ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal14o05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_477400.1| Oryza sativa (japonica cultivar-group), mRNA 82 3e-12
2dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 82 3e-12
3dbj|AP005172.4| Oryza sativa (japonica cultivar-group) genomic D... 82 3e-12
4dbj|AK102876.1| Oryza sativa (japonica cultivar-group) cDNA clon... 82 3e-12
5gb|AC105968.14| Mus musculus chromosome 18, clone RP23-265P4, co... 52 0.002
6gb|AC132351.3| Mus musculus BAC clone RP24-95F24 from chromosome... 52 0.002
7ref|XM_732947.1| Plasmodium chabaudi chabaudi hypothetical prote... 44 0.60
8gb|AC092978.10| Homo sapiens 3 BAC RP11-340E6 (Roswell Park Canc... 44 0.60
9emb|AL731732.15| Mouse DNA sequence from clone RP23-100F3 on chr... 44 0.60
10ref|XM_639626.1| Dictyostelium discoideum hypothetical protein (... 42 2.4
11ref|XM_639440.1| Dictyostelium discoideum hypothetical protein (... 42 2.4
12gb|AC104192.11| Mus musculus chromosome 5, clone RP24-439L10, co... 42 2.4
13gb|AC164607.4| Mus musculus chromosome 5, clone RP23-455A10, com... 42 2.4
14gb|AC008309.8| Drosophila melanogaster clone BACR06L13, complete... 42 2.4
15gb|AC008308.9| Drosophila melanogaster clone BACR10M16, complete... 42 2.4
16gb|AC142114.3| Mus musculus BAC clone RP23-421C24 from chromosom... 42 2.4
17gb|AC163746.5| Mus musculus BAC clone RP23-394B5 from chromosome... 42 2.4
18gb|AC163687.5| Mus musculus BAC clone RP23-3H13 from chromosome ... 42 2.4
19emb|CR555306.1| Azoarcus sp. EbN1 complete genome 42 2.4
20emb|AL731788.8| Zebrafish DNA sequence from clone RP71-1G13 in l... 42 2.4
21gb|AY060246.1| Drosophila melanogaster GH06646 full length cDNA 42 2.4
22gb|AC155948.12| Mus musculus 6 BAC RP24-98H19 (Roswell Park Canc... 42 2.4
23gb|AC116984.2| Dictyostelium discoideum chromosome 2 map 2567470... 42 2.4
24gb|AE003734.3| Drosophila melanogaster chromosome 3R, section 72... 42 2.4
25emb|CR450845.14| Zebrafish DNA sequence from clone DKEY-63K7 in ... 42 2.4
26gb|AC142266.3| Mus musculus BAC clone RP24-380K14 from 14, compl... 42 2.4
27gb|AC167359.4| Mus musculus BAC clone RP24-94F12 from chromosome... 40 9.3
28ref|XM_639018.1| Dictyostelium discoideum hypothetical protein (... 40 9.3
29gb|AC114653.11| Mus musculus chromosome 5, clone RP24-158G19, co... 40 9.3
30gb|AY596296.1| Haloarcula marismortui ATCC 43049 plasmid pNG700,... 40 9.3
31ref|XM_422072.1| PREDICTED: Gallus gallus similar to Ku (p70/p80... 40 9.3
32gb|AC137150.11| Mus musculus chromosome 18, clone RP23-342A15, c... 40 9.3
33gb|AC147566.2| Mus musculus BAC clone RP23-106L10 from chromosom... 40 9.3
34gb|AC153360.6| Mus musculus BAC clone RP23-321I6 from chromosome... 40 9.3
35gb|BC046933.1| Homo sapiens transcription factor-like 5 (basic h... 40 9.3
36gb|CP000272.1| Burkholderia xenovorans LB400 chromosome 3, compl... 40 9.3
37emb|AL137118.20| Human DNA sequence from clone RP11-108P5 on chr... 40 9.3
38emb|AL135933.11| Human DNA sequence from clone RP4-774E4 on chro... 40 9.3
39emb|AL035669.43|HS885L7 Human DNA sequence from clone RP5-885L7 ... 40 9.3
40emb|AL031684.14|HS917N8 Human DNA sequence from clone RP5-917N8 ... 40 9.3
41emb|AL008723.8|HS90G24 Human DNA sequence from clone RP1-90G24 o... 40 9.3
42gb|AC079059.10| Homo sapiens chromosome 18, clone RP11-281L12, c... 40 9.3
43emb|CR522870.1| Desulfotalea psychrophila LSv54 chromosome 40 9.3
44emb|BX294133.1| Pirellula sp. strain 1 complete genome; segment ... 40 9.3
45emb|AL627283.1| Salmonella enterica serovar Typhi (Salmonella ty... 40 9.3
46emb|AL844607.4| Mouse DNA sequence from clone RP24-280G18 on chr... 40 9.3
47gb|AC145339.34| Pan troglodytes clone rp43-58e4, complete sequence 40 9.3
48gb|AC145336.18| Pan troglodytes clone rp43-33e5, complete sequence 40 9.3
49gb|CP000133.1| Rhizobium etli CFN 42, complete genome 40 9.3
50gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome 40 9.3
51gb|AC087173.5| Homo sapiens chromosome 8, clone RP11-713C9, comp... 40 9.3
52gb|AC068388.7| Homo sapiens chromosome 3, clone RP11-296M9, comp... 40 9.3
53gb|AC021594.9| Homo sapiens, clone RP11-154H12, complete sequence 40 9.3
54gb|AC087366.5| Homo sapiens chromosome 8, clone RP11-621J21, com... 40 9.3
55gb|AC159032.2| Pan troglodytes BAC clone CH251-358H13 from chrom... 40 9.3
56gb|AC008758.7| Homo sapiens chromosome 19 clone CTD-3105H18, com... 40 9.3
57ref|XM_628533.1| Cryptosporidium parvum Iowa II RNA polymerase b... 40 9.3
58gb|AC149134.2| Medicago truncatula, complete sequence 40 9.3
59dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.3
60gb|AC158660.4| Mus musculus 6 BAC RP23-387H1 (Roswell Park Cance... 40 9.3
61gb|AC116957.2| Dictyostelium discoideum chromosome 2 map 1685067... 40 9.3
62dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 40 9.3
63dbj|AP004869.3| Oryza sativa (japonica cultivar-group) genomic D... 40 9.3
64emb|BX119963.5| Zebrafish DNA sequence from clone DKEY-6A5 in li... 40 9.3
65emb|BX470071.4| Zebrafish DNA sequence from clone DKEY-233P4 in ... 40 9.3
66gb|AC122785.17| Mus musculus chromosome 3, clone RP24-247G11, co... 40 9.3
67gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi... 40 9.3
68gb|AC151999.5| Mus musculus BAC clone RP23-98D11 from chromosome... 40 9.3
69gb|AC147641.3| Mus musculus BAC clone RP23-43L22 from 14, comple... 40 9.3 
>ref|XM_477400.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2122

