDE+   ++NN +P
Sbjct: 10  SILPISSISFLSVVSCSTRNSNAKQPDKKPEKPNENTPKTPSKPDESKQPDNNNTNP 66

>RBP2_MOUSE (Q9ERU9) Ran-binding protein 2 (RanBP2)|
          Length = 3053

 Score = 29.3 bits (64), Expect = 4.0
 Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
 Frame = -1

Query: 340  EIISLMKASHTSRLNSPPKSTNSNVHSSDAE-PDETDTAESNNLDPNGPTFAFSILELW- 167
            E+ S +K   T   N   K T+    SS A+ P  +DT    N D  GP   +   +L  
Sbjct: 2009 EMKSGLKDFKTFLTNDQVKVTDEENASSGADAPSASDTTAKQNPDNTGPALEWDNYDLRE 2068

Query: 166  -SVRSSLNGFFIPASPMAS 113
             ++  S++   + ASP+AS
Sbjct: 2069 DALDDSVSSSSVHASPLAS 2087

>DPB3_DEBHA (Q6BX14) DNA polymerase epsilon subunit C (EC 2.7.7.7) (DNA|
           polymerase II subunit C)
          Length = 277

 Score = 28.9 bits (63), Expect = 5.3
 Identities = 15/59 (25%), Positives = 32/59 (54%)
 Frame = -1

Query: 379 SSLGPYSRMNL*TEIISLMKASHTSRLNSPPKSTNSNVHSSDAEPDETDTAESNNLDPN 203
           SS  P S +N  +++ +++  S+ +   +PP  +N+N    + E +E +  + N + PN
Sbjct: 2   SSPMPQSSLNN-SQVANMIDESNETPSTTPPMISNTNTPVPEIEMEEPNAPQDNTVAPN 59

>MIER1_HUMAN (Q8N108) Mesoderm induction early response protein 1 (Mi-er1)|
           (hmi-er1) (Early response 1) (Er1)
          Length = 536

 Score = 28.9 bits (63), Expect = 5.3
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -1

Query: 292 PPKSTNSNVHSSDAEPDETDTAESNNLDPNGP 197
           PP ++NS+   S+ E     TA  N +  NGP
Sbjct: 403 PPTASNSSNSQSEKEDGTVSTANQNGVSSNGP 434

>ALLT_SPETR (O54762) Alpha-1-antitrypsin-like protein GS55-LT precursor|
          Length = 413

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 16/63 (25%), Positives = 29/63 (46%)
 Frame = -1

Query: 259 SDAEPDETDTAESNNLDPNGPTFAFSILELWSVRSSLNGFFIPASPMASK*SALLVKVKC 80
           SDA   + + + S+ + PN   FAFS+  + +  S+    F     +A+   +L +  K 
Sbjct: 30  SDAPKHDQENSASHKIAPNLAEFAFSLYRVLAHESNTTNIFFSPVSIATALGSLSLGTKA 89

Query: 79  PGH 71
             H
Sbjct: 90  DTH 92

>GSPJ_XANCP (P31740) General secretion pathway protein J precursor|
          Length = 211

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 24/84 (28%), Positives = 45/84 (53%), Gaps = 4/84 (4%)
 Frame = -2

Query: 312 IHLVSILRQNQQTLMSTHLTLNQM-KQIQQSQITWTQ-MAQPLPFQSLNY-GL*GQASMV 142
           +H VS++   +Q  ++  LT+ Q  K+I++      + +A  +   S  Y GL  Q+  +
Sbjct: 106 LHDVSVVGDGEQRTLTIALTMLQSGKEIEEGNALPAETLADDVQQVSFRYRGLDPQSGAL 165

Query: 141 SSYLPVQWP-QNRVPCWSRLSVRA 73
           S +LP QW   +R+P   R+ +R+
Sbjct: 166 SGWLP-QWEWHDRLPLLVRIDIRS 188

>BTUB_ECOL6 (Q8CVJ0) Vitamin B12 transporter btuB precursor (Cobalamin|
           receptor) (Outer membrane cobalamin translocator)
          Length = 614

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 330 EIISVYRFIREYGPSDDDPTIHHVYGAH 413
           E I  YRFI  YG S   P +  +YG++
Sbjct: 398 EFIEGYRFIASYGTSYKAPNLGQLYGSY 425

>Y493_MYCBO (P64704) Hypothetical protein Mb0493|
          Length = 451

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = -1

Query: 205 NGPTFAFS-ILELWSVRSSLNGFFIPASPMAS 113
           + P   +S I E W+VR S NG FI A+PM++
Sbjct: 317 SNPAAGYSHIHERWAVRISNNGEFIHANPMSA 348

>Y483_MYCTU (P64703) Hypothetical protein Rv0483/MT0501|
          Length = 451

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = -1

Query: 205 NGPTFAFS-ILELWSVRSSLNGFFIPASPMAS 113
           + P   +S I E W+VR S NG FI A+PM++
Sbjct: 317 SNPAAGYSHIHERWAVRISNNGEFIHANPMSA 348

>PAC11_YEAST (P40960) Protein PAC11|
          Length = 533

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 18/59 (30%), Positives = 25/59 (42%)
 Frame = -1

Query: 385 GSSSLGPYSRMNL*TEIISLMKASHTSRLNSPPKSTNSNVHSSDAEPDETDTAESNNLD 209
           GS    P S      E+I+  K   T ++       N N  ++DA   ET  A+ NN D
Sbjct: 58  GSKIQEPQSAYLRRKEVITYDKGIQTDQIEEEQLQENENHTTTDAVAIETTAADENNKD 116

>COX1_TRYBB (P04371) Cytochrome c oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c|
           oxidase polypeptide I)
          Length = 549

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +1

Query: 307 MYGLPSSMKLFLFIGSFVNMDQAMMIQPFIMYM 405
           + GLP+ +KLF +I SF+  D  +  + + +YM
Sbjct: 313 LIGLPTCIKLFNWIYSFLFTDMCICFEIYFIYM 345

>HYPB_RHILV (P28155) Hydrogenase nickel incorporation protein hypB|
          Length = 299

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -2

Query: 411 GHHIHDEWLDHHRLVHIHE 355
           GHH HD   DHHR  H H+
Sbjct: 31  GHHDHDHDHDHHRGDHEHD 49

>MIER1_XENLA (Q7T105) Mesoderm induction early response protein 1 (Mi-er1)|
           (Xmi-er1) (Early response 1) (Er1)
          Length = 495

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
 Frame = -1

Query: 322 KASHTSRLNSPPKST-NSNVHSSDAEPDETDTAESNNLDPNGPTFAFSILELWSVRSSLN 146
           +++ +SR  SPP +T NSN   S+ E         N +  NGP    +  +       LN
Sbjct: 359 ESATSSRAPSPPPTTSNSNTSQSEKEDCTASNNTQNGVSVNGPCAITAYKDEAKQGVHLN 418

Query: 145 GFFIPASPMAS 113
           G  I +S  +S
Sbjct: 419 GPTISSSDPSS 429


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,942,933
Number of Sequences: 219361
Number of extensions: 1320972
Number of successful extensions: 3591
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 3511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3589
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2336739400
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)