ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal14l08 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY268139.1| Hordeum vulgare BAC 184G9, complete sequece Length = 120562 Score = 97.6 bits (49), Expect = 3e-17 Identities = 119/141 (84%), Gaps = 1/141 (0%) Strand = Plus / Plus Query: 267 tcctatatatcaatcttcgtcac-ggactattccagaactcctcgtggcgtccaagatct 325 |||||||||||||| ||||| | |||| ||||||||| ||||||| ||||| ||||| Sbjct: 42032 tcctatatatcaatattcgtttccggaccattccagaaaccctcgtgacgtccgtgatct 42091 Query: 326 catctgttactccgaacaacttttattcaccaacacacataactcaactataccaaaact 385 |||| | |||||||||||| || |||||||||| |||||||||||||||| |||| Sbjct: 42092 catccgggactccgaacaaccttcggtcaccaacacctataactcaactataccgaaacg 42151 Query: 386 tcactgaaccttaagtgtgca 406 |||| |||||||||||||||| Sbjct: 42152 tcaccgaaccttaagtgtgca 42172 Score = 79.8 bits (40), Expect = 6e-12 Identities = 116/140 (82%), Gaps = 1/140 (0%) Strand = Plus / Plus Query: 266 ttcctatatatcaatcttcgtc-acggactattccagaactcctcgtggcgtccaagatc 324 ||||| ||||||||||||| | |||||| ||||| ||| ||||||| |||| ||||| Sbjct: 99587 ttcctgtatatcaatcttcatttacggaccattccggaaaccctcgtgacgtctgagatc 99646 Query: 325 tcatctgttactccgaacaacttttattcaccaacacacataactcaactataccaaaac 384 ||||| ||| |||| ||| || | ||||||||||| |||||||||||||||| |||| Sbjct: 99647 tcatcccggacttcgaataaccttcagtcaccaacacatataactcaactataccgaaac 99706 Query: 385 ttcactgaaccttaagtgtg 404 |||| |||||||||||||| Sbjct: 99707 gtcaccgaaccttaagtgtg 99726 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 267 tcctatatatcaatcttcgtc 287 ||||||||||||||||||||| Sbjct: 85728 tcctatatatcaatcttcgtc 85708 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 267 tcctatatatcaatcttcgtc 287 ||||||||||||||||||||| Sbjct: 78848 tcctatatatcaatcttcgtc 78828 Score = 40.1 bits (20), Expect = 5.4 Identities = 54/64 (84%), Gaps = 1/64 (1%) Strand = Plus / Minus Query: 267 tcctatatatcaatcttcg-tcacggactattccagaactcctcgtggcgtccaagatct 325 ||||||||||||||||| | | ||||| ||||||||| ||||||| ||||| ||||| Sbjct: 11552 tcctatatatcaatcttagtttccggaccattccagaaaccctcgtgacgtccgtgatct 11493 Query: 326 catc 329 |||| Sbjct: 11492 catc 11489
>emb|AJ582609.1|HEU582609 Hordeum euclaston retrotransposon BARE1 long terminal repeat DNA, clone HEUCD Length = 1951 Score = 91.7 bits (46), Expect = 2e-15 Identities = 88/102 (86%) Strand = Plus / Minus Query: 304 ctcctcgtggcgtccaagatctcatctgttactccgaacaacttttattcaccaacacac 363 ||||||||| ||||| ||||||||| | |||||||||||| || | |||||| || || Sbjct: 953 ctcctcgtgatgtccaggatctcatccgggactccgaacaaccttcagtcaccaccatac 894 Query: 364 ataactcaactataccaaaacttcactgaaccttaagtgtgc 405 ||||||| ||||||||||||| |||| ||||||||||||||| Sbjct: 893 ataactctactataccaaaacgtcaccgaaccttaagtgtgc 852
>emb|Y18774.2|HROY18774 Hordeum roshevitzii BARE-1 long terminal repeat DNA (HROSC) Length = 1797 Score = 79.8 bits (40), Expect = 6e-12 Identities = 119/143 (83%), Gaps = 3/143 (2%) Strand = Plus / Minus Query: 266 ttcctatatatcaatctt--cgtcacggactattccagaactcctcgtggcgtccaagat 323 |||||||||||||||||| | || ||||| ||||| || ||||||||| ||||| ||| Sbjct: 996 ttcctatatatcaatctttacctc-cggaccattccggagctcctcgtgacgtccgggat 938 Query: 324 ctcatctgttactccgaacaacttttattcaccaacacacataactcaactataccaaaa 383 |||||| | |||||||||||| || |||||| | ||||||||| |||||||||||| Sbjct: 937 ctcatccgggactccgaacaaccttcggtcaccaccttacataactctactataccaaaa 878 Query: 384 cttcactgaaccttaagtgtgca 406 | || | |||||||||||||||| Sbjct: 877 cgtcgccgaaccttaagtgtgca 855
>emb|AJ582533.1|HVU582533 Hordeum vulgare BARE-1 long terminal repeat HvLea-20 mRNA Length = 727 Score = 75.8 bits (38), Expect = 1e-10 Identities = 74/86 (86%) Strand = Plus / Minus Query: 321 gatctcatctgttactccgaacaacttttattcaccaacacacataactcaactatacca 380 ||||||||||| ||||||||||||||| | |||||||| ||||||||||||||| Sbjct: 119 gatctcatctgggactccgaacaactttcggttaccaacacctataactcaactatactg 60 Query: 381 aaacttcactgaaccttaagtgtgca 406 |||| |||| |||||||||||||||| Sbjct: 59 aaacgtcaccgaaccttaagtgtgca 34
>gb|AY642926.1| Hordeum vulgare BAC CC24_14, complete sequence Length = 184425 Score = 73.8 bits (37), Expect = 4e-10 Identities = 116/141 (82%), Gaps = 1/141 (0%) Strand = Plus / Minus Query: 267 tcctatatatcaatcttcgtcac-ggactattccagaactcctcgtggcgtccaagatct 325 |||||||||||||||||||| | |||| ||||| ||| ||||||| ||||| ||||| Sbjct: 48101 tcctatatatcaatcttcgtttccggaccattccggaaaccctcgtgacgtccgtgatct 48042 Query: 326 catctgttactccgaacaacttttattcaccaacacacataactcaactataccaaaact 385 ||| |||||||||||| || | ||||||||| ||||||||||||||| ||||| Sbjct: 48041 catacaggactccgaacaaccttcggttaccaacacatataactcaactatactaaaaca 47982 Query: 386 tcactgaaccttaagtgtgca 406 ||| |||||||||||||||| Sbjct: 47981 tcatcgaaccttaagtgtgca 47961 Score = 54.0 bits (27), Expect = 4e-04 Identities = 70/83 (84%), Gaps = 1/83 (1%) Strand = Plus / Minus Query: 267 tcctatatatcaatcttcg-tcacggactattccagaactcctcgtggcgtccaagatct 325 ||||||||||||||||| || ||||| ||||| || ||||||||| ||||| ||||| Sbjct: 1370 tcctatatatcaatctttactcccggaccattccggagctcctcgtgacgtccgggatct 1311 Query: 326 catctgttactccgaacaacttt 348 |||| | ||||||||||||||| Sbjct: 1310 catccgggactccgaacaacttt 1288 Score = 50.1 bits (25), Expect = 0.006 Identities = 71/84 (84%), Gaps = 3/84 (3%) Strand = Plus / Plus Query: 267 tcctatatatcaatctt--cgtcacggactattccagaactcctcgtggcgtccaagatc 324 ||||||||||||||||| | || ||||| ||||| || ||||||||| ||||| |||| Sbjct: 56828 tcctatatatcaatctttacctc-cggaccattccggagctcctcgtgacgtccgggatc 56886 Query: 325 tcatctgttactccgaacaacttt 348 ||||| | ||||||||||||||| Sbjct: 56887 tcatccgggactccgaacaacttt 56910 Score = 48.1 bits (24), Expect = 0.022 Identities = 67/80 (83%), Gaps = 1/80 (1%) Strand = Plus / Plus Query: 267 tcctatatatcaatcttcg-tcacggactattccagaactcctcgtggcgtccaagatct 325 ||||||||||||||||||| | ||||| ||||| ||| ||||||| ||||| ||||| Sbjct: 91080 tcctatatatcaatcttcgtttccggaccattccggaaaccctcgtgacgtccgtgatct 91139 Query: 326 catctgttactccgaacaac 345 |||| | |||||||||||| Sbjct: 91140 catccgggactccgaacaac 91159 Score = 48.1 bits (24), Expect = 0.022 Identities = 67/80 (83%), Gaps = 1/80 (1%) Strand = Plus / Minus Query: 267 tcctatatatcaatcttcg-tcacggactattccagaactcctcgtggcgtccaagatct 325 ||||||||||||||||||| | ||||| ||||| ||| ||||||| ||||| ||||| Sbjct: 