ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal14n14 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY596597.1| Saccharum officinarum clone SCCCLR1C01H06, complete sequence Length = 2436 Score = 276 bits (139), Expect = 5e-71 Identities = 317/377 (84%) Strand = Plus / Plus Query: 2 gtgaaacgtgctctcatccttggtatggagaatctgtcgtcgcagccattaatcctgaag 61 ||||| |||||||||| | ||||||||||||| | || ||||||||||||||||| ||| Sbjct: 1032 gtgaagcgtgctctcacctttggtatggagaacatatcctcgcagccattaatccttaag 1091 Query: 62 ttgttgaaggaatcaacgaagggttgtttgatcagttctaatcaagtgtcgaagggtttt 121 || |||||||| || | ||||| ||||||||| |||||||| | || ||||||||| Sbjct: 1092 ttattgaaggaggcagctgcaggttgcttgatcagtcctaatcaaatctcaaagggtttt 1151 Query: 122 tctcgggctgctgagagtgttgatgacctgagccttgatgttccttcagccaaaacgctt 181 ||||| |||||| |||||||||||||||| |||||| ||||||| || ||| | ||| Sbjct: 1152 tctcgactagctgagggtgttgatgacctgagtcttgatattccttctgctaaagctctt 1211 Query: 182 tttgacaagctgctttcagcagccatatctgaagggtggcttgatgcttcattctgtaaa 241 |||||||||||| ||||| |||| |||||||| || |||||||||||||| || ||||| Sbjct: 1212 tttgacaagctggtttcaacagctatatctgagggatggcttgatgcttcttttggtaaa 1271 Query: 242 tctgctgcacctgatgaagatgtgtggaatgcaagcagtgaaaaggtcaagcgttttaaa 301 |||||||| ||||| ||||| || ||| |||| || |||||| |||||||||||| Sbjct: 1272 tctgctgcccctgacgaagagatgcaaaatacaagtgctgtaaaggtgaagcgttttaaa 1331 Query: 302 gaagaatctggtcacataattcaggagtatttcctctcagatgacgncccagaacttatt 361 ||||||||||| ||||||||||| |||||||| ||||||||||| | ||||||||||||| Sbjct: 1332 gaagaatctggccacataattcatgagtattttctctcagatgatgtcccagaacttatt 1391 Query: 362 agaagccttnaagagct 378 |||||||| ||||||| Sbjct: 1392 cgaagccttgaagagct 1408
>ref|XM_472924.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1989 Score = 266 bits (134), Expect = 5e-68 Identities = 300/356 (84%) Strand = Plus / Plus Query: 26 atggagaatctgtcgtcgcagccattaatcctgaagttgttgaaggaatcaacgaagggt 85 |||||||||||||| || |||||||||||||||||| |||||||||||||||| ||| Sbjct: 883 atggagaatctgtcatcacagccattaatcctgaagctgttgaaggaatcaactgcaggt 942 Query: 86 tgtttgatcagttctaatcaagtgtcgaagggtttttctcgggctgctgagagtgttgat 145 || ||||||||||||||||| |||| |||||||||| |||| || |||||| ||||| Sbjct: 943 tgcctgatcagttctaatcaaatgtctaagggtttttgtcggctagcagagagtattgat 1002 Query: 146 gacctgagccttgatgttccttcagccaaaacgctttttgacaagctgctttcagcagcc 205 || |||||||||||| ||||||| ||||| | || |||||||||||| || | || Sbjct: 1003 gatctgagccttgatattccttctgccaagattctctttgacaagctggttctgactgct 1062 Query: 206 atatctgaagggtggcttgatgcttcattctgtaaatctgctgcacctgatgaagatgtg 265 | ||||||||| |||||||||||||||||| || |||| |||| ||| |||||||| || Sbjct: 1063 acatctgaaggatggcttgatgcttcattcactacatcttctgcccctaatgaagatatg 1122 Query: 266 tggaatgcaagcagtgaaaaggtcaagcgttttaaagaagaatctggtcacataattcag 325 | |||||||| |||||||| |||||| ||| |||||||||||||| |||||||| || Sbjct: 1123 cgaaatgcaagtggtgaaaagatcaagcatttcaaagaagaatctggacacataatccaa 1182 Query: 326 gagtatttcctctcagatgacgncccagaacttattagaagccttnaagagctttc 381 |||||||| ||||||||||| | ||||||||| |||| ||||||| |||||||||| Sbjct: 1183 gagtattttctctcagatgatgtcccagaactcattataagccttcaagagctttc 1238
