| Clone Name | baal15a14 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 174 bits (88), Expect = 2e-40 Identities = 109/116 (93%) Strand = Plus / Plus Query: 308 tactatattaattacaaaatgatgaagaaaaaggtaaaacagtatgttcagcagactcaa 367 ||||| || ||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 27717516 tactacatcaattacaaaatgatgaagaaaaaggtaaaacagtatgttcagcagacgcag 27717575 Query: 368 agtggtggaagaaatcatgaacaggttcttaaagagttctcgaggatgcttgatga 423 | |||||||||||||| |||||||||||||||||||||||| |||||||||||||| Sbjct: 27717576 aatggtggaagaaatcgtgaacaggttcttaaagagttctcaaggatgcttgatga 27717631 Score = 91.7 bits (46), Expect = 2e-15 Identities = 73/82 (89%) Strand = Plus / Plus Query: 426 agattgaaaaggttgtgctctttctactgaaacagcaaggtcatcttgctagcaggatcg 485 ||||||| ||| ||||||||||||| ||| |||| ||||| |||||||||||||| |||| Sbjct: 27717744 agattgagaagattgtgctctttcttctgcaacaacaaggccatcttgctagcagaatcg 27717803 Query: 486 agaaattgggacaacagcgtgc 507 ||||||||||| || ||||||| Sbjct: 27717804 agaaattgggagaagagcgtgc 27717825 Score = 77.8 bits (39), Expect = 4e-11 Identities = 57/63 (90%) Strand = Plus / Plus Query: 244 aaacgccaagatggttaattttgggaaggtactggtgtcggatcaattggaggagtggaa 303 ||||||||||||||||||||| |||||| |||| || |||| ||||||||||||||||| Sbjct: 27717087 aaacgccaagatggttaatttcgggaagagactgatggcggaccaattggaggagtggaa 27717146 Query: 304 aga 306 ||| Sbjct: 27717147 aga 27717149
>dbj|AP005823.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0663F07 Length = 159046 Score = 174 bits (88), Expect = 2e-40 Identities = 109/116 (93%) Strand = Plus / Plus Query: 308 tactatattaattacaaaatgatgaagaaaaaggtaaaacagtatgttcagcagactcaa 367 ||||| || ||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 2849 tactacatcaattacaaaatgatgaagaaaaaggtaaaacagtatgttcagcagacgcag 2908 Query: 368 agtggtggaagaaatcatgaacaggttcttaaagagttctcgaggatgcttgatga 423 | |||||||||||||| |||||||||||||||||||||||| |||||||||||||| Sbjct: 2909 aatggtggaagaaatcgtgaacaggttcttaaagagttctcaaggatgcttgatga 2964 Score = 91.7 bits (46), Expect = 2e-15 Identities = 73/82 (89%) Strand = Plus / Plus Query: 426 agattgaaaaggttgtgctctttctactgaaacagcaaggtcatcttgctagcaggatcg 485 ||||||| ||| ||||||||||||| ||| |||| ||||| |||||||||||||| |||| Sbjct: 3077 agattgagaagattgtgctctttcttctgcaacaacaaggccatcttgctagcagaatcg 3136 Query: 486 agaaattgggacaacagcgtgc 507 ||||||||||| || ||||||| Sbjct: 3137 agaaattgggagaagagcgtgc 3158 Score = 77.8 bits (39), Expect = 4e-11 Identities = 57/63 (90%) Strand = Plus / Plus Query: 244 aaacgccaagatggttaattttgggaaggtactggtgtcggatcaattggaggagtggaa 303 ||||||||||||||||||||| |||||| |||| || |||| ||||||||||||||||| Sbjct: 2420 aaacgccaagatggttaatttcgggaagagactgatggcggaccaattggaggagtggaa 2479 Query: 304 aga 306 ||| Sbjct: 2480 aga 2482
>dbj|AP005775.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0005A04 Length = 140723 Score = 174 bits (88), Expect = 2e-40 Identities = 109/116 (93%) Strand = Plus / Plus Query: 308 tactatattaattacaaaatgatgaagaaaaaggtaaaacagtatgttcagcagactcaa 367 ||||| || ||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 103382 tactacatcaattacaaaatgatgaagaaaaaggtaaaacagtatgttcagcagacgcag 103441 Query: 368 agtggtggaagaaatcatgaacaggttcttaaagagttctcgaggatgcttgatga 423 | |||||||||||||| |||||||||||||||||||||||| |||||||||||||| Sbjct: 103442 aatggtggaagaaatcgtgaacaggttcttaaagagttctcaaggatgcttgatga 