ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal15a11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC102220.8| Mus musculus chromosome 7, clone RP24-117E17, com... 42 1.3
2gb|AC102299.11| Mus musculus chromosome 7, clone RP24-397O2, com... 42 1.3
3emb|AL451124.13| Human DNA sequence from clone RP11-20P5 on chro... 42 1.3
4dbj|AP007164.1| Aspergillus oryzae RIB40 genomic DNA, SC111 42 1.3
5gb|AC161490.7| Mus musculus chromosome 7, clone RP23-307M23, com... 40 5.1
6gb|AC132260.3| Mus musculus BAC clone RP24-370C1 from chromosome... 40 5.1
7ref|XM_816535.1| Trypanosoma cruzi strain CL Brener hypothetical... 40 5.1
8gb|BC043730.1| Xenopus laevis MAP/microtubule affinity-regulatin... 40 5.1
9gb|AC069562.51| Mus musculus strain C57BL/6J clone rp23-317e13 m... 40 5.1
10ref|NM_001030369.1| Xenopus tropicalis mark2 protein (mark2), mRNA 40 5.1
11gb|BC090574.1| Xenopus tropicalis mark2 protein, mRNA (cDNA clon... 40 5.1
12emb|AL732488.7| Zebrafish DNA sequence from clone RP71-1C10 in l... 40 5.1
13emb|AL161558.2|ATCHRIV58 Arabidopsis thaliana DNA chromosome 4, ... 40 5.1
14emb|AL031018.1|ATF7H19 Arabidopsis thaliana DNA chromosome 4, BA... 40 5.1
15gb|AC005170.3| Arabidopsis thaliana chromosome 2 clone T29E15 ma... 40 5.1
16tpg|BK001596.1| TPA: TPA_exp: Emericella nidulans transposon MAT... 40 5.1
17tpg|BK001595.1| TPA: TPA_exp: Emericella nidulans transposon MAT... 40 5.1
18gb|AC079613.7| Homo sapiens BAC clone RP11-325O22 from 2, comple... 40 5.1
19gb|AF509738.1| Xenopus laevis Ser/Thr protein kinase PAR-1B alph... 40 5.1
20ref|XM_311972.2| Anopheles gambiae str. PEST ENSANGP00000010845 ... 40 5.1
21ref|XM_563184.1| Anopheles gambiae str. PEST ENSANGP00000026898 ... 40 5.1
22emb|CR847564.6| Zebrafish DNA sequence from clone DKEY-190E10 in... 40 5.1

>gb|AC102220.8| Mus musculus chromosome 7, clone RP24-117E17, complete sequence
          Length = 182996

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 316   ccaaataaaatgaagtgctat 336
             |||||||||||||||||||||
Sbjct: 38766 ccaaataaaatgaagtgctat 38746



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>gb|AC102299.11| Mus musculus chromosome 7, clone RP24-397O2, complete sequence
          Length = 167677

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 316    ccaaataaaatgaagtgctat 336
              |||||||||||||||||||||
Sbjct: 142014 ccaaataaaatgaagtgctat 141994



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>emb|AL451124.13| Human DNA sequence from clone RP11-20P5 on chromosome 9 Contains the 3'
             end of a variant of a novel gene (FLJ31810) and a novel
             pseudogene (FLJ37424), complete sequence
          Length = 164291

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 318   aaataaaatgaagtgctatgg 338
             |||||||||||||||||||||
Sbjct: 55369 aaataaaatgaagtgctatgg 55389



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>dbj|AP007164.1| Aspergillus oryzae RIB40 genomic DNA, SC111
          Length = 2356219

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 110     caaatcaacaatgtgcctcacttag 134
               |||||||||||||||| ||||||||
Sbjct: 1543442 caaatcaacaatgtgcttcacttag 1543418



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>gb|AC161490.7| Mus musculus chromosome 7, clone RP23-307M23, complete sequence
          Length = 169596

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 316  ccaaataaaatgaagtgcta 335
            ||||||||||||||||||||
Sbjct: 6964 ccaaataaaatgaagtgcta 6945



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>gb|AC132260.3| Mus musculus BAC clone RP24-370C1 from chromosome 13, complete sequence
          Length = 160903

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 24     ttccaaggctgatgctctga 43
              ||||||||||||||||||||
Sbjct: 137985 ttccaaggctgatgctctga 137966



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>ref|XM_816535.1| Trypanosoma cruzi strain CL Brener hypothetical protein
           (Tc00.1047053508461.360) partial mRNA
          Length = 2424

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 153 tggtgcagaaagaagcaatg 172
           ||||||||||||||||||||
Sbjct: 891 tggtgcagaaagaagcaatg 872



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>gb|BC043730.1| Xenopus laevis MAP/microtubule affinity-regulating kinase 2, mRNA
            (cDNA clone MGC:52504 IMAGE:4930252), complete cds
          Length = 3362

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 307  aaatctattccaaataaaat 326
            ||||||||||||||||||||
Sbjct: 2897 aaatctattccaaataaaat 2878