>emb|AL606614.3|OSJN00047 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0011N17, complete sequence Length = 129498 Score = 266 bits (134), Expect = 5e-68 Identities = 300/356 (84%) Strand = Plus / Minus Query: 26 atggagaatctgtcgtcgcagccattaatcctgaagttgttgaaggaatcaacgaagggt 85 |||||||||||||| || |||||||||||||||||| |||||||||||||||| ||| Sbjct: 107677 atggagaatctgtcatcacagccattaatcctgaagctgttgaaggaatcaactgcaggt 107618 Query: 86 tgtttgatcagttctaatcaagtgtcgaagggtttttctcgggctgctgagagtgttgat 145 || ||||||||||||||||| |||| |||||||||| |||| || |||||| ||||| Sbjct: 107617 tgcctgatcagttctaatcaaatgtctaagggtttttgtcggctagcagagagtattgat 107558 Query: 146 gacctgagccttgatgttccttcagccaaaacgctttttgacaagctgctttcagcagcc 205 || |||||||||||| ||||||| ||||| | || |||||||||||| || | || Sbjct: 107557 gatctgagccttgatattccttctgccaagattctctttgacaagctggttctgactgct 107498 Query: 206 atatctgaagggtggcttgatgcttcattctgtaaatctgctgcacctgatgaagatgtg 265 | ||||||||| |||||||||||||||||| || |||| |||| ||| |||||||| || Sbjct: 107497 acatctgaaggatggcttgatgcttcattcactacatcttctgcccctaatgaagatatg 107438 Query: 266 tggaatgcaagcagtgaaaaggtcaagcgttttaaagaagaatctggtcacataattcag 325 | |||||||| |||||||| |||||| ||| |||||||||||||| |||||||| || Sbjct: 107437 cgaaatgcaagtggtgaaaagatcaagcatttcaaagaagaatctggacacataatccaa 107378 Query: 326 gagtatttcctctcagatgacgncccagaacttattagaagccttnaagagctttc 381 |||||||| ||||||||||| | ||||||||| |||| ||||||| |||||||||| Sbjct: 107377 gagtattttctctcagatgatgtcccagaactcattataagccttcaagagctttc 107322
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 266 bits (134), Expect = 5e-68 Identities = 300/356 (84%) Strand = Plus / Minus Query: 26 atggagaatctgtcgtcgcagccattaatcctgaagttgttgaaggaatcaacgaagggt 85 |||||||||||||| || |||||||||||||||||| |||||||||||||||| ||| Sbjct: 24110698 atggagaatctgtcatcacagccattaatcctgaagctgttgaaggaatcaactgcaggt 24110639 Query: 86 tgtttgatcagttctaatcaagtgtcgaagggtttttctcgggctgctgagagtgttgat 145 || ||||||||||||||||| |||| |||||||||| |||| || |||||| ||||| Sbjct: 24110638 tgcctgatcagttctaatcaaatgtctaagggtttttgtcggctagcagagagtattgat 24110579 Query: 146 gacctgagccttgatgttccttcagccaaaacgctttttgacaagctgctttcagcagcc 205 || |||||||||||| ||||||| ||||| | || |||||||||||| || | || Sbjct: 24110578 gatctgagccttgatattccttctgccaagattctctttgacaagctggttctgactgct 24110519 Query: 206 atatctgaagggtggcttgatgcttcattctgtaaatctgctgcacctgatgaagatgtg 265 | ||||||||| |||||||||||||||||| || |||| |||| ||| |||||||| || Sbjct: 24110518 acatctgaaggatggcttgatgcttcattcactacatcttctgcccctaatgaagatatg 24110459 Query: 266 tggaatgcaagcagtgaaaaggtcaagcgttttaaagaagaatctggtcacataattcag 325 | |||||||| |||||||| |||||| ||| |||||||||||||| |||||||| || Sbjct: 24110458 cgaaatgcaagtggtgaaaagatcaagcatttcaaagaagaatctggacacataatccaa 24110399 Query: 326 gagtatttcctctcagatgacgncccagaacttattagaagccttnaagagctttc 381 |||||||| ||||||||||| | ||||||||| |||| ||||||| |||||||||| Sbjct: 24110398 gagtattttctctcagatgatgtcccagaactcattataagccttcaagagctttc 24110343