88835 tcctatatatcaatcttcgtttccggaccattccggaaaccctcgtgacgtccgtgatct 88776 Query: 326 catctgttactccgaacaac 345 |||| | |||||||||||| Sbjct: 88775 catccgggactccgaacaac 88756 Score = 48.1 bits (24), Expect = 0.022 Identities = 67/80 (83%), Gaps = 1/80 (1%) Strand = Plus / Minus Query: 267 tcctatatatcaatcttcgtcacg-gactattccagaactcctcgtggcgtccaagatct 325 |||||||||||||||||||| | ||| ||||| ||| ||||||| ||||| ||||| Sbjct: 26252 tcctatatatcaatcttcgtttccagaccattccggaaaccctcgtgacgtccgtgatct 26193 Query: 326 catctgttactccgaacaac 345 |||||| |||||||||||| Sbjct: 26192 catctgggactccgaacaac 26173 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 267 tcctatatatcaatcttcgt 286 |||||||||||||||||||| Sbjct: 100757 tcctatatatcaatcttcgt 100738 Score = 40.1 bits (20), Expect = 5.4 Identities = 66/80 (82%), Gaps = 1/80 (1%) Strand = Plus / Minus Query: 267 tcctatatatcaatcttcgtcac-ggactattccagaactcctcgtggcgtccaagatct 325 |||||||||||||||||||| | ||| ||||| ||| ||||||| ||||| ||||| Sbjct: 97775 tcctatatatcaatcttcgtttccggatcattccggaaaccctcgtgacgtccgtgatct 97716 Query: 326 catctgttactccgaacaac 345 |||||| ||| |||||||| Sbjct: 97715 catctgggacttcgaacaac 97696
>gb|AY485644.1| Triticum monococcum phosphatidylserine decarboxylase, ZCCT2, ZCCT1, and SNF2P genes, complete cds; nucellin pseudogene, complete sequence; putative transposase, phosphatidylinositol phosphatidylcholine transfer protein sec14 cytosolic-like protein, and phytochrome P450-like protein genes, complete cds; and unknown genes Length = 438828 Score = 71.9 bits (36), Expect = 2e-09 Identities = 54/60 (90%) Strand = Plus / Minus Query: 289 cggactattccagaactcctcgtggcgtccaagatctcatctgttactccgaacaacttt 348 ||||| ||||| |||||||||||| |||||||||||||||| | ||||||||||||||| Sbjct: 126264 cggaccattccggaactcctcgtgacgtccaagatctcatcagggactccgaacaacttt 126205
>gb|AF474071.1| Hordeum vulgare subsp. vulgare cultivar Morex BAC clone 745c13, complete sequence Length = 102842 Score = 69.9 bits (35), Expect = 6e-09 Identities = 86/103 (83%) Strand = Plus / Minus Query: 304 ctcctcgtggcgtccaagatctcatctgttactccgaacaacttttattcaccaacacac 363 ||||||||||||||| |||||||| | ||||||||||||||| | |||||||| Sbjct: 97878 ctcctcgtggcgtcctggatctcattcgggactccgaacaactttcggttaccaacacct 97819 Query: 364 ataactcaactataccaaaacttcactgaaccttaagtgtgca 406 ||||||||||||||| |||| ||| |||||||||||||||| Sbjct: 97818 gtaactcaactataccgaaacatcatcgaaccttaagtgtgca 97776 Score = 65.9 bits (33), Expect = 9e-08 Identities = 63/73 (86%) Strand = Plus / Minus Query: 334 actccgaacaacttttattcaccaacacacataactcaactataccaaaacttcactgaa 393 ||||||||||||||| | |||||||| |||||||||||||||| |||| ||| ||| Sbjct: 82703 actccgaacaactttcggttaccaacacctataactcaactataccgaaacatcatcgaa 82644 Query: 394 ccttaagtgtgca 406 ||||||||||||| Sbjct: 82643 ccttaagtgtgca 82631 Score = 50.1 bits (25), Expect = 0.006 Identities = 43/49 (87%) Strand = Plus / Plus Query: 358 acacacataactcaactataccaaaacttcactgaaccttaagtgtgca 406 ||||| ||||||||||||||| ||||| ||| |||||||| ||||||| Sbjct: 70893 acacatataactcaactatactaaaacatcaacgaaccttatgtgtgca 70941 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 267 tcctatatatcaatcttcgt 286 |||||||||||||||||||| Sbjct: 70802 tcctatatatcaatcttcgt 70821 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 267 tcctatatatcaatcttcgt 286 |||||||||||||||||||| Sbjct: 64379 tcctatatatcaatcttcgt 64398
>emb|AJ582611.1|HPU582611 Hordeum pusillum retrotransposon BARE1 long terminal repeat DNA, clone HPUSD Length = 1564 Score = 67.9 bits (34), Expect = 2e-08 Identities = 97/118 (82%) Strand = Plus / Minus Query: 289 cggactattccagaactcctcgtggcgtccaagatctcatctgttactccgaacaacttt 348 ||||| ||||| || ||||||||| ||||| ||||||||| | |||||||||||| || Sbjct: 841 cggaccattccggagctcctcgtgacgtccgggatctcatccgggactccgaacaacctt 782 Query: 349 tattcaccaacacacataactcaactataccaaaacttcactgaaccttaagtgtgca 406 ||||||||| ||||||||||| ||||| |||| ||| |||| ||||||||||| Sbjct: 781 cgatcaccaacatacataactcaataataccgaaacgtcatcgaacgttaagtgtgca 724
>gb|AY013246.1| Hordeum vulgare chromosome 5 BAC 635P2, complete sequence Length = 102433 Score = 67.9 bits (34), Expect = 2e-08 Identities = 74/86 (86%), Gaps = 1/86 (1%) Strand = Plus / Minus Query: 321 gatctcatctgttactccgaacaacttttattcaccaacacacataactcaactatacca 380 ||||||||||| |||||||||||| || | ||| ||||| ||||||||||||||| | Sbjct: 44111 gatctcatctgggactccgaacaacattcggtaacc-acacatataactcaactatacta 44053 Query: 381 aaacttcactgaaccttaagtgtgca 406 |||| |||| |||||||||||||||| Sbjct: 44052 aaacatcaccgaaccttaagtgtgca 44027 Score = 48.1 bits (24), Expect = 0.022 Identities = 67/80 (83%), Gaps = 1/80 (1%) Strand = Plus / Plus Query: 267 tcctatatatcaatcttcg-tcacggactattccagaactcctcgtggcgtccaagatct 325 ||||||||||||||||||| | ||||| ||||| ||| ||||||| ||||| ||||| Sbjct: 58804 tcctatatatcaatcttcgtttccggaccattccggaaaccctcgtgacgtccgtgatct 58863 Query: 326 catctgttactccgaacaac 345 |||| | |||||||||||| Sbjct: 58864 catccgggactccgaacaac 58883 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 267 tcctatatatcaatcttcgtc 287 ||||||||||||||||||||| Sbjct: 59871 tcctatatatcaatcttcgtc 59851 Score = 42.1 bits (21), Expect = 1.4 Identities = 42/49 (85%) Strand = Plus / Minus Query: 358 acacacataactcaactataccaaaacttcactgaaccttaagtgtgca 406 ||||| ||||||||||||||| ||||| || | || |||||||||||| Sbjct: 51188 acacatataactcaactatactaaaacatcgccgagtcttaagtgtgca 51140 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 267 tcctatatatcaatcttcgt 286 |||||||||||||||||||| Sbjct: 52035 tcctatatatcaatcttcgt 52054
>gb|AY146587.1| Triticum turgidum subsp. durum BAC 107G22, complete sequence Length = 142018 Score = 63.9 bits (32), Expect = 4e-07 Identities = 53/60 (88%) Strand = Plus / Plus Query: 289 cggactattccagaactcctcgtggcgtccaagatctcatctgttactccgaacaacttt 348 |||| |||||||||||||||| || |||||| ||||||||| | ||||||||||||||| Sbjct: 40836 cggattattccagaactcctcatgacgtccaggatctcatccgggactccgaacaacttt 40895 Score = 56.0 bits (28), Expect = 9e-05 Identities = 52/60 (86%) Strand = Plus / Plus Query: 289 cggactattccagaactcctcgtggcgtccaagatctcatctgttactccgaacaacttt 348 |||| |||||| |||||||||||| |||||| ||||||||| | |||||||| |||||| Sbjct: 56212 cggattattccggaactcctcgtgacgtccaggatctcatccgggactccgaaaaacttt 56271 Score = 54.0 bits (27), Expect = 4e-04 Identities = 51/59 (86%) Strand = Plus / Plus Query: 290 ggactattccagaactcctcgtggcgtccaagatctcatctgttactccgaacaacttt 348 |||| ||||| |||||||||||| ||||| ||||||||| | ||||||||||||||| Sbjct: 50612 ggaccattccggaactcctcgtgacgtccgggatctcatcagggactccgaacaacttt 50670 Score = 42.1 bits (21), Expect = 1.4 Identities = 52/61 (85%), Gaps = 1/61 (1%) Strand = Plus / Plus Query: 289 cggactattccagaactcctcgtggcgtccaagatctcatctgttactccgaacaacttt 348 ||||| ||||| |||||||||||| ||||| ||||||||| ||||||||||||||| Sbjct: 43982 cggaccattccggaactcctcgtgacgtcc-cgatctcatccaggactccgaacaacttt 44040 Query: 349 t 349 | Sbjct: 44041 t 44041