103497 Score = 91.7 bits (46), Expect = 2e-15 Identities = 73/82 (89%) Strand = Plus / Plus Query: 426 agattgaaaaggttgtgctctttctactgaaacagcaaggtcatcttgctagcaggatcg 485 ||||||| ||| ||||||||||||| ||| |||| ||||| |||||||||||||| |||| Sbjct: 103610 agattgagaagattgtgctctttcttctgcaacaacaaggccatcttgctagcagaatcg 103669 Query: 486 agaaattgggacaacagcgtgc 507 ||||||||||| || ||||||| Sbjct: 103670 agaaattgggagaagagcgtgc 103691 Score = 77.8 bits (39), Expect = 4e-11 Identities = 57/63 (90%) Strand = Plus / Plus Query: 244 aaacgccaagatggttaattttgggaaggtactggtgtcggatcaattggaggagtggaa 303 ||||||||||||||||||||| |||||| |||| || |||| ||||||||||||||||| Sbjct: 102953 aaacgccaagatggttaatttcgggaagagactgatggcggaccaattggaggagtggaa 103012 Query: 304 aga 306 ||| Sbjct: 103013 aga 103015
>ref|XM_473572.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2178 Score = 121 bits (61), Expect = 3e-24 Identities = 262/329 (79%) Strand = Plus / Plus Query: 245 aacgccaagatggttaattttgggaaggtactggtgtcggatcaattggaggagtggaaa 304 |||| |||||||||||||||||| ||| || || | |||||| | || || |||||| Sbjct: 79 aacgacaagatggttaattttggaaagaagttgatggctgatcaagtagaagaatggaaa 138 Query: 305 gaatactatattaattacaaaatgatgaagaaaaaggtaaaacagtatgttcagcagact 364 | |||||||||||| |||||| |||||||||||| | | || || || ||||||||||| Sbjct: 139 ggatactatattaactacaaattgatgaagaaaatgttgaagcaatacgttcagcagacc 198 Query: 365 caaagtggtggaagaaatcatgaacaggttcttaaagagttctcgaggatgcttgatgag 424 ||| |||||||| | ||| || || || |||||||||||||| || || |||||||| Sbjct: 199 caacttggtggaaaagatcgagagcaagtacttaaagagttctcaagaattcttgatgaa 258 Query: 425 cagattgaaaaggttgtgctctttctactgaaacagcaaggtcatcttgctagcaggatc 484 |||||||||| | |||| || ||||| || |||| ||||| || ||||||| ||||| Sbjct: 259 cagattgaaaggattgtactttttctgctacaacaacaaggccaccttgctaataggatt 318 Query: 485 gagaaattgggacaacagcgtgccatacttacagaacattgcgatatatcacaagtttct 544 ||| |||||||| |||||||||| ||| |||||| |||||||| ||||||| | Sbjct: 319 gaggaattgggagaacagcgtgctgctcttctagaacagcatgatatatcccaagttttt 378 Query: 545 caagtgcgagaggcttataggcaagttgg 573 ||| | |||||||||||||| ||||||| Sbjct: 379 caactacgagaggcttatagagaagttgg 407
>dbj|AK066068.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013056J05, full insert sequence Length = 2706 Score = 121 bits (61), Expect = 3e-24 Identities = 262/329 (79%) Strand = Plus / Plus Query: 245 aacgccaagatggttaattttgggaaggtactggtgtcggatcaattggaggagtggaaa 304 |||| |||||||||||||||||| ||| || || | |||||| | || || |||||| Sbjct: 460 aacgacaagatggttaattttggaaagaagttgatggctgatcaagtagaagaatggaaa 519 Query: 305 gaatactatattaattacaaaatgatgaagaaaaaggtaaaacagtatgttcagcagact 364 | |||||||||||| |||||| |||||||||||| | | || || || ||||||||||| Sbjct: 520 ggatactatattaactacaaattgatgaagaaaatgttgaagcaatacgttcagcagacc 579 Query: 365 caaagtggtggaagaaatcatgaacaggttcttaaagagttctcgaggatgcttgatgag 424 ||| |||||||| | ||| || || || |||||||||||||| || || |||||||| Sbjct: 580 caacttggtggaaaagatcgagagcaagtacttaaagagttctcaagaattcttgatgaa 639 Query: 425 cagattgaaaaggttgtgctctttctactgaaacagcaaggtcatcttgctagcaggatc 484 |||||||||| | |||| || ||||| || |||| ||||| || ||||||| ||||| Sbjct: 640 cagattgaaaggattgtactttttctgctacaacaacaaggccaccttgctaataggatt 699 Query: 485 gagaaattgggacaacagcgtgccatacttacagaacattgcgatatatcacaagtttct 544 ||| |||||||| |||||||||| ||| |||||| |||||||| ||||||| | Sbjct: 700 gaggaattgggagaacagcgtgctgctcttctagaacagcatgatatatcccaagttttt 759 Query: 545 caagtgcgagaggcttataggcaagttgg 573 ||| | |||||||||||||| ||||||| Sbjct: 760 caactacgagaggcttatagagaagttgg 788