 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 125/153 (81%)
 Strand = Plus / Plus

                                                                       
Query: 522 ggcagaaaagccagtaaacattagaaacctgctgggtggcatagttgctatcattggtcg 581
           |||||| ||||| |||||| ||||||| |||||||||||  || |||| |||||  ||||
Sbjct: 650 ggcagataagccggtaaaccttagaaatctgctgggtggtttaattgcaatcatcagtcg 709

                                                                       
Query: 582 cacttgcaaaaatgatgaaattcaacaatcaaaggacactaagagtagcgtctcattctt 641
                ||||||||  |||||||||||   ||||||||||||||  ||| ||| |||||||
Sbjct: 710 tggcggcaaaaattctgaaattcaaccgccaaaggacactaagtctagtgtcgcattctt 769

                                            
Query: 642 ggggtcaagtagtgatggagatacattcttgca 674
            |||||| |||| |||||||| |||||||||||
Sbjct: 770 agggtcaggtagcgatggagaaacattcttgca 802



 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 60/68 (88%)
 Strand = Plus / Plus

                                                                       
Query: 301 aaggatcagatccactccaaggttatgggcacgataggcaatgtcatcaactcaattgat 360
           |||||| ||||||| ||||||||| |||||||||||||  |||| || |||||| |||||
Sbjct: 423 aaggatgagatccaatccaaggttttgggcacgataggggatgtgatgaactcatttgat 482