>emb|AJ582404.1|HVU582404 Hordeum vulgare BARE-1 long terminal repeat Hv-a3 DNA Length = 471 Score = 63.9 bits (32), Expect = 4e-07 Identities = 69/80 (86%), Gaps = 1/80 (1%) Strand = Plus / Minus Query: 267 tcctatatatcaatcttcgtcac-ggactattccagaactcctcgtggcgtccaagatct 325 |||||||||||||||||||| | |||||||||| ||| ||||||| |||||| ||||| Sbjct: 174 tcctatatatcaatcttcgtttccggactattccggaaaccctcgtgacgtccatgatct 115 Query: 326 catctgttactccgaacaac 345 |||| | |||||||||||| Sbjct: 114 catccgggactccgaacaac 95
>emb|Y14573.1|HVCH4H Hordeum vulgare DNA for chromosome 4H Length = 59748 Score = 63.9 bits (32), Expect = 4e-07 Identities = 38/40 (95%) Strand = Plus / Plus Query: 244 tttccggaacccgaatacctctttcctatatatcaatctt 283 ||||||||||||||||||| ||||||||||||| |||||| Sbjct: 31038 tttccggaacccgaataccactttcctatatataaatctt 31077
>emb|AJ582612.1|HPU582612 Hordeum pusillum retrotransposon BARE1 long terminal repeat DNA, clone HPUSE Length = 1891 Score = 61.9 bits (31), Expect = 1e-06 Identities = 85/103 (82%) Strand = Plus / Minus Query: 304 ctcctcgtggcgtccaagatctcatctgttactccgaacaacttttattcaccaacacac 363 ||||||||| ||||| ||||||||||| |||| ||||||| || |||| | || || Sbjct: 953 ctcctcgtgacgtccgggatctcatctgggactctgaacaaccttcggtcacaaccatac 894 Query: 364 ataactcaactataccaaaacttcactgaaccttaagtgtgca 406 ||||||| |||||| | |||| |||| |||||||||||||||| Sbjct: 893 ataactctactatatcgaaacatcaccgaaccttaagtgtgca 851
>gb|U73173.1|HVU73173 Hordeum vulgare BARE-1 retrotransposon related-sequence Length = 4198 Score = 60.0 bits (30), Expect = 6e-06 Identities = 117/142 (82%), Gaps = 3/142 (2%) Strand = Plus / Minus Query: 267 tcctatatatcaatcttcgtcac-ggac-tattccagaactcctcgtggcgtccaagatc 324 |||||||||||||||||||| | |||| |||||| ||| ||||||| |||||| |||| Sbjct: 232 tcctatatatcaatcttcgtttccggacctattccggaaaccctcgtgacgtccatgatc 173 Query: 325 tcatctgttactccgaacaacttttattcaccaacacacataactcaactataccaaaac 384 ||||| | | | |||||||| || | |||| |||| ||||||||||||||| ||||| Sbjct: 172 tcatccgggagttcgaacaacattcggtaacca-cacatataactcaactatactaaaac 114 Query: 385 ttcactgaaccttaagtgtgca 406 ||| |||||||||||||||| Sbjct: 113 atcatcgaaccttaagtgtgca 92 Score = 56.0 bits (28), Expect = 9e-05 Identities = 50/56 (89%), Gaps = 1/56 (1%) Strand = Plus / Minus Query: 163 ctccggggtgggt-ggcccctcctggtgaattcccgaaacccattcctcactcccg 217 ||||||||||||| ||||||||| |||||| |||| ||||||||| ||||||||| Sbjct: 336 ctccggggtgggtgggcccctcccggtgaacacccggaacccattcgtcactcccg 281 Score = 50.1 bits (25), Expect = 0.006 Identities = 43/49 (87%) Strand = Plus / Plus Query: 358 acacacataactcaactataccaaaacttcactgaaccttaagtgtgca 406 ||||| |||| |||||||||| ||||| ||| |||||||||||||||| Sbjct: 4059 acacatataaatcaactatactaaaacatcatcgaaccttaagtgtgca 4107
>emb|AJ582561.1|HVU582561 Hordeum vulgare BARE-1 long terminal repeat HvCal-20 mRNA Length = 730 Score = 58.0 bits (29), Expect = 2e-05 Identities = 114/141 (80%), Gaps = 1/141 (0%) Strand = Plus / Minus Query: 267 tcctatatatcaatcttcgtcac-ggactattccagaactcctcgtggcgtccaagatct 325 |||||||||||||| |||||| | |||| ||||| ||| ||||||| ||||| ||||| Sbjct: 173 tcctatatatcaatattcgtctccggaccattccggaaaccctcgtgacgtccgtgatct 114 Query: 326 catctgttactccgaacaacttttattcaccaacacacataactcaactataccaaaact 385 |||| | |||| ||||||| || | ||| ||||| |||| ||||||||| ||||| Sbjct: 113 catccgggactctgaacaacattcggtaacccacacatataagtcaactatagtaaaaca 54 Query: 386 tcactgaaccttaagtgtgca 406 ||| |||||||||||||||| Sbjct: 53 tcatcgaaccttaagtgtgca 33
>emb|AJ582558.1|HVU582558 Hordeum vulgare BARE-1 long terminal repeat HvCal-16 mRNA Length = 744 Score = 58.0 bits (29), Expect = 2e-05 Identities = 44/49 (89%) Strand = Plus / Minus Query: 358 acacacataactcaactataccaaaacttcactgaaccttaagtgtgca 406 ||||| ||||||||||||||| ||||| || | |||||||||||||||| Sbjct: 83 acacatataactcaactatactaaaacatcgccgaaccttaagtgtgca 35 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 267 tcctatatatcaatcttcgt 286 |||||||||||||||||||| Sbjct: 174 tcctatatatcaatcttcgt 155
>emb|AJ582403.1|HVU582403 Hordeum vulgare BARE-1 long terminal repeat Hv-a2 DNA Length = 569 Score = 58.0 bits (29), Expect = 2e-05 Identities = 115/141 (81%), Gaps = 2/141 (1%) Strand = Plus / Minus Query: 267 tcctatatatcaatcttcg-tcacggactattccagaactcctcgtggcgtccaagatct 325 ||||||||||||||||||| | ||||| ||||| ||| ||||||| ||||| ||||| Sbjct: 173 tcctatatatcaatcttcgtttccggaccattccggaaaccctcgtgacgtccgtgatct 114 Query: 326 catctgttactccgaacaacttttattcaccaacacacataactcaactataccaaaact 385 |||| | |||||||||||| || | ||| ||| | ||||||||||||||| ||||| Sbjct: 113 catccgggactccgaacaacattcggtaacc-acatatataactcaactatactaaaaca 55 Query: 386 tcactgaaccttaagtgtgca 406 | | |||||||||||||||| Sbjct: 54 tggccgaaccttaagtgtgca 34 Score = 42.1 bits (21), Expect = 1.4 Identities = 37/41 (90%), Gaps = 1/41 (2%) Strand = Plus / Minus Query: 165 ccggggtgggtggcccctcctggtgaattcccgaaacccat 205 ||||||||||| ||||| || |||||| ||||||||||||| Sbjct: 273 ccggggtgggttgccccccc-ggtgaactcccgaaacccat 234
>gb|AY663391.1| Triticum turgidum cultivar Langdon clone BAC 1156G16, complete sequence Length = 187012 Score = 58.0 bits (29), Expect = 2e-05 Identities = 50/57 (87%) Strand = Plus / Plus Query: 289 cggactattccagaactcctcgtggcgtccaagatctcatctgttactccgaacaac 345 ||||||||||| |||||||||||| ||||| ||||||||| | |||||||||||| Sbjct: 4555 cggactattccggaactcctcgtgacgtccgggatctcatccgggactccgaacaac 4611 Score = 50.1 bits (25), Expect = 0.006 Identities = 49/57 (85%) Strand = Plus / Plus Query: 289 cggactattccagaactcctcgtggcgtccaagatctcatctgttactccgaacaac 345 ||||||||||| |||||||||||| ||| | ||||||||| | |||||||||||| Sbjct: 13087 cggactattccggaactcctcgtgacgttcgggatctcatccgggactccgaacaac 13143