>dbj|AK068497.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013155G23, full insert sequence Length = 2486 Score = 266 bits (134), Expect = 5e-68 Identities = 300/356 (84%) Strand = Plus / Plus Query: 26 atggagaatctgtcgtcgcagccattaatcctgaagttgttgaaggaatcaacgaagggt 85 |||||||||||||| || |||||||||||||||||| |||||||||||||||| ||| Sbjct: 1030 atggagaatctgtcatcacagccattaatcctgaagctgttgaaggaatcaactgcaggt 1089 Query: 86 tgtttgatcagttctaatcaagtgtcgaagggtttttctcgggctgctgagagtgttgat 145 || ||||||||||||||||| |||| |||||||||| |||| || |||||| ||||| Sbjct: 1090 tgcctgatcagttctaatcaaatgtctaagggtttttgtcggctagcagagagtattgat 1149 Query: 146 gacctgagccttgatgttccttcagccaaaacgctttttgacaagctgctttcagcagcc 205 || |||||||||||| ||||||| ||||| | || |||||||||||| || | || Sbjct: 1150 gatctgagccttgatattccttctgccaagattctctttgacaagctggttctgactgct 1209 Query: 206 atatctgaagggtggcttgatgcttcattctgtaaatctgctgcacctgatgaagatgtg 265 | ||||||||| |||||||||||||||||| || |||| |||| ||| |||||||| || Sbjct: 1210 acatctgaaggatggcttgatgcttcattcactacatcttctgcccctaatgaagatatg 1269 Query: 266 tggaatgcaagcagtgaaaaggtcaagcgttttaaagaagaatctggtcacataattcag 325 | |||||||| |||||||| |||||| ||| |||||||||||||| |||||||| || Sbjct: 1270 cgaaatgcaagtggtgaaaagatcaagcatttcaaagaagaatctggacacataatccaa 1329 Query: 326 gagtatttcctctcagatgacgncccagaacttattagaagccttnaagagctttc 381 |||||||| ||||||||||| | ||||||||| |||| ||||||| |||||||||| Sbjct: 1330 gagtattttctctcagatgatgccccagaactcattataagccttcaagagctttc 1385
>gb|AY104701.1| Zea mays PCO096148 mRNA sequence Length = 2251 Score = 218 bits (110), Expect = 1e-53 Identities = 312/380 (82%) Strand = Plus / Plus Query: 2 gtgaaacgtgctctcatccttggtatggagaatctgtcgtcgcagccattaatcctgaag 61 ||||| |||||||||| | ||||||| ||||| | || ||||| |||| |||||| ||| Sbjct: 836 gtgaagcgtgctctcacctttggtatagagaacatatcctcgcaaccatcaatccttaag 895 Query: 62 ttgttgaaggaatcaacgaagggttgtttgatcagttctaatcaagtgtcgaagggtttt 121 || |||||||| || | |||| ||||||||| |||||||| | || ||||||||| Sbjct: 896 ttattgaaggaggcagctgcaagttgcttgatcagtcctaatcaaatctcaaagggtttt 955 Query: 122 tctcgggctgctgagagtgttgatgacctgagccttgatgttccttcagccaaaacgctt 181 ||| | |||||| ||||||| ||| |||| |||||| ||||||| || ||| | ||| Sbjct: 956 tctagactagctgagggtgttgacgacttgagtcttgatattccttctgctaaagctctt 1015 Query: 182 tttgacaagctgctttcagcagccatatctgaagggtggcttgatgcttcattctgtaaa 241 |||||||||||| ||||| |||| ||||||||||| |||||||||||||| || ||||| Sbjct: 1016 tttgacaagctggtttcaacagctatatctgaaggatggcttgatgcttcttttggtaaa 1075 Query: 242 tctgctgcacctgatgaagatgtgtggaatgcaagcagtgaaaaggtcaagcgttttaaa 301 || ||||| ||||||||||| | | | ||||| || |||||| |||||||||||| Sbjct: 1076 tcagctgcccctgatgaagagatacaaagtacaagcgttgtaaaggtgaagcgttttaaa 1135 Query: 302 gaagaatctggtcacataattcaggagtatttcctctcagatgacgncccagaacttatt 361 ||||||| ||| ||||||||||| |||||||| ||||||||||| | ||||||||||||| Sbjct: 1136 gaagaatgtggccacataattcatgagtattttctctcagatgatgtcccagaacttatt 1195 Query: 362 agaagccttnaagagctttc 381 |||||||| |||||||||| Sbjct: 1196 cgaagccttgaagagctttc 1215
>gb|AY566523.1| Bathynomus giganteus isolate OC60 cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial Length = 619 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 85 ttgtttgatcagttctaatca 105 ||||||||||||||||||||| Sbjct: 151 ttgtttgatcagttctaatca 131
>ref|NM_125714.2| Arabidopsis thaliana unknown protein AT5G63190 transcript variant AT5G63190.2 mRNA, complete cds Length = 2558 Score = 40.1 bits (20), Expect = 5.1 Identities = 29/32 (90%) Strand = Plus / Plus Query: 315 acataattcaggagtatttcctctcagatgac 346 ||||||||||||| |||||| | ||||||||| Sbjct: 1496 acataattcaggaatatttcttatcagatgac 1527