                   
Query: 361 ccaaagtc 368
           ||||||||
Sbjct: 483 ccaaagtc 490
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 125/153 (81%)
 Strand = Plus / Plus

                                                                            
Query: 522      ggcagaaaagccagtaaacattagaaacctgctgggtggcatagttgctatcattggtcg 581
                |||||| ||||| |||||| ||||||| |||||||||||  || |||| |||||  ||||
Sbjct: 10097337 ggcagataagccggtaaaccttagaaatctgctgggtggtttaattgcaatcatcagtcg 10097396

                                                                            
Query: 582      cacttgcaaaaatgatgaaattcaacaatcaaaggacactaagagtagcgtctcattctt 641
                     ||||||||  |||||||||||   ||||||||||||||  ||| ||| |||||||
Sbjct: 10097397 tggcggcaaaaattctgaaattcaaccgccaaaggacactaagtctagtgtcgcattctt 10097456

                                                 
Query: 642      ggggtcaagtagtgatggagatacattcttgca 674
                 |||||| |||| |||||||| |||||||||||
Sbjct: 10097457 agggtcaggtagcgatggagaaacattcttgca 10097489



 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 60/68 (88%)
 Strand = Plus / Plus

                                                                            
Query: 301      aaggatcagatccactccaaggttatgggcacgataggcaatgtcatcaactcaattgat 360
                |||||| ||||||| ||||||||| |||||||||||||  |||| || |||||| |||||
Sbjct: 10097110 aaggatgagatccaatccaaggttttgggcacgataggggatgtgatgaactcatttgat 10097169

                        
Query: 361      ccaaagtc 368
                ||||||||
Sbjct: 10097170 ccaaagtc 10097177
to top
>dbj|AP005172.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBb0002J01
          Length = 130152

 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 125/153 (81%)
 Strand = Plus / Plus

                                                                         
Query: 522   ggcagaaaagccagtaaacattagaaacctgctgggtggcatagttgctatcattggtcg 581
             |||||| ||||| |||||| ||||||| |||||||||||  || |||| |||||  ||||
Sbjct: 70013 ggcagataagccggtaaaccttagaaatctgctgggtggtttaattgcaatcatcagtcg 70072

                                                                         
Query: 582   cacttgcaaaaatgatgaaattcaacaatcaaaggacactaagagtagcgtctcattctt 641
                  ||||||||  |||||||||||   ||||||||||||||  ||| ||| |||||||
Sbjct: 70073 tggcggcaaaaattctgaaattcaaccgccaaaggacactaagtctagtgtcgcattctt 70132

                                              
Query: 642   ggggtcaagtagtgatggagatacattcttgca 674
              |||||| |||| |||||||| |||||||||||
Sbjct: 70133 agggtcaggtagcgatggagaaacattcttgca 70165



 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 60/68 (88%)
 Strand = Plus / Plus

                                                                         
Query: 301   aaggatcagatccactccaaggttatgggcacgataggcaatgtcatcaactcaattgat 360
             |||||| ||||||| ||||||||| |||||||||||||  |||| || |||||| |||||
Sbjct: 69786 aaggatgagatccaatccaaggttttgggcacgataggggatgtgatgaactcatttgat 69845

                     
Query: 361   ccaaagtc 368
             ||||||||
Sbjct: 69846 ccaaagtc 69853
to top
>dbj|AK102876.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033112D24, full
           insert sequence
          Length = 2122

 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 125/153 (81%)
 Strand = Plus / Plus

                                                                       
Query: 522 ggcagaaaagccagtaaacattagaaacctgctgggtggcatagttgctatcattggtcg 581
           |||||| ||||| |||||| ||||||| |||||||||||  || |||| |||||  ||||
Sbjct: 650 ggcagataagccggtaaaccttagaaatctgctgggtggtttaattgcaatcatcagtcg 709

                                                                       
Query: 582 cacttgcaaaaatgatgaaattcaacaatcaaaggacactaagagtagcgtctcattctt 641
                ||||||||  |||||||||||   ||||||||||||||  ||| ||| |||||||
Sbjct: 710 tggcggcaaaaattctgaaattcaaccgccaaaggacactaagtctagtgtcgcattctt 769