>gb|AF497474.1| Aegilops tauschii leucine-rich-like protein gene, partial cds; seed globulin (Glo-2) gene, complete cds; HMW-glutenin (Glu-Dty) gene, Glu-Dty-T2 allele, complete cds; and HMW-glutenin (HMW) gene, HMW-Dtx2 allele, complete cds Length = 102842 Score = 56.0 bits (28), Expect = 9e-05 Identities = 52/60 (86%) Strand = Plus / Plus Query: 289 cggactattccagaactcctcgtggcgtccaagatctcatctgttactccgaacaacttt 348 ||||| ||||| |||||||||||| ||||| ||||||||| | ||||||||||||||| Sbjct: 91159 cggaccattccggaactcctcgtgacgtccgggatctcatccgggactccgaacaacttt 91218
>gb|DQ249273.1| Hordeum vulgare subsp. vulgare cultivar Morex BAC 631P8, complete sequence Length = 101158 Score = 56.0 bits (28), Expect = 9e-05 Identities = 68/80 (85%), Gaps = 1/80 (1%) Strand = Plus / Plus Query: 267 tcctatatatcaatcttcg-tcacggactattccagaactcctcgtggcgtccaagatct 325 ||||||||||||||||||| | |||||| ||||| ||| ||||||| ||||| ||||| Sbjct: 33794 tcctatatatcaatcttcgtttacggaccattccggaaaccctcgtgacgtccgtgatct 33853 Query: 326 catctgttactccgaacaac 345 |||| | |||||||||||| Sbjct: 33854 catccgggactccgaacaac 33873
>emb|CR626934.1| Triticum aestivum Length = 94398 Score = 56.0 bits (28), Expect = 9e-05 Identities = 52/60 (86%) Strand = Plus / Plus Query: 289 cggactattccagaactcctcgtggcgtccaagatctcatctgttactccgaacaacttt 348 ||||| ||||| |||||||||||| ||||| ||||||||| | ||||||||||||||| Sbjct: 83988 cggaccattccggaactcctcgtgacgtccgggatctcatccgggactccgaacaacttt 84047 Score = 56.0 bits (28), Expect = 9e-05 Identities = 52/60 (86%) Strand = Plus / Minus Query: 289 cggactattccagaactcctcgtggcgtccaagatctcatctgttactccgaacaacttt 348 ||||| ||||| |||||||||||| ||||| ||||||||| | ||||||||||||||| Sbjct: 51060 cggaccattccggaactcctcgtgacgtccgggatctcatccgggactccgaacaacttt 51001 Score = 48.1 bits (24), Expect = 0.022 Identities = 51/60 (85%) Strand = Plus / Plus Query: 289 cggactattccagaactcctcgtggcgtccaagatctcatctgttactccgaacaacttt 348 ||||| ||||| ||||||||||| ||||| ||||||||| | ||||||||||||||| Sbjct: 76944 cggaccattccgaaactcctcgtgacgtccgggatctcatccgggactccgaacaacttt 77003 Score = 48.1 bits (24), Expect = 0.022 Identities = 42/48 (87%) Strand = Plus / Minus Query: 301 gaactcctcgtggcgtccaagatctcatctgttactccgaacaacttt 348 |||||||||||| ||||| ||||||||| | ||||||||||||||| Sbjct: 58095 gaactcctcgtgacgtccgggatctcatccgggactccgaacaacttt 58048
>gb|AY661558.1| Hordeum vulgare subsp. vulgare eIF4E gene locus, complete sequence Length = 439641 Score = 56.0 bits (28), Expect = 9e-05 Identities = 68/80 (85%), Gaps = 1/80 (1%) Strand = Plus / Minus Query: 267 tcctatatatcaatcttcgtcac-ggactattccagaactcctcgtggcgtccaagatct 325 |||||||||||||||||||| | |||||||||| ||| ||||||| ||||| ||||| Sbjct: 55352 tcctatatatcaatcttcgtttccggactattccggaaaccctcgtgacgtccgtgatct 55293 Query: 326 catctgttactccgaacaac 345 |||| | |||||||||||| Sbjct: 55292 catccggaactccgaacaac 55273 Score = 56.0 bits (28), Expect = 9e-05 Identities = 55/64 (85%) Strand = Plus / Plus Query: 171 tgggtggcccctcctggtgaattcccgaaacccattcctcactcccgatactttaccagt 230 |||||||||||||| ||| || |||| |||||||| ||||||||| ||||||||| || Sbjct: 32578 tgggtggcccctcccggtaaaaccccggaacccatttgtcactcccggtactttaccggt 32637 Query: 231 aatg 234 |||| Sbjct: 32638 aatg 32641 Score = 50.1 bits (25), Expect = 0.006 Identities = 46/53 (86%) Strand = Plus / Minus Query: 165 ccggggtgggtggcccctcctggtgaattcccgaaacccattcctcactcccg 217 ||||||||||| ||||| || |||||| ||||| ||||||||| ||| ||||| Sbjct: 380767 ccggggtgggttgccccccccggtgaactcccggaacccattcgtcattcccg 380715 Score = 50.1 bits (25), Expect = 0.006 Identities = 46/53 (86%) Strand = Plus / Minus Query: 165 ccggggtgggtggcccctcctggtgaattcccgaaacccattcctcactcccg 217 ||||||||||| ||||| || |||||| ||||| ||||||||| ||| ||||| Sbjct: 80528 ccggggtgggttgccccccccggtgaactcccggaacccattcgtcattcccg 80476 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Plus Query: 3 gaggagtcctcctccaagtgggtttggtggagg 35 ||||||||||||||||| | ||||||||||||| Sbjct: 32416 gaggagtcctcctccaattcggtttggtggagg 32448 Score = 48.1 bits (24), Expect = 0.022 Identities = 67/80 (83%), Gaps = 1/80 (1%) Strand = Plus / Plus Query: 267 tcctatatatcaatcttcg-tcacggactattccagaactcctcgtggcgtccaagatct 325 ||||||||||||||||||| | ||||| ||||| ||| ||||||| ||||| ||||| Sbjct: 166301 tcctatatatcaatcttcgtttccggaccattcctgaaaccctcgtgacgtccgtgatct 166360 Query: 326 catctgttactccgaacaac 345 |||| | |||||||||||| Sbjct: 166361 catccgggactccgaacaac 166380 Score = 48.1 bits (24), Expect = 0.022 Identities = 67/80 (83%), Gaps = 1/80 (1%) Strand = Plus / Minus Query: 267 tcctatatatcaatcttcg-tcacggactattccagaactcctcgtggcgtccaagatct 325 ||||||||||||||||||| | ||||| ||||| ||| ||||||| ||||| ||||| Sbjct: 80427 tcctatatatcaatcttcgtttccggaccattccggaaaccctcgtgacgtccgtgatct 80368 Query: 326 catctgttactccgaacaac 345 |||| | |||||||||||| Sbjct: 80367 catccgggactccgaacaac 80348 Score = 48.1 bits (24), Expect = 0.022 Identities = 67/80 (83%), Gaps = 1/80 (1%) Strand = Plus / Plus Query: 267 tcctatatatcaatcttcg-tcacggactattccagaactcctcgtggcgtccaagatct 325 ||||||||||||||||||| | ||||| ||||| ||| ||||||| ||||| ||||| Sbjct: 51910 tcctatatatcaatcttcgtttccggacaattccggaaaccctcgtgacgtccgtgatct 51969 Query: 326 catctgttactccgaacaac 345 |||| | |||||||||||| Sbjct: 51970 catccgggactccgaacaac 51989 Score = 44.1 bits (22), Expect = 0.35 Identities = 65/78 (83%), Gaps = 1/78 (1%) Strand = Plus / Plus Query: 267 tcctatatatcaatcttcg-tcacggactattccagaactcctcgtggcgtccaagatct 325 ||||||||||||||||||| | ||||| ||||| ||| ||||||| ||||| ||||| Sbjct: 125806 tcctatatatcaatcttcgtttccggaccattccggaaaccctcgtgacgtccgtgatct 125865 Query: 326 catctgttactccgaaca 343 |||| | |||||||||| Sbjct: 125866 catccgggactccgaaca 125883 Score = 42.1 bits (21), Expect = 1.4 Identities = 64/77 (83%), Gaps = 1/77 (1%) Strand = Plus / Plus Query: 270 tatatatcaatcttcgtcac-ggactattccagaactcctcgtggcgtccaagatctcat 328 ||||||||||||||||| | |||| ||||| ||| ||||||| ||||| |||||||| Sbjct: 90358 tatatatcaatcttcgtttccggaccattccggaaaccctcgtgacgtccctgatctcat 90417 Query: 329 ctgttactccgaacaac 345 | | |||||||||||| Sbjct: 90418 ccgggactccgaacaac 90434 Score = 40.1 bits (20), Expect = 5.4 Identities = 66/80 (82%), Gaps = 1/80 (1%) Strand = Plus / Minus Query: 267 tcctatatatcaatcttcgtcac-ggactattccagaactcctcgtggcgtccaagatct 325 |||||||||||||||||||| | |||| ||| | ||| ||||||| ||||| ||||| Sbjct: 380666 tcctatatatcaatcttcgtttccggaccatttcggaaaccctcgtgacgtccgtgatct 380607 Query: 326 catctgttactccgaacaac 345 |||| | |||||||||||| Sbjct: 380606 catccgggactccgaacaac 380587 Score = 40.1 bits (20), Expect = 5.4 Identities = 66/80 (82%), Gaps = 1/80 (1%) Strand = Plus / Minus Query: 267 tcctatatatcaatcttcgtcac-ggactattccagaactcctcgtggcgtccaagatct 325 |||||||||||||||||||| | |||| |||| ||| ||||||| ||||| ||||| Sbjct: 365479 tcctatatatcaatcttcgtttccggaccattctggaaaccctcgtgacgtccgtgatct 365420 Query: 326 catctgttactccgaacaac 345 |||| | |||||||||||| Sbjct: 365419 catccgggactccgaacaac 365400 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 267 tcctatatatcaatcttcgt 286 |||||||||||||||||||| Sbjct: 119256 tcctatatatcaatcttcgt 119275 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 267 tcctatatatcaatcttcgt 286 |||||||||||||||||||| Sbjct: 87526 tcctatatatcaatcttcgt 87507 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 267 tcctatatatcaatcttcgt 286 |||||||||||||||||||| Sbjct: 57057 tcctatatatcaatcttcgt 57038
>gb|DQ267106.1| Triticum urartu clone BAC 210J24 chromosome 4A, complete sequence Length = 111912 Score = 56.0 bits (28), Expect = 9e-05 Identities = 52/60 (86%) Strand = Plus / Minus Query: 289 cggactattccagaactcctcgtggcgtccaagatctcatctgttactccgaacaacttt 348 ||||| ||||| |||||||||||| ||||| ||||||||| | ||||||||||||||| Sbjct: 20381 cggaccattccggaactcctcgtgacgtccgggatctcatccgggactccgaacaacttt 20322
>emb|Y18785.2|HPUY18785 Hordeum pusillum BARE-1 long terminal repeat DNA (HPUSC) Length = 1902 Score = 56.0 bits (28), Expect = 9e-05 Identities = 116/143 (81%), Gaps = 3/143 (2%) Strand = Plus / Minus Query: 266 ttcctatatatcaatctt--cgtcacggactattccagaactcctcgtggcgtccaagat 323 |||||||||||||||||| | || ||||| ||||| || ||||||||| | || | ||| Sbjct: 993 ttcctatatatcaatctttacctc-cggaccattccggagctcctcgtgacatctaggat 935 Query: 324 ctcatctgttactccgaacaacttttattcaccaacacacataactcaactataccaaaa 383 |||||| | |||||||||||| || |||||| || ||||||| |||||||| ||| Sbjct: 934 ctcatccgggactccgaacaaccttcggtcaccaccattcataactttactataccgaaa 875 Query: 384 cttcactgaaccttaagtgtgca 406 | |||| |||||||||| ||||| Sbjct: 874 cgtcaccgaaccttaagagtgca 852
>gb|AF474982.1| Hordeum vulgare clone BAC 011009, complete sequence Length = 77136 Score = 54.0 bits (27), Expect = 4e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 364 ataactcaactataccaaaacttcactgaaccttaagtgtgca 406 ||||||||||||||| ||||| ||| |||||||||||||||| Sbjct: 66564 ataactcaactatactaaaacatcatcgaaccttaagtgtgca 66606 Score = 42.1 bits (21), Expect = 1.4 Identities = 42/49 (85%) Strand = Plus / Plus Query: 358 acacacataactcaactataccaaaacttcactgaaccttaagtgtgca 406 ||||| ||||||||||||||| ||||| ||| || |||||||||||| Sbjct: 75516 acacatataactcaactatactaaaacatcatcaaaacttaagtgtgca 75564 Score = 42.1 bits (21), Expect = 1.4 Identities = 39/45 (86%) Strand = Plus / Minus Query: 304 ctcctcgtggcgtccaagatctcatctgttactccgaacaacttt 348 ||||||||| ||||| ||||||||| | ||||||||||||||| Sbjct: 38232 ctcctcgtgacgtccgggatctcatccgggactccgaacaacttt 38188 Score = 42.1 bits (21), Expect = 1.4 Identities = 39/45 (86%) Strand = Plus / Minus Query: 304 ctcctcgtggcgtccaagatctcatctgttactccgaacaacttt 348 ||||||||| ||||| ||||||||| | ||||||||||||||| Sbjct: 31203 ctcctcgtgacgtccgggatctcatccgggactccgaacaacttt 31159 Score = 40.1 bits (20), Expect = 5.4 Identities = 66/80 (82%), Gaps = 1/80 (1%) Strand = Plus / Minus Query: 267 tcctatatatcaatcttc-gtcacggactattccagaactcctcgtggcgtccaagatct 325 |||||||||||||||||| | ||||| ||||| ||| ||||||| ||||| ||||| Sbjct: 73932 tcctatatatcaatcttcatttccggaccattccggaaaccctcgtgacgtccgtgatct 73873 Query: 326 catctgttactccgaacaac 345 |||| | |||||||||||| Sbjct: 73872 catccgggactccgaacaac 73853 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 267 tcctatatatcaatcttcgt 286 |||||||||||||||||||| Sbjct: 66467 tcctatatatcaatcttcgt 66486
>emb|Y18784.2|HPUY18784 Hordeum pusillum BARE-1 long terminal repeat DNA (HPUSB) Length = 1792 Score = 54.0 bits (27), Expect = 4e-04 Identities = 69/83 (83%) Strand = Plus / Minus Query: 194 cccgaaacccattcctcactcccgatactttaccagtaatgcccaaaatctttccggaac 253 |||| ||||||||| |||||| || ||| |||| | ||| ||||||| |||||||||| Sbjct: 1063 cccggaacccattcgtcactctcggtacactaccggaaatacccaaaacttttccggaac 1004 Query: 254 ccgaatacctctttcctatatat 276 | |||||| ||||||||||||| Sbjct: 1003 acaaataccactttcctatatat 981
>emb|Y18783.2|HPUY18783 Hordeum pusillum BARE-1 long terminal repeat DNA (HPUSA) Length = 1779 Score = 54.0 bits (27), Expect = 4e-04 Identities = 48/55 (87%) Strand = Plus / Minus Query: 352 tcaccaacacacataactcaactataccaaaacttcactgaaccttaagtgtgca 406 ||||||||| |||||||||||| | || ||| | ||||||||| ||||||||||| Sbjct: 904 tcaccaacatacataactcaacaaaacaaaatcgtcactgaacgttaagtgtgca 850
>emb|Y18771.2|HVUY18771 Hordeum vulgare BARE-1 long terminal repeat DNA (HVULE) Length = 1812 Score = 54.0 bits (27), Expect = 4e-04 Identities = 113/139 (81%), Gaps = 2/139 (1%) Strand = Plus / Minus Query: 269 ctatatatcaatcttcgtcac-ggactattccagaactcctcgtggcgtccaagatctca 327 |||||||| |||||||||| | |||| ||||| ||| |||||||| ||| ||||||| Sbjct: 967 ctatatatgaatcttcgtctccggaccattccggaaatcctcgtgatgtctgtgatctca 908 Query: 328 tctgttactccgaacaacttttattcaccaacacacataactcaactataccaaaacttc 387 || | |||||||||||| || | |||| |||| ||||||||||||||| ||||| || Sbjct: 907 tccgggactccgaacaacattcggtaacca-cacatataactcaactatactaaaacatc 849 Query: 388 actgaaccttaagtgtgca 406 |||||||||||||||| Sbjct: 848 gtcgaaccttaagtgtgca 830
>emb|Y18778.2|HMAY18778 Hordeum marinum BARE-1 long terminal repeat DNA (HMARC) Length = 1888 Score = 52.0 bits (26), Expect = 0.001 Identities = 71/86 (82%) Strand = Plus / Minus Query: 321 gatctcatctgttactccgaacaacttttattcaccaacacacataactcaactatacca 380 ||||||||||| |||||||||||| || |||||| || ||||||||| | |||| Sbjct: 938 gatctcatctgggactccgaacaaccttcggtcaccaccatacataactctccactaccg 879 Query: 381 aaacttcactgaaccttaagtgtgca 406 |||| |||| |||||||||||||||| Sbjct: 878 aaacgtcaccgaaccttaagtgtgca 853