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 65.9 bits (33), Expect = 1e-07 Identities = 96/117 (82%) Strand = Plus / Plus Query: 307 atactatattaattacaaaatgatgaagaaaaaggtaaaacagtatgttcagcagactca 366 |||||||||||| |||||| |||||||||||| | | || || || ||||||||||| || Sbjct: 28838551 atactatattaactacaaattgatgaagaaaatgttgaagcaatacgttcagcagaccca 28838610 Query: 367 aagtggtggaagaaatcatgaacaggttcttaaagagttctcgaggatgcttgatga 423 | |||||||| | ||| || || || |||||||||||||| || || |||||||| Sbjct: 28838611 acttggtggaaaagatcgagagcaagtacttaaagagttctcaagaattcttgatga 28838667 Score = 50.1 bits (25), Expect = 0.008 Identities = 118/149 (79%) Strand = Plus / Plus Query: 425 cagattgaaaaggttgtgctctttctactgaaacagcaaggtcatcttgctagcaggatc 484 |||||||||| | |||| || ||||| || |||| ||||| || ||||||| ||||| Sbjct: 28838829 cagattgaaaggattgtactttttctgctacaacaacaaggccaccttgctaataggatt 28838888 Query: 485 gagaaattgggacaacagcgtgccatacttacagaacattgcgatatatcacaagtttct 544 ||| |||||||| |||||||||| ||| |||||| |||||||| ||||||| | Sbjct: 28838889 gaggaattgggagaacagcgtgctgctcttctagaacagcatgatatatcccaagttttt 28838948 Query: 545 caagtgcgagaggcttataggcaagttgg 573 ||| | |||||||||||||| ||||||| Sbjct: 28838949 caactacgagaggcttatagagaagttgg 28838977
>emb|AL606640.4|OSJN00071 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0019K04, complete sequence Length = 154865 Score = 65.9 bits (33), Expect = 1e-07 Identities = 96/117 (82%) Strand = Plus / Plus Query: 307 atactatattaattacaaaatgatgaagaaaaaggtaaaacagtatgttcagcagactca 366 |||||||||||| |||||| |||||||||||| | | || || || ||||||||||| || Sbjct: 50613 atactatattaactacaaattgatgaagaaaatgttgaagcaatacgttcagcagaccca 50672 Query: 367 aagtggtggaagaaatcatgaacaggttcttaaagagttctcgaggatgcttgatga 423 | |||||||| | ||| || || || |||||||||||||| || || |||||||| Sbjct: 50673 acttggtggaaaagatcgagagcaagtacttaaagagttctcaagaattcttgatga 50729 Score = 50.1 bits (25), Expect = 0.008 Identities = 118/149 (79%) Strand = Plus / Plus Query: 425 cagattgaaaaggttgtgctctttctactgaaacagcaaggtcatcttgctagcaggatc 484 |||||||||| | |||| || ||||| || |||| ||||| || ||||||| ||||| Sbjct: 50891 cagattgaaaggattgtactttttctgctacaacaacaaggccaccttgctaataggatt 50950 Query: 485 gagaaattgggacaacagcgtgccatacttacagaacattgcgatatatcacaagtttct 544 ||| |||||||| |||||||||| ||| |||||| |||||||| ||||||| | Sbjct: 50951 gaggaattgggagaacagcgtgctgctcttctagaacagcatgatatatcccaagttttt 51010 Query: 545 caagtgcgagaggcttataggcaagttgg 573 ||| | |||||||||||||| ||||||| Sbjct: 51011 caactacgagaggcttatagagaagttgg 51039
>ref|NM_185492.1| Oryza sativa (japonica cultivar-group), Ozsa8589 predicted mRNA Length = 1761 Score = 56.0 bits (28), Expect = 1e-04 Identities = 52/60 (86%) Strand = Plus / Plus Query: 391 ggttcttaaagagttctcgaggatgcttgatgagcagattgaaaaggttgtgctctttct 450 ||||||||| || ||||||| |||||||||||| |||||||| ||| |||| || ||||| Sbjct: 138 ggttcttaaggatttctcgaagatgcttgatgatcagattgagaagattgtcctatttct 197
>ref|NM_118428.2| Arabidopsis thaliana unknown protein AT4G22990 mRNA, complete cds Length = 2429 Score = 44.1 bits (22), Expect = 0.51 Identities = 28/30 (93%) Strand = Plus / Plus Query: 392 gttcttaaagagttctcgaggatgcttgat 421 ||||||||||| ||||| |||||||||||| Sbjct: 416 gttcttaaagatttctcaaggatgcttgat 445