>ref|NM_180924.1| Arabidopsis thaliana unknown protein AT5G63190 transcript variant AT5G63190.1 mRNA, complete cds Length = 2602 Score = 40.1 bits (20), Expect = 5.1 Identities = 29/32 (90%) Strand = Plus / Plus Query: 315 acataattcaggagtatttcctctcagatgac 346 ||||||||||||| |||||| | ||||||||| Sbjct: 1540 acataattcaggaatatttcttatcagatgac 1571
>gb|AE009952.1| Yersinia pestis KIM, complete genome Length = 4600755 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 139 tgttgatgacctgagccttgatgt 162 ||||||||||||||||| |||||| Sbjct: 1884158 tgttgatgacctgagccgtgatgt 1884181
>gb|AC125398.4| Mus musculus BAC clone RP24-217G23 from chromosome 18, complete sequence Length = 166948 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 252 ctgatgaagatgtgtggaat 271 |||||||||||||||||||| Sbjct: 68131 ctgatgaagatgtgtggaat 68112
>emb|BX322575.19| Zebrafish DNA sequence from clone CH211-283E2 in linkage group 9, complete sequence Length = 149874 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 tttttctcgggctgctgaga 137 |||||||||||||||||||| Sbjct: 114758 tttttctcgggctgctgaga 114739
>emb|AL118513.17|HSDJ685L9 Human DNA sequence from clone RP4-685L9 on chromosome 20 Contains the gene for a novel protein (FLJ90166), the 5' end of a nove genel (LOC149773) and two CpG islands, complete sequence Length = 92835 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 119 ttttctcgggctgctgagag 138 |||||||||||||||||||| Sbjct: 22892 ttttctcgggctgctgagag 22911
>gb|AY142667.1| Arabidopsis thaliana putative topoisomerase (At5g63190) mRNA, complete cds Length = 2140 Score = 40.1 bits (20), Expect = 5.1 Identities = 29/32 (90%) Strand = Plus / Plus Query: 315 acataattcaggagtatttcctctcagatgac 346 ||||||||||||| |||||| | ||||||||| Sbjct: 1280 acataattcaggaatatttcttatcagatgac 1311
>gb|AY039947.1| Arabidopsis thaliana putative topoisomerase (At5g63190) mRNA, complete cds Length = 2493 Score = 40.1 bits (20), Expect = 5.1 Identities = 29/32 (90%) Strand = Plus / Plus Query: 315 acataattcaggagtatttcctctcagatgac 346 ||||||||||||| |||||| | ||||||||| Sbjct: 1533 acataattcaggaatatttcttatcagatgac 1564
>emb|BX936398.1| Yersinia pseudotuberculosis IP32953 genome, complete sequence Length = 4744671 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 139 tgttgatgacctgagccttgatgt 162 ||||||||||||||||| |||||| Sbjct: 2984532 tgttgatgacctgagccgtgatgt 2984509 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 139 tgttgatgacctgagccttgatgt 162 ||||||||||||||||| |||||| Sbjct: 2980975 tgttgatgacctgagccgtgatgt 2980952
>emb|AJ414152.1| Yersinia pestis strain CO92 complete genome; segment 12/20 Length = 313050 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 139 tgttgatgacctgagccttgatgt 162 ||||||||||||||||| |||||| Sbjct: 187943 tgttgatgacctgagccgtgatgt 187920
>gb|AY085894.1| Arabidopsis thaliana clone 19433 mRNA, complete sequence Length = 2551 Score = 40.1 bits (20), Expect = 5.1 Identities = 29/32 (90%) Strand = Plus / Plus Query: 315 acataattcaggagtatttcctctcagatgac 346 ||||||||||||| |||||| | ||||||||| Sbjct: 1541 acataattcaggaatatttcttatcagatgac 1572