>gb|AY494981.1| Triticum turgidum A genome HMW glutenin A gene locus, sequence Length = 307015 Score = 50.1 bits (25), Expect = 0.006 Identities = 49/57 (85%) Strand = Plus / Minus Query: 289 cggactattccagaactcctcgtggcgtccaagatctcatctgttactccgaacaac 345 ||||| ||||| |||||||||| | |||||| ||||||||| | |||||||||||| Sbjct: 53661 cggaccattccggaactcctcgggacgtccaggatctcatccgggactccgaacaac 53605 Score = 50.1 bits (25), Expect = 0.006 Identities = 49/57 (85%) Strand = Plus / Minus Query: 289 cggactattccagaactcctcgtggcgtccaagatctcatctgttactccgaacaac 345 ||||| ||||| |||||||||||| ||||| ||||||||| | |||||||||||| Sbjct: 40795 cggaccattccggaactcctcgtgacgtccgggatctcatccgggactccgaacaac 40739 Score = 50.1 bits (25), Expect = 0.006 Identities = 37/41 (90%) Strand = Plus / Minus Query: 289 cggactattccagaactcctcgtggcgtccaagatctcatc 329 ||||| ||||| |||||||||||| ||||| |||||||||| Sbjct: 34650 cggaccattccggaactcctcgtgacgtccgagatctcatc 34610 Score = 42.1 bits (21), Expect = 1.4 Identities = 48/57 (84%) Strand = Plus / Minus Query: 289 cggactattccagaactcctcgtggcgtccaagatctcatctgttactccgaacaac 345 ||||| ||||| |||||||||| | ||||| ||||||||| | |||||||||||| Sbjct: 60537 cggaccattccggaactcctcgggacgtccgggatctcatccgggactccgaacaac 60481
>gb|AY368673.1| Triticum turgidum HMW-glutenin locus, complete sequence Length = 285506 Score = 50.1 bits (25), Expect = 0.006 Identities = 49/57 (85%) Strand = Plus / Minus Query: 289 cggactattccagaactcctcgtggcgtccaagatctcatctgttactccgaacaac 345 ||||| ||||| |||||||||||| ||||| ||||||||| | |||||||||||| Sbjct: 165782 cggaccattccggaactcctcgtgacgtccgggatctcatccgggactccgaacaac 165726 Score = 50.1 bits (25), Expect = 0.006 Identities = 49/57 (85%) Strand = Plus / Minus Query: 289 cggactattccagaactcctcgtggcgtccaagatctcatctgttactccgaacaac 345 ||||| ||||| |||||||||||| ||||| ||||||||| | |||||||||||| Sbjct: 158875 cggaccattccggaactcctcgtgacgtccgggatctcatccgggactccgaacaac 158819 Score = 48.1 bits (24), Expect = 0.022 Identities = 51/60 (85%) Strand = Plus / Minus Query: 289 cggactattccagaactcctcgtggcgtccaagatctcatctgttactccgaacaacttt 348 ||||| ||||| |||||||||||| ||| | ||||||||| | ||||||||||||||| Sbjct: 135976 cggaccattccggaactcctcgtgacgttcgggatctcatccgggactccgaacaacttt 135917 Score = 42.1 bits (21), Expect = 1.4 Identities = 39/45 (86%) Strand = Plus / Plus Query: 301 gaactcctcgtggcgtccaagatctcatctgttactccgaacaac 345 ||||||||||| ||||| |||||||||| | |||||||||||| Sbjct: 232541 gaactcctcgtcacgtccgagatctcatccggaactccgaacaac 232585 Score = 42.1 bits (21), Expect = 1.4 Identities = 39/45 (86%) Strand = Plus / Plus Query: 301 gaactcctcgtggcgtccaagatctcatctgttactccgaacaac 345 |||||||||||| ||||| ||||||||| | |||||||||||| Sbjct: 143841 gaactcctcgtgacgtccgggatctcatccgggactccgaacaac 143885 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 115 ccagcccaccaggggctggt 134 |||||||||||||||||||| Sbjct: 136150 ccagcccaccaggggctggt 136131 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 115 ccagcccaccaggggctggt 134 |||||||||||||||||||| Sbjct: 129143 ccagcccaccaggggctggt 129124 Score = 40.1 bits (20), Expect = 5.4 Identities = 50/60 (83%) Strand = Plus / Minus Query: 289 cggactattccagaactcctcgtggcgtccaagatctcatctgttactccgaacaacttt 348 ||||| ||||| |||||||||||| ||| ||||||||| | ||||||||||||||| Sbjct: 128980 cggaccattccggaactcctcgtgatgtctgggatctcatccgggactccgaacaacttt 128921
>emb|AJ582557.1|HVU582557 Hordeum vulgare BARE-1 long terminal repeat HvCal-15 mRNA Length = 754 Score = 50.1 bits (25), Expect = 0.006 Identities = 46/53 (86%) Strand = Plus / Minus Query: 165 ccggggtgggtggcccctcctggtgaattcccgaaacccattcctcactcccg 217 ||||||||||| ||||| || |||||| ||||| ||||||||| ||| ||||| Sbjct: 276 ccggggtgggttgccccccccggtgaactcccggaacccattcgtcattcccg 224 Score = 48.1 bits (24), Expect = 0.022 Identities = 67/80 (83%), Gaps = 1/80 (1%) Strand = Plus / Minus Query: 267 tcctatatatcaatcttcg-tcacggactattccagaactcctcgtggcgtccaagatct 325 ||||||||||||||||||| | ||||| ||||| ||| ||||||| ||||| ||||| Sbjct: 175 tcctatatatcaatcttcgtttccggaccattccggaaaccctcgtgacgtccgtgatct 116 Query: 326 catctgttactccgaacaac 345 |||| | |||||||||||| Sbjct: 115 catccgggactccgaacaac 96
>emb|AJ582530.1|HVU582530 Hordeum vulgare BARE-1 long terminal repeat HvLea-12 mRNA Length = 707 Score = 50.1 bits (25), Expect = 0.006 Identities = 46/53 (86%) Strand = Plus / Minus Query: 165 ccggggtgggtggcccctcctggtgaattcccgaaacccattcctcactcccg 217 ||||||||||||| ||| || |||||| ||||| ||||||||| ||| ||||| Sbjct: 275 ccggggtgggtgggcccccccggtgaactcccggaacccattcgtcattcccg 223 Score = 48.1 bits (24), Expect = 0.022 Identities = 55/64 (85%), Gaps = 1/64 (1%) Strand = Plus / Minus Query: 267 tcctatatatcaatcttcg-tcacggactattccagaactcctcgtggcgtccaagatct 325 ||||||||||||||||||| | ||||| ||||| ||| |||||||| ||||| ||||| Sbjct: 174 tcctatatatcaatcttcgtttccggaccattccggaaatcctcgtgacgtccgtgatct 115 Query: 326 catc 329 |||| Sbjct: 114 catc 111
>emb|X57168.1|TAWIS21AI T.aestivum Wis-2-1A retrotransposon-like element Length = 1755 Score = 50.1 bits (25), Expect = 0.006 Identities = 49/57 (85%) Strand = Plus / Minus Query: 289 cggactattccagaactcctcgtggcgtccaagatctcatctgttactccgaacaac 345 ||||| ||||| |||||||||| | |||||| ||||||||| | |||||||||||| Sbjct: 960 cggaccattccggaactcctcgggacgtccaggatctcatccgggactccgaacaac 904
>gb|AY951944.1| Triticum monococcum TmBAC 21C6 FR-Am2 locus, genomic sequence Length = 190469 Score = 50.1 bits (25), Expect = 0.006 Identities = 49/57 (85%) Strand = Plus / Minus Query: 289 cggactattccagaactcctcgtggcgtccaagatctcatctgttactccgaacaac 345 ||||| ||||| |||||||||||| ||||| ||||||||| | |||||||||||| Sbjct: 42840 cggaccattccggaactcctcgtgacgtccgggatctcatccgggactccgaacaac 42784 Score = 40.1 bits (20), Expect = 5.4 Identities = 69/84 (82%), Gaps = 1/84 (1%) Strand = Plus / Minus Query: 266 ttcctatatatcaatcttcgtc-acggactattccagaactcctcgtggcgtccaagatc 324 ||||||||||| ||||||| | ||||| ||||| |||||||||||| ||| | |||| Sbjct: 161227 ttcctatatataaatcttcacctccggaccattccggaactcctcgtgacgttcgggatc 161168 Query: 325 tcatctgttactccgaacaacttt 348 ||| | | ||||||||||||||| Sbjct: 161167 tcacccgggactccgaacaacttt 161144 Score = 40.1 bits (20), Expect = 5.4 Identities = 35/40 (87%) Strand = Plus / Minus Query: 290 ggactattccagaactcctcgtggcgtccaagatctcatc 329 |||| ||||| |||||||||||| ||||| ||||||||| Sbjct: 49799 ggaccattccggaactcctcgtgacgtccgggatctcatc 49760