                                            
Query: 642 ggggtcaagtagtgatggagatacattcttgca 674
            |||||| |||| |||||||| |||||||||||
Sbjct: 770 agggtcaggtagcgatggagaaacattcttgca 802



 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 60/68 (88%)
 Strand = Plus / Plus

                                                                       
Query: 301 aaggatcagatccactccaaggttatgggcacgataggcaatgtcatcaactcaattgat 360
           |||||| ||||||| ||||||||| |||||||||||||  |||| || |||||| |||||
Sbjct: 423 aaggatgagatccaatccaaggttttgggcacgataggggatgtgatgaactcatttgat 482

                   
Query: 361 ccaaagtc 368
           ||||||||
Sbjct: 483 ccaaagtc 490
to top
>gb|AC105968.14| Mus musculus chromosome 18, clone RP23-265P4, complete sequence
          Length = 210819

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                        
Query: 481    tatgaatgccctgatgactattggga 506
              ||||||||||||||||||||||||||
Sbjct: 203011 tatgaatgccctgatgactattggga 202986
to top
>gb|AC132351.3| Mus musculus BAC clone RP24-95F24 from chromosome 18, complete sequence
          Length = 186726

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                       
Query: 481   tatgaatgccctgatgactattggga 506
             ||||||||||||||||||||||||||
Sbjct: 98051 tatgaatgccctgatgactattggga 98026
to top
>ref|XM_732947.1| Plasmodium chabaudi chabaudi hypothetical protein (PC000475.04.0)
           partial mRNA
          Length = 1017

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 200 agcagaccagaaattatattta 221
           ||||||||||||||||||||||
Sbjct: 780 agcagaccagaaattatattta 759
to top
>gb|AC092978.10| Homo sapiens 3 BAC RP11-340E6 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 58001

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 152   ttgttgttgttgttcaacacaa 173
             ||||||||||||||||||||||
Sbjct: 27910 ttgttgttgttgttcaacacaa 27889
to top
>emb|AL731732.15| Mouse DNA sequence from clone RP23-100F3 on chromosome X, complete
              sequence
          Length = 230674

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 144    gttgccaattgttgttgttgtt 165
              ||||||||||||||||||||||
Sbjct: 122109 gttgccaattgttgttgttgtt 122088
to top
>ref|XM_639626.1| Dictyostelium discoideum hypothetical protein (DDB0168059), partial
            mRNA
          Length = 6147

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 151  attgttgttgttgttcaacac 171
            |||||||||||||||||||||
Sbjct: 3022 attgttgttgttgttcaacac 3002
to top
>ref|XM_639440.1| Dictyostelium discoideum hypothetical protein (DDB0217329), partial
            mRNA
          Length = 6147

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 151  attgttgttgttgttcaacac 171
            |||||||||||||||||||||
Sbjct: 3022 attgttgttgttgttcaacac 3002
to top
>gb|AC104192.11| Mus musculus chromosome 5, clone RP24-439L10, complete sequence
          Length = 155839

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 146   tgccaattgttgttgttgttc 166
             |||||||||||||||||||||
Sbjct: 58179 tgccaattgttgttgttgttc 58199
to top
>gb|AC164607.4| Mus musculus chromosome 5, clone RP23-455A10, complete sequence
          Length = 183927

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 146   tgccaattgttgttgttgttc 166
             |||||||||||||||||||||
Sbjct: 64317 tgccaattgttgttgttgttc 64297
to top
>gb|AC008309.8| Drosophila melanogaster clone BACR06L13, complete sequence
          Length = 163325

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 144   gttgccaattgttgttgttgt 164
             |||||||||||||||||||||
Sbjct: 74781 gttgccaattgttgttgttgt 74761
to top
>gb|AC008308.9| Drosophila melanogaster clone BACR10M16, complete sequence
          Length = 196423

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 144  gttgccaattgttgttgttgt 164
            |||||||||||||||||||||
Sbjct: 7062 gttgccaattgttgttgttgt 7082
to top
>gb|AC142114.3| Mus musculus BAC clone RP23-421C24 from chromosome 14, complete
             sequence
          Length = 196408