>ref|XM_667547.1| Plasmodium berghei strain ANKA hypothetical protein (PB000687.00.0) partial mRNA Length = 639 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Plus Query: 320 tacaaaatgatgaagaaaaagg 341 |||||||||||||||||||||| Sbjct: 50 tacaaaatgatgaagaaaaagg 71
>emb|AL161558.2|ATCHRIV58 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 58 Length = 193550 Score = 44.1 bits (22), Expect = 0.51 Identities = 28/30 (93%) Strand = Plus / Minus Query: 392 gttcttaaagagttctcgaggatgcttgat 421 ||||||||||| ||||| |||||||||||| Sbjct: 92905 gttcttaaagatttctcaaggatgcttgat 92876
>emb|AL031018.1|ATF7H19 Arabidopsis thaliana DNA chromosome 4, BAC clone F7H19 (ESSA project) Length = 139316 Score = 44.1 bits (22), Expect = 0.51 Identities = 28/30 (93%) Strand = Plus / Minus Query: 392 gttcttaaagagttctcgaggatgcttgat 421 ||||||||||| ||||| |||||||||||| Sbjct: 63818 gttcttaaagatttctcaaggatgcttgat 63789
>dbj|BA000023.2| Sulfolobus tokodaii str. 7 DNA, complete genome Length = 2694756 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Minus Query: 330 tgaagaaaaaggtaaaacagta 351 |||||||||||||||||||||| Sbjct: 2495136 tgaagaaaaaggtaaaacagta 2495115
>gb|AY056374.1| Arabidopsis thaliana AT4g22990/F7H19_170 mRNA, complete cds Length = 2428 Score = 44.1 bits (22), Expect = 0.51 Identities = 28/30 (93%) Strand = Plus / Plus Query: 392 gttcttaaagagttctcgaggatgcttgat 421 ||||||||||| ||||| |||||||||||| Sbjct: 415 gttcttaaagatttctcaaggatgcttgat 444
>emb|CR956623.8| Zebrafish DNA sequence from clone CH211-112D19 in linkage group 2, complete sequence Length = 93011 Score = 44.1 bits (22), Expect = 0.51 Identities = 34/38 (89%) Strand = Plus / Plus Query: 401 gagttctcgaggatgcttgatgagcagattgaaaaggt 438 ||||||| |||||||| |||||| ||||||||||||| Sbjct: 45919 gagttcttcaggatgctggatgagaagattgaaaaggt 45956
>gb|BC078652.1| Danio rerio zgc:55943, mRNA (cDNA clone MGC:86868 IMAGE:6903692), complete cds Length = 1670 Score = 42.1 bits (21), Expect = 2.0 Identities = 33/37 (89%) Strand = Plus / Plus Query: 401 gagttctcgaggatgcttgatgagcagattgaaaagg 437 ||||||| |||||||| |||||| |||||||||||| Sbjct: 401 gagttcttcaggatgctggatgagaagattgaaaagg 437
>ref|XM_458612.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0D04026g) partial mRNA Length = 1377 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 324 aaatgatgaagaaaaaggtaaaaca 348 |||| |||||||||||||||||||| Sbjct: 321 aaataatgaagaaaaaggtaaaaca 345
>gb|BC044550.1| Danio rerio zgc:55943, mRNA (cDNA clone MGC:55943 IMAGE:3819290), complete cds Length = 1594 Score = 42.1 bits (21), Expect = 2.0 Identities = 33/37 (89%) Strand = Plus / Plus Query: 401 gagttctcgaggatgcttgatgagcagattgaaaagg 437 ||||||| |||||||| |||||| |||||||||||| Sbjct: 363 gagttcttcaggatgctggatgagaagattgaaaagg 399
>gb|AC117200.3| Mus musculus BAC clone RP23-164N7 from 3, complete sequence Length = 220758 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 291 tggaggagtggaaagaatact 311 ||||||||||||||||||||| Sbjct: 20898 tggaggagtggaaagaatact 20918
>emb|AL512380.20| Human DNA sequence from clone RP11-204E9 on chromosome 6 Contains part of a novel gene, complete sequence Length = 150972 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 405 tctcgaggatgcttgatgagcagat 429 ||||||||| ||||||||||||||| Sbjct: 47960 tctcgaggaagcttgatgagcagat 47984