>gb|AY641410.1| Hordeum vulgare subsp. vulgare retrotransposons Sandra3 and Sandra4, complete sequence Length = 7056 Score = 50.1 bits (25), Expect = 0.006 Identities = 52/61 (85%) Strand = Plus / Plus Query: 289 cggactattccagaactcctcgtggcgtccaagatctcatctgttactccgaacaacttt 348 ||||| ||||| || ||||||||| ||||| ||||||||| | ||||||||||||||| Sbjct: 4520 cggaccattccggagctcctcgtgacgtcctggatctcatccgggactccgaacaacttt 4579 Query: 349 t 349 | Sbjct: 4580 t 4580
>gb|AF339051.1| Triticum monococcum WIS-2-1A Ty1-copia-like retrotransposon, complete sequence Length = 9682 Score = 50.1 bits (25), Expect = 0.006 Identities = 49/57 (85%) Strand = Plus / Minus Query: 289 cggactattccagaactcctcgtggcgtccaagatctcatctgttactccgaacaac 345 ||||| ||||| |||||||||||| ||||| ||||||||| | |||||||||||| Sbjct: 1671 cggaccattccggaactcctcgtgacgtccgggatctcatccgggactccgaacaac 1615 Score = 42.1 bits (21), Expect = 1.4 Identities = 48/57 (84%) Strand = Plus / Minus Query: 289 cggactattccagaactcctcgtggcgtccaagatctcatctgttactccgaacaac 345 ||||| ||||| ||||||||||| ||||| ||||||||| | |||||||||||| Sbjct: 8624 cggaccattccggaactcctcgtaacgtccgggatctcatccgggactccgaacaac 8568
>gb|AY643844.1|AY643842S3 Hordeum vulgare subsp. vulgare clones BAC 799C8 and 122A5 hardness locus region Length = 160897 Score = 48.1 bits (24), Expect = 0.022 Identities = 67/80 (83%), Gaps = 1/80 (1%) Strand = Plus / Plus Query: 267 tcctatatatcaatcttcg-tcacggactattccagaactcctcgtggcgtccaagatct 325 ||||||||||||||||||| | ||||| ||||| ||| ||||||| ||||| ||||| Sbjct: 156695 tcctatatatcaatcttcgtttccggaccattccggaaaccctcgtgacgtccgtgatct 156754 Query: 326 catctgttactccgaacaac 345 |||| | |||||||||||| Sbjct: 156755 catccgggactccgaacaac 156774 Score = 48.1 bits (24), Expect = 0.022 Identities = 67/80 (83%), Gaps = 1/80 (1%) Strand = Plus / Plus Query: 267 tcctatatatcaatcttcgtcac-ggactattccagaactcctcgtggcgtccaagatct 325 |||||||||||||||||||| | |||| |||| ||| ||||||| |||||| ||||| Sbjct: 143196 tcctatatatcaatcttcgtttccggaccattcgggaaaccctcgtgacgtccatgatct 143255 Query: 326 catctgttactccgaacaac 345 |||| | |||||||||||| Sbjct: 143256 catccgggactccgaacaac 143275 Score = 48.1 bits (24), Expect = 0.022 Identities = 67/80 (83%), Gaps = 1/80 (1%) Strand = Plus / Minus Query: 267 tcctatatatcaatcttcg-tcacggactattccagaactcctcgtggcgtccaagatct 325 ||||||||||||||||||| | ||||| ||||| ||| ||||||| ||||| ||||| Sbjct: 108413 tcctatatatcaatcttcgtttccggaccattccggaaaccctcgtgacgtccgtgatct 108354 Query: 326 catctgttactccgaacaac 345 |||| | |||||||||||| Sbjct: 108353 catccgggactccgaacaac 108334 Score = 48.1 bits (24), Expect = 0.022 Identities = 67/80 (83%), Gaps = 1/80 (1%) Strand = Plus / Minus Query: 267 tcctatatatcaatcttcg-tcacggactattccagaactcctcgtggcgtccaagatct 325 ||||||||||||||||||| | ||||| ||||| ||| |||||| ||||| ||||| Sbjct: 75648 tcctatatatcaatcttcgtttccggaccattccggaaaccctcgtcacgtccgtgatct 75589 Query: 326 catctgttactccgaacaac 345 |||||| |||||||||||| Sbjct: 75588 catctgggactccgaacaac 75569 Score = 48.1 bits (24), Expect = 0.022 Identities = 67/80 (83%), Gaps = 1/80 (1%) Strand = Plus / Minus Query: 267 tcctatatatcaatcttcgtcac-ggactattccagaactcctcgtggcgtccaagatct 325 |||||||||||||| ||||| | |||| ||||| ||| ||||||| ||||| ||||| Sbjct: 68540 tcctatatatcaatattcgtttccggaccattccggaaaccctcgtgacgtccgtgatct 68481 Query: 326 catctgttactccgaacaac 345 |||||| |||||||||||| Sbjct: 68480 catctgggactccgaacaac 68461 Score = 48.1 bits (24), Expect = 0.022 Identities = 67/80 (83%), Gaps = 1/80 (1%) Strand = Plus / Plus Query: 267 tcctatatatcaatcttcg-tcacggactattccagaactcctcgtggcgtccaagatct 325 ||||||||||||||||||| | ||||| ||||| ||| ||||||| ||||| ||||| Sbjct: 36319 tcctatatatcaatcttcgtttccggaccattccggaaaccctcgtgacgtccgtgatct 36378 Query: 326 catctgttactccgaacaac 345 |||| | |||||||||||| Sbjct: 36379 catccgggactccgaacaac 36398 Score = 42.1 bits (21), Expect = 1.4 Identities = 45/53 (84%) Strand = Plus / Plus Query: 165 ccggggtgggtggcccctcctggtgaattcccgaaacccattcctcactcccg 217 ||||||||||||| ||| || |||||| ||||| |||| |||| ||| ||||| Sbjct: 144255 ccggggtgggtgggcccccccggtgaactcccggaacctattcgtcattcccg 144307 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 266 ttcctatatatcaatcttcgt 286 ||||||||||||||||||||| Sbjct: 41167 ttcctatatatcaatcttcgt 41187 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 267 tcctatatatcaatcttcgt 286 |||||||||||||||||||| Sbjct: 136303 tcctatatatcaatcttcgt 136322 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 267 tcctatatatcaatcttcgt 286 |||||||||||||||||||| Sbjct: 101282 tcctatatatcaatcttcgt 101263 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 267 tcctatatatcaatcttcgt 286 |||||||||||||||||||| Sbjct: 27835 tcctatatatcaatcttcgt 27854 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 267 tcctatatatcaatcttcgt 286 |||||||||||||||||||| Sbjct: 22347 tcctatatatcaatcttcgt 22366 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 267 tcctatatatcaatcttcgt 286 |||||||||||||||||||| Sbjct: 19061 tcctatatatcaatcttcgt 19080
>gb|AF474373.1| Hordeum vulgare subsp. vulgare BAC 259I16, complete sequence Length = 124050 Score = 48.1 bits (24), Expect = 0.022 Identities = 67/80 (83%), Gaps = 1/80 (1%) Strand = Plus / Minus Query: 267 tcctatatatcaatcttcg-tcacggactattccagaactcctcgtggcgtccaagatct 325 ||||||||||||||||||| | ||||| ||||| ||| ||||||| ||||| ||||| Sbjct: 122236 tcctatatatcaatcttcgtttccggaccattccggaaaccctcgtgacgtccgtgatct 122177 Query: 326 catctgttactccgaacaac 345 |||| | |||||||||||| Sbjct: 122176 catccgggactccgaacaac 122157 Score = 48.1 bits (24), Expect = 0.022 Identities = 67/80 (83%), Gaps = 1/80 (1%) Strand = Plus / Minus Query: 267 tcctatatatcaatcttcg-tcacggactattccagaactcctcgtggcgtccaagatct 325 ||||||||||||||||||| | ||||| ||||| ||| ||||||| ||||| ||||| Sbjct: 36654 tcctatatatcaatcttcgtttccggaccattccggaaaccctcgtgacgtccgtgatct 36595 Query: 326 catctgttactccgaacaac 345 |||| | |||||||||||| Sbjct: 36594 catccgggactccgaacaac 36575 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 267 tcctatatatcaatcttcgt 286 |||||||||||||||||||| Sbjct: 102180 tcctatatatcaatcttcgt 102199 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 267 tcctatatatcaatcttcgt 286 |||||||||||||||||||| Sbjct: 38027 tcctatatatcaatcttcgt 38046