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 144   gttgccaattgttgttgttgttcaa 168
             |||| ||||||||||||||||||||
Sbjct: 50374 gttgtcaattgttgttgttgttcaa 50350
to top
>gb|AC163746.5| Mus musculus BAC clone RP23-394B5 from chromosome 17, complete sequence
          Length = 199852

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 152   ttgttgttgttgttcaacaca 172
             |||||||||||||||||||||
Sbjct: 18813 ttgttgttgttgttcaacaca 18833
to top
>gb|AC163687.5| Mus musculus BAC clone RP23-3H13 from chromosome 17, complete sequence
          Length = 220643

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 152    ttgttgttgttgttcaacaca 172
              |||||||||||||||||||||
Sbjct: 143195 ttgttgttgttgttcaacaca 143215
to top
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 3      cggcacgaggcgacgacgacg 23
              |||||||||||||||||||||
Sbjct: 714239 cggcacgaggcgacgacgacg 714259
to top
>emb|AL731788.8| Zebrafish DNA sequence from clone RP71-1G13 in linkage group 12
             Contains part of a novel gene, a novel gene similar to
             PTEN (phosphatase and tensin homolog), a novel LINE
             element with a potentially active ORF1 and four CpG
             islands, complete sequence
          Length = 165909

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 251   aggttcctttttatcactcgt 271
             |||||||||||||||||||||
Sbjct: 20368 aggttcctttttatcactcgt 20388
to top
>gb|AY060246.1| Drosophila melanogaster GH06646 full length cDNA
          Length = 4924

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 144  gttgccaattgttgttgttgt 164
            |||||||||||||||||||||
Sbjct: 3314 gttgccaattgttgttgttgt 3334
to top
>gb|AC155948.12| Mus musculus 6 BAC RP24-98H19 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 176892

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 511   gaactgcagagggcagaaaag 531
             |||||||||||||||||||||
Sbjct: 53716 gaactgcagagggcagaaaag 53696
to top
>gb|AC116984.2| Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4,
              complete sequence
          Length = 541399

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 151    attgttgttgttgttcaacac 171
              |||||||||||||||||||||
Sbjct: 308657 attgttgttgttgttcaacac 308637
to top
>gb|AE003734.3| Drosophila melanogaster chromosome 3R, section 72 of 118 of the complete
              sequence
          Length = 250533

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 144    gttgccaattgttgttgttgt 164
              |||||||||||||||||||||
Sbjct: 115240 gttgccaattgttgttgttgt 115220
to top
>emb|CR450845.14| Zebrafish DNA sequence from clone DKEY-63K7 in linkage group 2, complete
              sequence
          Length = 232604

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 148    ccaattgttgttgttgttcaacacaacta 176
              |||||||||||||| || |||||||||||
Sbjct: 188466 ccaattgttgttgtggtacaacacaacta 188494
to top
>gb|AC142266.3| Mus musculus BAC clone RP24-380K14 from 14, complete sequence
          Length = 185704

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 144  gttgccaattgttgttgttgttcaa 168
            |||| ||||||||||||||||||||
Sbjct: 2773 gttgtcaattgttgttgttgttcaa 2797
to top
>gb|AC167359.4| Mus musculus BAC clone RP24-94F12 from chromosome 8, complete
            sequence
          Length = 176523

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 152  ttgttgttgttgttcaacac 171
            ||||||||||||||||||||
Sbjct: 7839 ttgttgttgttgttcaacac 7820
to top
>ref|XM_639018.1| Dictyostelium discoideum hypothetical protein (DDB0217537), partial
            mRNA
          Length = 3927

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 146  tgccaattgttgttgttgtt 165
            ||||||||||||||||||||
Sbjct: 2154 tgccaattgttgttgttgtt 2135
to top
>gb|AC114653.11| Mus musculus chromosome 5, clone RP24-158G19, complete sequence
          Length = 164313

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 146   tgccaattgttgttgttgtt 165
             ||||||||||||||||||||
Sbjct: 74578 tgccaattgttgttgttgtt 74597
to top
>gb|AY596296.1| Haloarcula marismortui ATCC 43049 plasmid pNG700, complete sequence
          Length = 410554