>gb|BC041474.1| Homo sapiens, clone IMAGE:5241870, mRNA Length = 2301 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 230 tcattctgtaaatctgctgcacct 253 ||||||||||| |||||||||||| Sbjct: 1822 tcattctgtaactctgctgcacct 1845
>gb|AC124804.10| Homo sapiens chromosome 17, clone RP11-449L23, complete sequence Length = 203066 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 230 tcattctgtaaatctgctgcacct 253 ||||||||||| |||||||||||| Sbjct: 81970 tcattctgtaactctgctgcacct 81947
>gb|AC134857.7| Mus musculus BAC clone RP23-336M11 from chromosome unknown, complete sequence Length = 200440 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 158 gatgttccttcagccaaaacgctt 181 ||||||||||||| |||||||||| Sbjct: 76215 gatgttccttcaggcaaaacgctt 76238
>dbj|AB008265.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MDC12 Length = 81662 Score = 40.1 bits (20), Expect = 5.1 Identities = 29/32 (90%) Strand = Plus / Plus Query: 315 acataattcaggagtatttcctctcagatgac 346 ||||||||||||| |||||| | ||||||||| Sbjct: 56369 acataattcaggaatatttcttatcagatgac 56400
>ref|XM_311624.2| Anopheles gambiae str. PEST ENSANGP00000000173 (ENSANGG00000000169), mRNA Length = 1103 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 258 aagatgtgtggaatgcaagcagtg 281 |||||||||||||||||| ||||| Sbjct: 362 aagatgtgtggaatgcaaacagtg 385
>ref|XM_311623.2| Anopheles gambiae str. PEST ENSANGP00000025307 (ENSANGG00000000169), mRNA Length = 1363 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 258 aagatgtgtggaatgcaagcagtg 281 |||||||||||||||||| ||||| Sbjct: 428 aagatgtgtggaatgcaaacagtg 451
>emb|BX001018.11| Zebrafish DNA sequence from clone DKEY-11D22, complete sequence Length = 206937 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 tttttctcgggctgctgaga 137 |||||||||||||||||||| Sbjct: 117922 tttttctcgggctgctgaga 117941
>gb|AF080563.1|AF080563 Anopheles gambiae Ultrabithorax homeotic protein IVa (Ubx) mRNA, complete cds Length = 1103 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 258 aagatgtgtggaatgcaagcagtg 281 |||||||||||||||||| ||||| Sbjct: 362 aagatgtgtggaatgcaaacagtg 385
>gb|AF080562.1|AF080562 Anopheles gambiae Ultrabithorax homeotic protein IIa (Ubx) mRNA, complete cds Length = 1363 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 258 aagatgtgtggaatgcaagcagtg 281 |||||||||||||||||| ||||| Sbjct: 428 aagatgtgtggaatgcaaacagtg 451
>emb|AL807238.5| Mouse DNA sequence from clone RP23-476F6 on chromosome 4, complete sequence Length = 169745 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 221 cttgatgcttcattctgtaa 240 |||||||||||||||||||| Sbjct: 111853 cttgatgcttcattctgtaa 111872 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,345,350 Number of Sequences: 3902068 Number of extensions: 3345350 Number of successful extensions: 68930 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 28 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 68817 Number of HSP's gapped (non-prelim): 107 length of query: 381 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 359 effective length of database: 17,147,199,772 effective search space: 6155844718148 effective search space used: 6155844718148 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