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>gb|AC069562.51| Mus musculus strain C57BL/6J clone rp23-317e13 map 13, complete
             sequence
          Length = 215278

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 24    ttccaaggctgatgctctga 43
             ||||||||||||||||||||
Sbjct: 11036 ttccaaggctgatgctctga 11017



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>ref|NM_001030369.1| Xenopus tropicalis mark2 protein (mark2), mRNA
          Length = 3350

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 307  aaatctattccaaataaaat 326
            ||||||||||||||||||||
Sbjct: 2846 aaatctattccaaataaaat 2827



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>gb|BC090574.1| Xenopus tropicalis mark2 protein, mRNA (cDNA clone MGC:69238
            IMAGE:5307876), complete cds
          Length = 3350

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 307  aaatctattccaaataaaat 326
            ||||||||||||||||||||
Sbjct: 2846 aaatctattccaaataaaat 2827



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>emb|AL732488.7| Zebrafish DNA sequence from clone RP71-1C10 in linkage group 12
             Contains part of a novel ring finger gene, a novel zinc
             finger pseudogene, a novel zinc finger gene and a novel
             gene similar to valop (vertebrate ancient long opsin),
             complete sequence
          Length = 165151

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 259   tgctgcaacacagacctctgcaac 282
             ||||||||||||||| ||||||||
Sbjct: 51208 tgctgcaacacagacttctgcaac 51185



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>emb|AL161558.2|ATCHRIV58 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 58
          Length = 193550

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 232   aatttcaaaatctcattcgt 251
             ||||||||||||||||||||
Sbjct: 85780 aatttcaaaatctcattcgt 85799



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>emb|AL031018.1|ATF7H19 Arabidopsis thaliana DNA chromosome 4, BAC clone F7H19 (ESSA project)
          Length = 139316

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 232   aatttcaaaatctcattcgt 251
             ||||||||||||||||||||
Sbjct: 56693 aatttcaaaatctcattcgt 56712



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>gb|AC005170.3| Arabidopsis thaliana chromosome 2 clone T29E15 map CIC06C07, complete
             sequence
          Length = 108056

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 105   ttcatcaaatcaacaatgtg 124
             ||||||||||||||||||||
Sbjct: 20535 ttcatcaaatcaacaatgtg 20516



 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 105  ttcatcaaatcaacaatgtg 124
            ||||||||||||||||||||
Sbjct: 7405 ttcatcaaatcaacaatgtg 7386



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>tpg|BK001596.1| TPA: TPA_exp: Emericella nidulans transposon MATE-5, complete
            sequence
          Length = 6317

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 135  agaaatctattatgaaggtg 154
            ||||||||||||||||||||
Sbjct: 2027 agaaatctattatgaaggtg 2046



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>tpg|BK001595.1| TPA: TPA_exp: Emericella nidulans transposon MATE-4 transposon and
            Tc1/mariner-like element, complete sequence
          Length = 7477

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 134  gagaaatctattatgaaggt 153
            ||||||||||||||||||||
Sbjct: 1819 gagaaatctattatgaaggt 1838



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>gb|AC079613.7| Homo sapiens BAC clone RP11-325O22 from 2, complete sequence
          Length = 164548

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 226   tatgcaaatttcaaaatctcattc 249
             ||||||||||||||||| ||||||
Sbjct: 48643 tatgcaaatttcaaaatgtcattc 48620



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>gb|AF509738.1| Xenopus laevis Ser/Thr protein kinase PAR-1B alpha mRNA, complete cds
          Length = 3483

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 307  aaatctattccaaataaaat 326
            ||||||||||||||||||||
Sbjct: 2832 aaatctattccaaataaaat 2813



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>ref|XM_311972.2| Anopheles gambiae str. PEST ENSANGP00000010845
           (ENSANGG00000008356), partial mRNA
          Length = 603

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 295 agcgcgcccagcaaatctat 314
           ||||||||||||||||||||
Sbjct: 128 agcgcgcccagcaaatctat 147



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>ref|XM_563184.1| Anopheles gambiae str. PEST ENSANGP00000026898
           (ENSANGG00000008356), partial mRNA
          Length = 972

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 295 agcgcgcccagcaaatctat 314
           ||||||||||||||||||||
Sbjct: 194 agcgcgcccagcaaatctat 213



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>emb|CR847564.6| Zebrafish DNA sequence from clone DKEY-190E10 in linkage group 14,
             complete sequence
          Length = 122704

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 259   tgctgcaacacagacctctgcaac 282
             ||||||||||||||| ||||||||
Sbjct: 80723 tgctgcaacacagacttctgcaac 80700


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,278,673
Number of Sequences: 3902068
Number of extensions: 4278673
Number of successful extensions: 82027
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 81985
Number of HSP's gapped (non-prelim): 42
length of query: 383
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 361
effective length of database: 17,147,199,772
effective search space: 6190139117692
effective search space used: 6190139117692
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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