ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal14l09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ZFNL1_ARATH (Q84W91) Zinc finger CCCH type domain-containing pro... 31 1.0
2TIP32_ARATH (O22588) Probable aquaporin TIP3.2 (Tonoplast intrin... 30 1.8
3UB2Q2_MOUSE (Q8K2Z8) Ubiquitin-conjugating enzyme E2 Q2 (EC 6.3.... 30 1.8
4TIP31_ARATH (P26587) Aquaporin TIP3.1 (Tonoplast intrinsic prote... 28 6.7
5VTER_HHV11 (P04295) Probable DNA packaging protein (Terminase) 28 6.7

>ZFNL1_ARATH (Q84W91) Zinc finger CCCH type domain-containing protein ZFN-like 1|
          Length = 468

 Score = 31.2 bits (69), Expect = 1.0
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = +2

Query: 8   HPRPAGSSLSPPPAILTRFDPPLE 79
           HP+PAG+++ PPPA   +F P ++
Sbjct: 161 HPQPAGTTVPPPPASAPQFYPSVQ 184



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>TIP32_ARATH (O22588) Probable aquaporin TIP3.2 (Tonoplast intrinsic protein|
           3.2) (Beta-tonoplast intrinsic protein) (Beta-TIP)
          Length = 267

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
 Frame = -3

Query: 422 GLALESSIPDSHLKVVDSSAHGS--GAVGLHDSDVMXVVVDAEVLDGHLVNGHDCKEARA 249
           GL +E  +  + + VV S+A     G++G+     + ++V A +L G   +G     ARA
Sbjct: 152 GLLMEIILTFALVYVVYSTAIDPKRGSIGIIAPLAIGLIVGANILVGGPFDGASMNPARA 211

Query: 248 VGGVLLGW 225
            G  L+GW
Sbjct: 212 FGPALVGW 219



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>UB2Q2_MOUSE (Q8K2Z8) Ubiquitin-conjugating enzyme E2 Q2 (EC 6.3.2.19)|
          (Ubiquitin-protein ligase Q2) (Ubiquitin carrier
          protein Q2)
          Length = 378

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 12/17 (70%), Positives = 13/17 (76%)
 Frame = +2

Query: 2  PPHPRPAGSSLSPPPAI 52
          PP P P GSSLSPPP +
Sbjct: 41 PPPPPPPGSSLSPPPPL 57



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>TIP31_ARATH (P26587) Aquaporin TIP3.1 (Tonoplast intrinsic protein 3.1)|
           (Alpha-tonoplast intrinsic protein) (Alpha-TIP)
          Length = 268

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -3

Query: 353 GAVGLHDSDVMXVVVDAEVLDGHLVNGHDCKEARAVGGVLLGW 225
           G++G+     + ++V A +L G   +G     ARA G  L+GW
Sbjct: 177 GSLGIIAPLAIGLIVGANILVGGPFSGASMNPARAFGPALVGW 219



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>VTER_HHV11 (P04295) Probable DNA packaging protein (Terminase)|
          Length = 735

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 17/44 (38%), Positives = 25/44 (56%)
 Frame = -1

Query: 295 LTDILSMDTTAKRPELLAVFCSDGMGSESSAAAVATHSAGDRHR 164
           LT +L++   A R   +AV   +G  S+ SA A+ATH   + HR
Sbjct: 562 LTQVLALHPGAFRGVRVAV---EGNSSQDSAVAIATHVHTEMHR 602


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,082,879
Number of Sequences: 219361
Number of extensions: 671383
Number of successful extensions: 3503
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3070
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3490
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2278320915
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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