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 47     ttcttcgtcttcgtcgcgct 66
              ||||||||||||||||||||
Sbjct: 318876 ttcttcgtcttcgtcgcgct 318857
to top
>ref|XM_422072.1| PREDICTED: Gallus gallus similar to Ku (p70/p80) protein (LOC424222),
            mRNA
          Length = 2692

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 285  agctgaaagcagtctcaaggatcagatc 312
            ||||||||||||| |||||||| |||||
Sbjct: 2498 agctgaaagcagtatcaaggataagatc 2471
to top
>gb|AC137150.11| Mus musculus chromosome 18, clone RP23-342A15, complete sequence
          Length = 213513

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 518    agagggcagaaaagccagtaaacattag 545
              ||||||| ||||||||||||| ||||||
Sbjct: 158509 agagggctgaaaagccagtaatcattag 158482
to top
>gb|AC147566.2| Mus musculus BAC clone RP23-106L10 from chromosome 14, complete
           sequence
          Length = 174050

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 591 aaatgatgaaattcaacaat 610
           ||||||||||||||||||||
Sbjct: 26  aaatgatgaaattcaacaat 7
to top
>gb|AC153360.6| Mus musculus BAC clone RP23-321I6 from chromosome 10, complete sequence
          Length = 233014

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 532    ccagtaaacattagaaacct 551
              ||||||||||||||||||||
Sbjct: 158896 ccagtaaacattagaaacct 158915
to top
>gb|BC046933.1| Homo sapiens transcription factor-like 5 (basic helix-loop-helix),
            mRNA (cDNA clone MGC:46135 IMAGE:5549053), complete cds
          Length = 2466

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 21   acgacgcccagcttcttccc 40
            ||||||||||||||||||||
Sbjct: 2179 acgacgcccagcttcttccc 2160
to top
>gb|CP000272.1| Burkholderia xenovorans LB400 chromosome 3, complete sequence
          Length = 1471779

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 41     cgccggttcttcgtcttcgt 60
              ||||||||||||||||||||
Sbjct: 922430 cgccggttcttcgtcttcgt 922449
to top
>emb|AL137118.20| Human DNA sequence from clone RP11-108P5 on chromosome 13q14.12-21.1
              Contains the CYSLTR2 gene for cysteinyl leukotriene
              receptor 2 (CYSLT2, CYSLT2R), complete sequence
          Length = 162446

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 300    caaggatcagatccactcca 319
              ||||||||||||||||||||
Sbjct: 155703 caaggatcagatccactcca 155684
to top
>emb|AL135933.11| Human DNA sequence from clone RP4-774E4 on chromosome 11p13-14.2
             Contains a pseudogene similar to ribosomal protein L7a,
             STSs and GSSs, complete sequence
          Length = 111135

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 385   tgggaaacagctggaaatgc 404
             ||||||||||||||||||||
Sbjct: 56189 tgggaaacagctggaaatgc 56170
to top
>emb|AL035669.43|HS885L7 Human DNA sequence from clone RP5-885L7 on chromosome 20q13.2-13.33
             Contains the 3' end of the NTSR1 gene for high affinity
             neurotensin receptor 1, the C20orf20 gene, the OGFR gene
             for opioid growth factor receptor, the COL9A3 gene for
             collagen IX alpha 3, the C20orf143 gene, the TCFL5 gene
             for basic helix-loop-helix transcription factor-like 5,
             the ARF4P2 gene for ADP-ribosylation factor 4 pseudogene
             2, the 3' end of the DATF1 gene for death associated
             transcription factor 1, two novel genes and seven CpG
             islands, complete sequence
          Length = 160241

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 21    acgacgcccagcttcttccc 40
             ||||||||||||||||||||
Sbjct: 94587 acgacgcccagcttcttccc 94606
to top
>emb|AL031684.14|HS917N8 Human DNA sequence from clone RP5-917N8 on chromosome 20p11.22-12.1
             Contains STSs and GSSs, complete sequence
          Length = 143712