>emb|CR382136.1| Debaryomyces hansenii chromosome D of strain CBS767 of Debaryomyces hansenii Length = 1602771 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 324 aaatgatgaagaaaaaggtaaaaca 348 |||| |||||||||||||||||||| Sbjct: 287665 aaataatgaagaaaaaggtaaaaca 287689
>emb|AL591113.14| Mouse DNA sequence from clone RP23-253E9 on chromosome 11 Contains a phosphoglycerate mutase (Pgam) family pseudogene, a pseudogene similar to part of chondroitin sulfate proteoglycan 6 Cspg6, the gene for a novel protein similar to human DSCAM-interacting protein 1, a novel gene, the Crlf3 gene for cytokine receptor-like factor 3, the 5' end of a novel gene and a CpG island, complete sequence Length = 204106 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 325 aatgatgaagaaaaaggtaaa 345 ||||||||||||||||||||| Sbjct: 190903 aatgatgaagaaaaaggtaaa 190923
>ref|XM_697524.1| PREDICTED: Danio rerio hypothetical protein LOC554549 (LOC554549), mRNA Length = 1583 Score = 42.1 bits (21), Expect = 2.0 Identities = 33/37 (89%) Strand = Plus / Plus Query: 401 gagttctcgaggatgcttgatgagcagattgaaaagg 437 ||||||| |||||||| |||||| |||||||||||| Sbjct: 363 gagttcttcaggatgctggatgagaagattgaaaagg 399
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 2.0 Identities = 30/33 (90%) Strand = Plus / Plus Query: 391 ggttcttaaagagttctcgaggatgcttgatga 423 ||||||||| || ||||||| |||||||||||| Sbjct: 1555827 ggttcttaaggatttctcgaagatgcttgatga 1555859
>ref|NM_213064.1| Danio rerio zgc:55943 (zgc:55943), mRNA Length = 1594 Score = 42.1 bits (21), Expect = 2.0 Identities = 33/37 (89%) Strand = Plus / Plus Query: 401 gagttctcgaggatgcttgatgagcagattgaaaagg 437 ||||||| |||||||| |||||| |||||||||||| Sbjct: 363 gagttcttcaggatgctggatgagaagattgaaaagg 399
>gb|AC080014.13| Homo sapiens 3 BAC RP11-301G23 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 163111 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 332 aagaaaaaggtaaaacagtat 352 ||||||||||||||||||||| Sbjct: 105779 aagaaaaaggtaaaacagtat 105759
>dbj|AP000391.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0538C01 Length = 155643 Score = 42.1 bits (21), Expect = 2.0 Identities = 30/33 (90%) Strand = Plus / Plus Query: 391 ggttcttaaagagttctcgaggatgcttgatga 423 ||||||||| || ||||||| |||||||||||| Sbjct: 84551 ggttcttaaggatttctcgaagatgcttgatga 84583
>gb|AC140380.3| Mus musculus BAC clone RP23-175B15 from 3, complete sequence Length = 206396 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 291 tggaggagtggaaagaatact 311 ||||||||||||||||||||| Sbjct: 21945 tggaggagtggaaagaatact 21925
>ref|NM_112968.3| Arabidopsis thaliana EIN3 (ETHYLENE-INSENSITIVE3); transcription factor AT3G20770 (EIN3) mRNA, complete cds Length = 2413 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 323 aaaatgatgaagaaaaaggt 342 |||||||||||||||||||| Sbjct: 215 aaaatgatgaagaaaaaggt 196
>gb|AC024753.1| Caenorhabditis elegans cosmid Y23H5B, complete sequence Length = 69663 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 364 tcaaagtggtggaagaaatc 383 |||||||||||||||||||| Sbjct: 36969 tcaaagtggtggaagaaatc 36950
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 136 ggcgcgatcggttcgttgat 155 |||||||||||||||||||| Sbjct: 906769 ggcgcgatcggttcgttgat 906788
