ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal15a15 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY476807.1| Oryza sativa extracellular calcium sensing receptor (CaS) mRNA, complete cds Length = 1196 Score = 311 bits (157), Expect = 9e-82 Identities = 297/344 (86%) Strand = Plus / Plus Query: 57 cggactatgtcgtggccgccggagccgcgttcctcgcgtacctgctccttccgccggcct 116 ||||||| ||||||| ||||||||| ||||||||||||||||||||||| |||||||| | Sbjct: 549 cggactacgtcgtggtcgccggagcggcgttcctcgcgtacctgctcctgccgccggcat 608 Query: 117 ggtccctgctctcatacggcctacgcggctacaaaggtgacctgaacccagctcaagctc 176 |||||||||| || | | || |||||||||||||||||||||| | | || ||||||| Sbjct: 609 ggtccctgctttctttcactctccgcggctacaaaggtgacctgaccgctgcacaagctc 668 Query: 177 tggacatggtcacctctcaaggttaccttatcatcgacgtgcgaagcgagaacgacaagg 236 |||||||||| ||||| |||| |||| | | ||||| ||| | | |||||| ||||||| Sbjct: 669 tggacatggtgacctcgcaagattacgtgctgatcgatgtgaggaccgagaaggacaagg 728 Query: 237 gcaaagccggcgtgccgcagctcccctccaacgcaaagaacaagatcatctctctgccac 296 |||| |||||||||| ||||||||||| ||||| ||||||||| |||||||| | || | Sbjct: 729 ccaaaaccggcgtgccacagctcccctcgaacgcgaagaacaagctcatctctatcccgc 788 Query: 297 tggaagaacttccgaacaagataaagggcatggtgcgcaacgcgaagcgagcagaggcgg 356 ||||||| ||||| | |||||| ||| ||||||||||||||||||| | ||| ||||||| Sbjct: 789 tggaagagcttccaagcaagatgaagagcatggtgcgcaacgcgaaacaagccgaggcgg 848 Query: 357 agatcgccgcgctgaagatctngtacctcaagaggatcggcaag 400 ||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 849 agatcgccgcgctgaagatctcctacctcaagaggatcggcaag 892
>ref|XM_467599.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1164 Score = 303 bits (153), Expect = 2e-79 Identities = 296/344 (86%) Strand = Plus / Plus Query: 57 cggactatgtcgtggccgccggagccgcgttcctcgcgtacctgctccttccgccggcct 116 ||||||| ||||||| ||||||||| ||||||||||||||||||||||| |||||||| | Sbjct: 530 cggactacgtcgtggtcgccggagcggcgttcctcgcgtacctgctcctgccgccggcat 589 Query: 117 ggtccctgctctcatacggcctacgcggctacaaaggtgacctgaacccagctcaagctc 176 |||||||||| || | | || |||||||||||||||||||||| | | || ||||||| Sbjct: 590 ggtccctgctttctttcactctccgcggctacaaaggtgacctgaccgctgcacaagctc 649 Query: 177 tggacatggtcacctctcaaggttaccttatcatcgacgtgcgaagcgagaacgacaagg 236 |||||||||| ||||| |||| |||| | | ||||| ||| | | |||||| ||||||| Sbjct: 650 tggacatggtgacctcgcaagattacgtgctgatcgatgtgaggaccgagaaggacaagg 709 Query: 237 gcaaagccggcgtgccgcagctcccctccaacgcaaagaacaagatcatctctctgccac 296 |||| |||||||||| ||||||||||| ||||| ||||||||| |||||||| | || | Sbjct: 710 ccaaaaccggcgtgccacagctcccctcgaacgcgaagaacaagctcatctctatcccgc 769 Query: 297 tggaagaacttccgaacaagataaagggcatggtgcgcaacgcgaagcgagcagaggcgg 356 ||||||| ||||| | ||||| ||| ||||||||||||||||||| | ||| ||||||| Sbjct: 770 tggaagagcttccaagcaagacgaagagcatggtgcgcaacgcgaaacaagccgaggcgg 829 Query: 357 agatcgccgcgctgaagatctngtacctcaagaggatcggcaag 400 ||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 830 agatcgccgcgctgaagatctcctacctcaagaggatcggcaag 873