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 582   cacttgcaaaaatgatgaaa 601
             ||||||||||||||||||||
Sbjct: 63051 cacttgcaaaaatgatgaaa 63070
to top
>emb|AL008723.8|HS90G24 Human DNA sequence from clone RP1-90G24 on chromosome 22 Contains the
             5' end of a novel gene, the RFPL2 gene for ret finger
             protein-like 2, a Immunoglobulin Lambda Light Chain C
             region (IGLC) pseudogene (IGLCOR22-1), the SLC5A4 gene for
             solute carrier family 5 (low affinity glucose
             cotransporter), member 4 and a pseudogene similar to part
             of cleavage and polyadenylation specific factor 1, 160kDa
             (CPSF1), complete sequence
          Length = 154414

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 152   ttgttgttgttgttcaacac 171
             ||||||||||||||||||||
Sbjct: 80647 ttgttgttgttgttcaacac 80628
to top
>gb|AC079059.10| Homo sapiens chromosome 18, clone RP11-281L12, complete sequence
          Length = 145993

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 377   agcaagcatgggaaacagctggaa 400
             |||||| |||||||||||||||||
Sbjct: 65659 agcaaggatgggaaacagctggaa 65682
to top
>emb|CR522870.1| Desulfotalea psychrophila LSv54 chromosome
          Length = 3523383

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 589     aaaaatgatgaaattcaaca 608
               ||||||||||||||||||||
Sbjct: 2370532 aaaaatgatgaaattcaaca 2370513
to top
>emb|BX294133.1| Pirellula sp. strain 1 complete genome; segment 1/24
          Length = 311050

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 143    ggttgccaattgttgttgtt 162
              ||||||||||||||||||||
Sbjct: 280984 ggttgccaattgttgttgtt 280965
to top
>emb|AL627283.1| Salmonella enterica serovar Typhi (Salmonella typhi) strain CT18,
              complete chromosome; segment 19/20
          Length = 249050

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 85     cgcgtcgcagctgcggtggt 104
              ||||||||||||||||||||
Sbjct: 131403 cgcgtcgcagctgcggtggt 131384
to top
>emb|AL844607.4| Mouse DNA sequence from clone RP24-280G18 on chromosome 4, complete
              sequence
          Length = 160298

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 146    tgccaattgttgttgttgtt 165
              ||||||||||||||||||||
Sbjct: 126817 tgccaattgttgttgttgtt 126798
to top
>gb|AC145339.34| Pan troglodytes clone rp43-58e4, complete sequence
          Length = 150845

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 152    ttgttgttgttgttcaacac 171
              ||||||||||||||||||||
Sbjct: 146587 ttgttgttgttgttcaacac 146606
to top
>gb|AC145336.18| Pan troglodytes clone rp43-33e5, complete sequence
          Length = 155317

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 152   ttgttgttgttgttcaacac 171
             ||||||||||||||||||||
Sbjct: 98917 ttgttgttgttgttcaacac 98936
to top
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome
          Length = 4381608

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 126    aatttcccggcggcgatggttgcc 149
              |||||||||||||||||| |||||
Sbjct: 102397 aatttcccggcggcgatgattgcc 102374
to top
>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome
          Length = 4712337

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 441    gccgtttgattttgatggtg 460
              ||||||||||||||||||||
Sbjct: 137955 gccgtttgattttgatggtg 137936
to top
>gb|AC087173.5| Homo sapiens chromosome 8, clone RP11-713C9, complete sequence
          Length = 160250

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 589    aaaaatgatgaaattcaaca 608
              ||||||||||||||||||||
Sbjct: 116558 aaaaatgatgaaattcaaca 116577
to top
>gb|AC068388.7| Homo sapiens chromosome 3, clone RP11-296M9, complete sequence
          Length = 148372

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 385   tgggaaacagctggaaatgc 404
             ||||||||||||||||||||
Sbjct: 83900 tgggaaacagctggaaatgc 83881
to top
>gb|AC021594.9| Homo sapiens, clone RP11-154H12, complete sequence
          Length = 162336

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 377   agcaagcatgggaaacagctggaa 400
             |||||| |||||||||||||||||
Sbjct: 73289 agcaaggatgggaaacagctggaa 73312
to top
>gb|AC087366.5| Homo sapiens chromosome 8, clone RP11-621J21, complete sequence
          Length = 160454

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 589  aaaaatgatgaaattcaaca 608
            ||||||||||||||||||||
Sbjct: 4515 aaaaatgatgaaattcaaca 4534
to top
>gb|AC159032.2| Pan troglodytes BAC clone CH251-358H13 from chromosome unknown, complete
              sequence
          Length = 183880