>gb|BT013504.1| Lycopersicon esculentum clone 132192F, mRNA sequence Length = 1056 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 416 cttgatgagcagattgaaaa 435 |||||||||||||||||||| Sbjct: 102 cttgatgagcagattgaaaa 83
>gb|AY257538.1| Pseudomonas aeruginosa strain C plasmid pKLC102, complete sequence Length = 103532 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 49 gcgccattaccattgcgccgcgct 72 |||||||||||||||||| ||||| Sbjct: 93109 gcgccattaccattgcgcggcgct 93086
>gb|AC122882.4| Mus musculus BAC clone RP23-80M17 from chromosome 7, complete sequence Length = 260989 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 163 taaattcaggagattgcttc 182 |||||||||||||||||||| Sbjct: 247893 taaattcaggagattgcttc 247912
>gb|AC147024.2| Pan troglodytes BAC clone RP43-89L5 from 7, complete sequence Length = 162174 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 377 agaaatcatgaacaggttct 396 |||||||||||||||||||| Sbjct: 153310 agaaatcatgaacaggttct 153329
>gb|AC138715.3| Mus musculus BAC clone RP23-283E23 from chromosome 15, complete sequence Length = 164806 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 ttgaaaaggttgtgctcttt 448 |||||||||||||||||||| Sbjct: 117505 ttgaaaaggttgtgctcttt 117486
>gb|AC121830.3| Mus musculus BAC clone RP24-63N24 from chromosome 7, complete sequence Length = 211478 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 163 taaattcaggagattgcttc 182 |||||||||||||||||||| Sbjct: 48400 taaattcaggagattgcttc 48419
>gb|AC005024.2| Homo sapiens BAC clone GS1-438P6 from 7, complete sequence Length = 89494 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 377 agaaatcatgaacaggttct 396 |||||||||||||||||||| Sbjct: 57127 agaaatcatgaacaggttct 57108
>gb|AY069875.2| Arabidopsis thaliana AT3g20770/MOE17_6 mRNA, complete cds Length = 2367 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 323 aaaatgatgaagaaaaaggt 342 |||||||||||||||||||| Sbjct: 216 aaaatgatgaagaaaaaggt 197
>emb|AL138919.12| Human DNA sequence from clone RP3-492L20 on chromosome 6, complete sequence Length = 72535 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 186 gaacaagggaagggaggagc 205 |||||||||||||||||||| Sbjct: 43958 gaacaagggaagggaggagc 43939
>emb|Z49309.1|SCYJL034W S.cerevisiae chromosome X reading frame ORF YJL034w Length = 2835 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 289 attggaggagtggaaagaat 308 |||||||||||||||||||| Sbjct: 436 attggaggagtggaaagaat 417
>emb|BX088700.1|CNS09S4S DNA centromeric region sequence from BAC DP26B06, DP34F04, DP16D11, DP09G08, DP35C12 of chromosome 5 of Podospora anserina Length = 322194 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 418 tgatgagcagattgaaaagg 437 |||||||||||||||||||| Sbjct: 113564 tgatgagcagattgaaaagg 113545
>gb|AF402316.1| Staphylococcus saprophyticus surface protein SdrI gene, complete cds Length = 5682 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 320 tacaaaatgatgaagaaaaaggta 343 ||||||||||||| |||||||||| Sbjct: 2315 tacaaaatgatgacgaaaaaggta 2338
>gb|AC092329.3| Homo sapiens chromosome 19 clone RP11-15H20, complete sequence Length = 186233 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 304 agaatactatattaattacaaaat 327 ||||||||| |||||||||||||| Sbjct: 104016 agaatactaaattaattacaaaat 104039