>dbj|AK058726.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-019-F04, full insert sequence Length = 1153 Score = 303 bits (153), Expect = 2e-79 Identities = 296/344 (86%) Strand = Plus / Plus Query: 57 cggactatgtcgtggccgccggagccgcgttcctcgcgtacctgctccttccgccggcct 116 ||||||| ||||||| ||||||||| ||||||||||||||||||||||| |||||||| | Sbjct: 362 cggactacgtcgtggtcgccggagcggcgttcctcgcgtacctgctcctgccgccggcat 421 Query: 117 ggtccctgctctcatacggcctacgcggctacaaaggtgacctgaacccagctcaagctc 176 |||||||||| || | | || |||||||||||||||||||||| | | || ||||||| Sbjct: 422 ggtccctgctttctttcactctccgcggctacaaaggtgacctgaccgctgcacaagctc 481 Query: 177 tggacatggtcacctctcaaggttaccttatcatcgacgtgcgaagcgagaacgacaagg 236 |||||||||| ||||| |||| |||| | | ||||| ||| | | |||||| ||||||| Sbjct: 482 tggacatggtgacctcgcaagattacgtgctgatcgatgtgaggaccgagaaggacaagg 541 Query: 237 gcaaagccggcgtgccgcagctcccctccaacgcaaagaacaagatcatctctctgccac 296 |||| |||||||||| ||||||||||| ||||| ||||||||| |||||||| | || | Sbjct: 542 ccaaaaccggcgtgccacagctcccctcgaacgcgaagaacaagctcatctctatcccgc 601 Query: 297 tggaagaacttccgaacaagataaagggcatggtgcgcaacgcgaagcgagcagaggcgg 356 ||||||| ||||| | ||||| ||| ||||||||||||||||||| | ||| ||||||| Sbjct: 602 tggaagagcttccaagcaagacgaagagcatggtgcgcaacgcgaaacaagccgaggcgg 661 Query: 357 agatcgccgcgctgaagatctngtacctcaagaggatcggcaag 400 ||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 662 agatcgccgcgctgaagatctcctacctcaagaggatcggcaag 705
>gb|AY105162.1| Zea mays PCO100489 mRNA sequence Length = 737 Score = 153 bits (77), Expect = 5e-34 Identities = 160/188 (85%) Strand = Plus / Minus Query: 209 atcgacgtgcgaagcgagaacgacaagggcaaagccggcgtgccgcagctcccctccaac 268 ||||||||||| ||||| || ||||||| ||| || || |||||||||| || || ||| Sbjct: 720 atcgacgtgcggagcgacaaggacaaggccaaggcaggattgccgcagctgccatcgaac 661 Query: 269 gcaaagaacaagatcatctctctgccactggaagaacttccgaacaagataaagggcatg 328 || ||||||||| || ||||| |||| |||||||| ||||||| |||| | ||||||||| Sbjct: 660 gcgaagaacaagctcgtctctgtgccgctggaagaccttccgagcaagctgaagggcatg 601 Query: 329 gtgcgcaacgcgaagcgagcagaggcggagatcgccgcgctgaagatctngtacctcaag 388 ||||||||||||||| ||| ||||||||||||||||| |||||||| | ||||||||| Sbjct: 600 gtgcgcaacgcgaagaaagccgaggcggagatcgccgctctgaagatatcctacctcaag 541 Query: 389 aggatcgg 396 | |||||| Sbjct: 540 aagatcgg 533
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 123 bits (62), Expect = 5e-25 Identities = 94/105 (89%) Strand = Plus / Minus Query: 296 ctggaagaacttccgaacaagataaagggcatggtgcgcaacgcgaagcgagcagaggcg 355 |||||||| ||||| | ||||| ||| ||||||||||||||||||| | ||| |||||| Sbjct: 30381044 ctggaagagcttccaagcaagacgaagagcatggtgcgcaacgcgaaacaagccgaggcg 30380985 Query: 356 gagatcgccgcgctgaagatctngtacctcaagaggatcggcaag 400 |||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 30380984 gagatcgccgcgctgaagatctcctacctcaagaggatcggcaag 30380940 Score = 103 bits (52), Expect = 4e-19 Identities = 118/140 (84%) Strand = Plus / Minus Query: 150 aaggtgacctgaacccagctcaagctctggacatggtcacctctcaaggttaccttatca 209 |||||||||||| | | || ||||||||||||||||| ||||| |||| |||| | | | Sbjct: 30381282 aaggtgacctgaccgctgcacaagctctggacatggtgacctcgcaagattacgtgctga 30381223 Query: 210 tcgacgtgcgaagcgagaacgacaagggcaaagccggcgtgccgcagctcccctccaacg 269 |||| ||| | | |||||| ||||||| |||| |||||||||| ||||||||||| |||| Sbjct: 30381222 tcgatgtgaggaccgagaaggacaaggccaaaaccggcgtgccacagctcccctcgaacg 30381163 Query: 270 caaagaacaagatcatctct 289 | ||||||||| |||||||| Sbjct: 30381162 cgaagaacaagctcatctct 30381143 Score = 99.6 bits (50), Expect = 7e-18 Identities = 86/98 (87%) Strand = Plus / Minus Query: 57 cggactatgtcgtggccgccggagccgcgttcctcgcgtacctgctccttccgccggcct 116 ||||||| ||||||| ||||||||| ||||||||||||||||||||||| |||||||| | Sbjct: 30381472 cggactacgtcgtggtcgccggagcggcgttcctcgcgtacctgctcctgccgccggcat 30381413 Query: 117 ggtccctgctctcatacggcctacgcggctacaaaggt 154 |||||||||| || | | || ||||||||||||||| Sbjct: 30381412 ggtccctgctttctttcactctccgcggctacaaaggt 30381375