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 152    ttgttgttgttgttcaacac 171
              ||||||||||||||||||||
Sbjct: 140064 ttgttgttgttgttcaacac 140045
to top
>gb|AC008758.7| Homo sapiens chromosome 19 clone CTD-3105H18, complete sequence
          Length = 224573

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 152   ttgttgttgttgttcaacac 171
             ||||||||||||||||||||
Sbjct: 86596 ttgttgttgttgttcaacac 86577
to top
>ref|XM_628533.1| Cryptosporidium parvum Iowa II RNA polymerase beta subunit
           (cgd7_3720), partial mRNA
          Length = 3534

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 589 aaaaatgatgaaattcaaca 608
           ||||||||||||||||||||
Sbjct: 34  aaaaatgatgaaattcaaca 53
to top
>gb|AC149134.2| Medicago truncatula, complete sequence
          Length = 133336

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 147   gccaattgttgttgttgttc 166
             ||||||||||||||||||||
Sbjct: 23618 gccaattgttgttgttgttc 23637
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 7       acgaggcgacgacgacgacg 26
               ||||||||||||||||||||
Sbjct: 5638605 acgaggcgacgacgacgacg 5638624
to top
>gb|AC158660.4| Mus musculus 6 BAC RP23-387H1 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 199439

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 238    acaaactctagtgaggttcc 257
              ||||||||||||||||||||
Sbjct: 143047 acaaactctagtgaggttcc 143028
to top
>gb|AC116957.2| Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4,
              complete sequence
          Length = 405682

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 146    tgccaattgttgttgttgtt 165
              ||||||||||||||||||||
Sbjct: 287381 tgccaattgttgttgttgtt 287362
to top
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 10      aggcgacgacgacgacgccc 29
               ||||||||||||||||||||
Sbjct: 4550537 aggcgacgacgacgacgccc 4550556
to top
>dbj|AP004869.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0419A09
          Length = 168064

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 7     acgaggcgacgacgacgacg 26
             ||||||||||||||||||||
Sbjct: 66341 acgaggcgacgacgacgacg 66360
to top
>emb|BX119963.5| Zebrafish DNA sequence from clone DKEY-6A5 in linkage group 4, complete
              sequence
          Length = 229125

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 276    cgtacaaggagctgaaagca 295
              ||||||||||||||||||||
Sbjct: 209442 cgtacaaggagctgaaagca 209423
to top
>emb|BX470071.4| Zebrafish DNA sequence from clone DKEY-233P4 in linkage group 20,
             complete sequence
          Length = 154409

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 152   ttgttgttgttgttcaacacaact 175
             ||||||||||||||||||| ||||
Sbjct: 19263 ttgttgttgttgttcaacaaaact 19240
to top
>gb|AC122785.17| Mus musculus chromosome 3, clone RP24-247G11, complete sequence
          Length = 134667

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 181   tggaagattgtgtggcttca 200
             ||||||||||||||||||||
Sbjct: 33269 tggaagattgtgtggcttca 33250
to top
>gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome
          Length = 4791961

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 85      cgcgtcgcagctgcggtggt 104
               ||||||||||||||||||||
Sbjct: 4586306 cgcgtcgcagctgcggtggt 4586287
to top
>gb|AC151999.5| Mus musculus BAC clone RP23-98D11 from chromosome 8, complete sequence
          Length = 229414

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 152    ttgttgttgttgttcaacac 171
              ||||||||||||||||||||
Sbjct: 211675 ttgttgttgttgttcaacac 211656
to top
>gb|AC147641.3| Mus musculus BAC clone RP23-43L22 from 14, complete sequence
          Length = 247999

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 591    aaatgatgaaattcaacaat 610
              ||||||||||||||||||||
Sbjct: 118264 aaatgatgaaattcaacaat 118245


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7,396,087
Number of Sequences: 3902068
Number of extensions: 7396087
Number of successful extensions: 601095
Number of sequences better than 10.0: 69
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 599020
Number of HSP's gapped (non-prelim): 2075
length of query: 682
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 659
effective length of database: 17,143,297,704
effective search space: 11297433186936
effective search space used: 11297433186936
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top