>gb|AC114303.2| Homo sapiens chromosome 5 clone RP11-157J11, complete sequence Length = 59920 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 343 aaaacagtatgttcagcaga 362 |||||||||||||||||||| Sbjct: 5716 aaaacagtatgttcagcaga 5735
>gb|AC104072.3| Homo sapiens BAC clone RP11-320H14 from 4, complete sequence Length = 112494 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 318 attacaaaatgatgaagaaa 337 |||||||||||||||||||| Sbjct: 18543 attacaaaatgatgaagaaa 18562
>gb|AC027311.4| Homo sapiens chromosome 5 clone CTC-229B20, complete sequence Length = 119063 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 90 tcctcatccccttcccggtg 109 |||||||||||||||||||| Sbjct: 96621 tcctcatccccttcccggtg 96602
>gb|AC011365.5| Homo sapiens chromosome 5 clone CTC-558O2, complete sequence Length = 152723 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 90 tcctcatccccttcccggtg 109 |||||||||||||||||||| Sbjct: 5646 tcctcatccccttcccggtg 5627
>gb|AC093745.3| Homo sapiens BAC clone RP11-25B15 from 4, complete sequence Length = 166191 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 318 attacaaaatgatgaagaaa 337 |||||||||||||||||||| Sbjct: 11485 attacaaaatgatgaagaaa 11504
>gb|AC146091.2| Pan troglodytes BAC clone RP43-47P19 from chromosome 7, complete sequence Length = 139240 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 377 agaaatcatgaacaggttct 396 |||||||||||||||||||| Sbjct: 58323 agaaatcatgaacaggttct 58342
>gb|AY162861.1| Berberis gilgiana PI-2 mRNA, partial cds Length = 786 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 322 caaaatgatgaagaaaaagg 341 |||||||||||||||||||| Sbjct: 354 caaaatgatgaagaaaaagg 373
>gb|AY162860.1| Berberis gilgiana PI-1 mRNA, partial cds Length = 793 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 322 caaaatgatgaagaaaaagg 341 |||||||||||||||||||| Sbjct: 354 caaaatgatgaagaaaaagg 373
>dbj|AB025629.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MOE17 Length = 81677 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 323 aaaatgatgaagaaaaaggt 342 |||||||||||||||||||| Sbjct: 23701 aaaatgatgaagaaaaaggt 23720
>gb|AC099736.10| Mus musculus chromosome 15, clone RP23-228F5, complete sequence Length = 186137 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 429 ttgaaaaggttgtgctcttt 448 |||||||||||||||||||| Sbjct: 172349 ttgaaaaggttgtgctcttt 172368
>dbj|AP003305.2| Homo sapiens genomic DNA, chromosome 11q clone:RP11-667E8, complete sequence Length = 134764 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 323 aaaatgatgaagaaaaaggt 342 |||||||||||||||||||| Sbjct: 98519 aaaatgatgaagaaaaaggt 98538
>dbj|AP000857.4| Homo sapiens genomic DNA, chromosome 11q, clone:CMB9-103D18, complete sequences Length = 144484 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 255 tggttaattttgggaaggta 274 |||||||||||||||||||| Sbjct: 112935 tggttaattttgggaaggta 112954
>gb|BC079299.1| Rattus norvegicus similar to RIKEN cDNA 4933439F11, mRNA (cDNA clone MGC:94436 IMAGE:7134519), complete cds Length = 1500 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 485 gagaaattgggacaacagcg 504 |||||||||||||||||||| Sbjct: 1427 gagaaattgggacaacagcg 1408
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 199 gaggagccgccgaagaacac 218 |||||||||||||||||||| Sbjct: 4474938 gaggagccgccgaagaacac 4474919