>dbj|AP005751.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0072H09 Length = 160541 Score = 123 bits (62), Expect = 5e-25 Identities = 94/105 (89%) Strand = Plus / Minus Query: 296 ctggaagaacttccgaacaagataaagggcatggtgcgcaacgcgaagcgagcagaggcg 355 |||||||| ||||| | ||||| ||| ||||||||||||||||||| | ||| |||||| Sbjct: 61904 ctggaagagcttccaagcaagacgaagagcatggtgcgcaacgcgaaacaagccgaggcg 61845 Query: 356 gagatcgccgcgctgaagatctngtacctcaagaggatcggcaag 400 |||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 61844 gagatcgccgcgctgaagatctcctacctcaagaggatcggcaag 61800 Score = 103 bits (52), Expect = 4e-19 Identities = 118/140 (84%) Strand = Plus / Minus Query: 150 aaggtgacctgaacccagctcaagctctggacatggtcacctctcaaggttaccttatca 209 |||||||||||| | | || ||||||||||||||||| ||||| |||| |||| | | | Sbjct: 62142 aaggtgacctgaccgctgcacaagctctggacatggtgacctcgcaagattacgtgctga 62083 Query: 210 tcgacgtgcgaagcgagaacgacaagggcaaagccggcgtgccgcagctcccctccaacg 269 |||| ||| | | |||||| ||||||| |||| |||||||||| ||||||||||| |||| Sbjct: 62082 tcgatgtgaggaccgagaaggacaaggccaaaaccggcgtgccacagctcccctcgaacg 62023 Query: 270 caaagaacaagatcatctct 289 | ||||||||| |||||||| Sbjct: 62022 cgaagaacaagctcatctct 62003 Score = 99.6 bits (50), Expect = 7e-18 Identities = 86/98 (87%) Strand = Plus / Minus Query: 57 cggactatgtcgtggccgccggagccgcgttcctcgcgtacctgctccttccgccggcct 116 ||||||| ||||||| ||||||||| ||||||||||||||||||||||| |||||||| | Sbjct: 62332 cggactacgtcgtggtcgccggagcggcgttcctcgcgtacctgctcctgccgccggcat 62273 Query: 117 ggtccctgctctcatacggcctacgcggctacaaaggt 154 |||||||||| || | | || ||||||||||||||| Sbjct: 62272 ggtccctgctttctttcactctccgcggctacaaaggt 62235
>gb|AC112183.3| Homo sapiens chromosome 5 clone RP11-152F4, complete sequence Length = 163612 Score = 44.1 bits (22), Expect = 0.34 Identities = 25/26 (96%) Strand = Plus / Plus Query: 42 ggtctctggaaggcacggactatgtc 67 ||||||||||||||| |||||||||| Sbjct: 25493 ggtctctggaaggcagggactatgtc 25518
>gb|AC008897.7|AC008897 Homo sapiens chromosome 5 clone CTD-2235C13, complete sequence Length = 117026 Score = 44.1 bits (22), Expect = 0.34 Identities = 25/26 (96%) Strand = Plus / Minus Query: 42 ggtctctggaaggcacggactatgtc 67 ||||||||||||||| |||||||||| Sbjct: 36316 ggtctctggaaggcagggactatgtc 36291
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 351 aggcggagatcgccgcgctga 371 ||||||||||||||||||||| Sbjct: 805176 aggcggagatcgccgcgctga 805196
>ref|XM_687214.1| PREDICTED: Danio rerio similar to heparan N-sulfatase (LOC563849), mRNA Length = 1080 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 296 ctggaagaacttccgaacaag 316 ||||||||||||||||||||| Sbjct: 141 ctggaagaacttccgaacaag 121
>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome Length = 3147090 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 57 cggactatgtcgtggccgccg 77 ||||||||||||||||||||| Sbjct: 1189966 cggactatgtcgtggccgccg 1189946
>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence Length = 3363523 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 350 gaggcggagatcgccgcgct 369 |||||||||||||||||||| Sbjct: 2356229 gaggcggagatcgccgcgct 2356248