>gb|AF004217.1|AF004217 Arabidopsis thaliana ethylene-insensitive3 (EIN3) gene, complete cds Length = 3387 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 323 aaaatgatgaagaaaaaggt 342 |||||||||||||||||||| Sbjct: 404 aaaatgatgaagaaaaaggt 385
>gb|AF004216.1|AF004216 Arabidopsis thaliana ethylene-insensitive3 (EIN3) mRNA, complete cds Length = 2310 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 323 aaaatgatgaagaaaaaggt 342 |||||||||||||||||||| Sbjct: 137 aaaatgatgaagaaaaaggt 118
>ref|NM_001013861.1| Rattus norvegicus similar to RIKEN cDNA 4933439F11 (RGD1307851), mRNA Length = 1500 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 485 gagaaattgggacaacagcg 504 |||||||||||||||||||| Sbjct: 1427 gagaaattgggacaacagcg 1408
>gb|AC172110.2| Rhesus Macaque CHR7 BAC CH250-119L7 (Children's Hospital Oakland Research Institute Rhesus macaque Adult Male BAC Library) complete sequence Length = 219949 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 377 agaaatcatgaacaggttct 396 |||||||||||||||||||| Sbjct: 216992 agaaatcatgaacaggttct 216973
>gb|AC100244.12| Mus musculus chromosome 8, clone RP23-64K12, complete sequence Length = 212430 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 332 aagaaaaaggtaaaacagtatgtt 355 |||||||||| ||||||||||||| Sbjct: 151344 aagaaaaaggcaaaacagtatgtt 151367
>emb|AL137229.4|CNS01DWK Human chromosome 14 DNA sequence BAC C-2246N19 of library CalTech-D from chromosome 14 of Homo sapiens (Human), complete sequence Length = 125780 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 291 tggaggagtggaaagaatac 310 |||||||||||||||||||| Sbjct: 49807 tggaggagtggaaagaatac 49788
>gb|M25064.1|YSCKAR2A S.cerevisiae karyogamy (KAR2) gene, complete cds Length = 2780 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 289 attggaggagtggaaagaat 308 |||||||||||||||||||| Sbjct: 395 attggaggagtggaaagaat 376
>gb|M25394.1|YSCKAR2 Yeast (S.cerevisiae) protein encoding protein folding in the endoplasmic reticulum (KAR2) gene, complete cds Length = 2780 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 289 attggaggagtggaaagaat 308 |||||||||||||||||||| Sbjct: 395 attggaggagtggaaagaat 376
>gb|M31006.1|YSCBIP S.cerevisiae glucose-regulated protein (GRP78, BiP, KAR2) gene, complete cds Length = 2714 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 289 attggaggagtggaaagaat 308 |||||||||||||||||||| Sbjct: 741 attggaggagtggaaagaat 722
>dbj|AP005117.2| Homo sapiens genomic DNA, chromosome 18p clone:RP11-21G15, complete sequences Length = 148790 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 322 caaaatgatgaagaaaaagg 341 |||||||||||||||||||| Sbjct: 68035 caaaatgatgaagaaaaagg 68016 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,958,753 Number of Sequences: 3902068 Number of extensions: 4958753 Number of successful extensions: 108163 Number of sequences better than 10.0: 68 Number of HSP's better than 10.0 without gapping: 68 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 107851 Number of HSP's gapped (non-prelim): 312 length of query: 583 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 560 effective length of database: 17,143,297,704 effective search space: 9600246714240 effective search space used: 9600246714240 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)