>ref|XM_967725.1| PREDICTED: Tribolium castaneum similar to sirtuin 5 (silent mating type information regulation 2 homolog) 5 (LOC661574), mRNA Length = 765 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 293 ccactggaagaacttccgaa 312 |||||||||||||||||||| Sbjct: 508 ccactggaagaacttccgaa 527
>gb|DQ397863.1| Cenarchaeum symbiosum clone C20A12, complete sequence Length = 41539 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 64 tgtcgtggccgccggagccg 83 |||||||||||||||||||| Sbjct: 38247 tgtcgtggccgccggagccg 38266
>gb|AF355575.1| Azospirillum brasilense strain Sp7 beta-hydroxybutyrate dehydrogenase (hbdH) gene, complete cds Length = 786 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 352 ggcggagatcgccgcgctga 371 |||||||||||||||||||| Sbjct: 204 ggcggagatcgccgcgctga 223
>gb|AC104161.2| Homo sapiens chromosome 3 clone RP11-32J15, complete sequence Length = 166659 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 286 ctctctgccactggaagaac 305 |||||||||||||||||||| Sbjct: 139319 ctctctgccactggaagaac 139300
>gb|AC092039.2| Homo sapiens chromosome 3 clone RP11-114P15, complete sequence Length = 166560 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 286 ctctctgccactggaagaac 305 |||||||||||||||||||| Sbjct: 8745 ctctctgccactggaagaac 8726
>gb|AY967769.1| Wolbachia endosymbiont of Porcellio dilatatus petiti VirD4 (virD4) gene, partial cds Length = 356 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 222 gcgagaacgacaagggcaaa 241 |||||||||||||||||||| Sbjct: 229 gcgagaacgacaagggcaaa 248
>gb|AY967768.1| Wolbachia endosymbiont of Oniscus asellus VirD4 (virD4) gene, partial cds Length = 321 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 222 gcgagaacgacaagggcaaa 241 |||||||||||||||||||| Sbjct: 194 gcgagaacgacaagggcaaa 213
>gb|AY967767.1| Wolbachia endosymbiont of Armadillidium vulgare phosphatase gene, partial cds; GTP cyclohydrolase II (ribA), VirB8 (virB8), VirB9 (virB9), VirB10 (virB10), and VirB11 (virB11) genes, complete cds; and VirD4 (virD4) gene, partial cds Length = 6860 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 222 gcgagaacgacaagggcaaa 241 |||||||||||||||||||| Sbjct: 6706 gcgagaacgacaagggcaaa 6725
>gb|AC154464.2| Mus musculus BAC clone RP24-146B1 from 16, complete sequence Length = 143858 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 280 gatcatctctctgccactgg 299 |||||||||||||||||||| Sbjct: 117100 gatcatctctctgccactgg 117119
>gb|AE017321.1| Wolbachia endosymbiont strain TRS of Brugia malayi, complete genome Length = 1080084 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 222 gcgagaacgacaagggcaaa 241 |||||||||||||||||||| Sbjct: 369894 gcgagaacgacaagggcaaa 369913 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,405,762 Number of Sequences: 3902068 Number of extensions: 2405762 Number of successful extensions: 43178 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 22 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 42989 Number of HSP's gapped (non-prelim): 181 length of query: 400 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 378 effective length of database: 17,147,199,772 effective search space: 6481641513816 effective search space used: 6481641513816 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