>gb|AY485643.1| Hordeum vulgare subsp. vulgare BAC 615K1, complete sequence Length = 114996 Score = 48.1 bits (24), Expect = 0.022 Identities = 67/80 (83%), Gaps = 1/80 (1%) Strand = Plus / Minus Query: 267 tcctatatatcaatcttcg-tcacggactattccagaactcctcgtggcgtccaagatct 325 ||||||||||||||||||| | ||||||||||||||| |||| | ||||| ||||| Sbjct: 22189 tcctatatatcaatcttcgtttccggactattccagaaaccctcataacgtccgtgatct 22130 Query: 326 catctgttactccgaacaac 345 |||| | |||||||||||| Sbjct: 22129 catccgggactccgaacaac 22110 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 267 tcctatatatcaatcttcgt 286 |||||||||||||||||||| Sbjct: 57429 tcctatatatcaatcttcgt 57448 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 267 tcctatatatcaatcttcgt 286 |||||||||||||||||||| Sbjct: 31404 tcctatatatcaatcttcgt 31423 Score = 40.1 bits (20), Expect = 5.4 Identities = 66/80 (82%), Gaps = 1/80 (1%) Strand = Plus / Minus Query: 267 tcctatatatcaatcttcgtcac-ggactattccagaactcctcgtggcgtccaagatct 325 |||||||||||||||||| | | |||||||||||||| |||| | ||||| ||||| Sbjct: 15081 tcctatatatcaatcttcatttctggactattccagaaaccctcataacgtccgtgatct 15022 Query: 326 catctgttactccgaacaac 345 |||| | |||||||||||| Sbjct: 15021 catccgggactccgaacaac 15002
>gb|AY534123.1|SEG_AY534122S2 Aegilops tauschii transposons Caspar, XJ, Angela, and XJ, complete sequence; LRR protein WM1.7 (WM1.7) and LRR protein WM1.12 (WM1.12) genes, complete cds; transposons Ophelia2, Angela3s, and XJ3, complete sequence; LRR protein WM1.3 (WM1.3) gene, complete cds; Stowaway MITE, transposons XJ1, Jody, Angela, and XJ and Stowaway MITE, complete sequence; LRR protein WM1.2 (WM1.2) and LLR protein WM1.1 (WM1.1) genes, complete cds; transposons XJ, XA, Angela, and Fred and WM1.11 gene, complete sequence; RPM1-like sequence and LRR protein WM1.10 (WM1.10) genes, complete cds; and transposon XJ, complete sequence Length = 198649 Score = 48.1 bits (24), Expect = 0.022 Identities = 51/60 (85%) Strand = Plus / Plus Query: 289 cggactattccagaactcctcgtggcgtccaagatctcatctgttactccgaacaacttt 348 ||||| |||||||||| |||||| ||||| ||||||||| | ||||||||||||||| Sbjct: 93782 cggaccattccagaacctctcgtgacgtccgggatctcatccgggactccgaacaacttt 93841 Score = 48.1 bits (24), Expect = 0.022 Identities = 51/60 (85%) Strand = Plus / Plus Query: 289 cggactattccagaactcctcgtggcgtccaagatctcatctgttactccgaacaacttt 348 ||||| |||||||||| |||||| ||||| ||||||||| | ||||||||||||||| Sbjct: 86737 cggaccattccagaacctctcgtgacgtccgggatctcatccgggactccgaacaacttt 86796 Score = 40.1 bits (20), Expect = 5.4 Identities = 50/60 (83%) Strand = Plus / Minus Query: 289 cggactattccagaactcctcgtggcgtccaagatctcatctgttactccgaacaacttt 348 ||||| ||||| |||| |||||| ||||| ||||||||| | ||||||||||||||| Sbjct: 11479 cggaccattccggaacctctcgtgacgtccgggatctcatccgggactccgaacaacttt 11420 Score = 40.1 bits (20), Expect = 5.4 Identities = 50/60 (83%) Strand = Plus / Minus Query: 289 cggactattccagaactcctcgtggcgtccaagatctcatctgttactccgaacaacttt 348 ||||| ||||| |||| |||||| ||||| ||||||||| | ||||||||||||||| Sbjct: 4592 cggaccattccggaacctctcgtgacgtccgggatctcatccgggactccgaacaacttt 4533
>gb|AF521177.1| Hordeum vulgare contig 211252, complete sequence Length = 211664 Score = 48.1 bits (24), Expect = 0.022 Identities = 67/80 (83%), Gaps = 1/80 (1%) Strand = Plus / Plus Query: 267 tcctatatatcaatcttcg-tcacggactattccagaactcctcgtggcgtccaagatct 325 ||||||||||||||||||| | ||||| ||||| ||| ||||||| ||||| ||||| Sbjct: 102569 tcctatatatcaatcttcgtttccggaccattccggaaaccctcgtgacgtccgtgatct 102628 Query: 326 catctgttactccgaacaac 345 |||| | |||||||||||| Sbjct: 102629 catccgggactccgaacaac 102648 Score = 48.1 bits (24), Expect = 0.022 Identities = 67/80 (83%), Gaps = 1/80 (1%) Strand = Plus / Plus Query: 267 tcctatatatcaatcttcg-tcacggactattccagaactcctcgtggcgtccaagatct 325 ||||||||||||||||||| | ||||| ||||| ||| ||||||| ||||| ||||| Sbjct: 95773 tcctatatatcaatcttcgtttccggaccattccggaaaccctcgtgacgtccgtgatct 95832 Query: 326 catctgttactccgaacaac 345 |||| | |||||||||||| Sbjct: 95833 catccgggactccgaacaac 95852 Score = 42.1 bits (21), Expect = 1.4 Identities = 45/53 (84%) Strand = Plus / Plus Query: 165 ccggggtgggtggcccctcctggtgaattcccgaaacccattcctcactcccg 217 ||||||||||| ||||| | |||||| ||||| ||||||||| ||| ||||| Sbjct: 144337 ccggggtgggttgcccccctcggtgaactcccggaacccattcgtcattcccg 144389 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 267 tcctatatatcaatcttcgt 286 |||||||||||||||||||| Sbjct: 144438 tcctatatatcaatcttcgt 144457
>gb|AF474072.1| Hordeum vulgare sp. vulgare cultivar Morex BAC clone 773k14, complete sequence Length = 113510 Score = 48.1 bits (24), Expect = 0.022 Identities = 67/80 (83%), Gaps = 1/80 (1%) Strand = Plus / Plus Query: 267 tcctatatatcaatcttcg-tcacggactattccagaactcctcgtggcgtccaagatct 325 ||||||||||||||||||| | ||||| ||||| ||| ||||||| ||||| ||||| Sbjct: 66590 tcctatatatcaatcttcgtttccggaccattccggaaaccctcgtgacgtccgtgatct 66649 Query: 326 catctgttactccgaacaac 345 |||| | |||||||||||| Sbjct: 66650 catccgggactccgaacaac 66669 Score = 40.1 bits (20), Expect = 5.4 Identities = 66/80 (82%), Gaps = 1/80 (1%) Strand = Plus / Plus Query: 267 tcctatatatcaatcttcgtc-acggactattccagaactcctcgtggcgtccaagatct 325 |||||||||||||| |||||| ||||| | ||||||| ||||||| ||||| |||| Sbjct: 108551 tcctatatatcaatgttcgtctccggaccactccagaaaccctcgtgacgtccgtgatcc 108610 Query: 326 catctgttactccgaacaac 345 |||| | |||||||||||| Sbjct: 108611 catccgggactccgaacaac 108630 Score = 40.1 bits (20), Expect = 5.4 Identities = 66/80 (82%), Gaps = 1/80 (1%) Strand = Plus / Plus Query: 267 tcctatatatcaatcttcgtcac-ggactattccagaactcctcgtggcgtccaagatct 325 |||||||||||||| ||||| | |||| ||||| ||| ||||||| ||||| ||||| Sbjct: 73379 tcctatatatcaatattcgtttctggaccattccggaaaccctcgtgacgtccgtgatct 73438 Query: 326 catctgttactccgaacaac 345 |||| | |||||||||||| Sbjct: 73439 catccgggactccgaacaac 73458
>gb|AY146588.1| Triticum monococcum BAC clone 453N11, complete sequence Length = 285444 Score = 48.1 bits (24), Expect = 0.022 Identities = 48/56 (85%) Strand = Plus / Minus Query: 289 cggactattccagaactcctcgtggcgtccaagatctcatctgttactccgaacaa 344 ||||| ||||| |||||||||||| ||||| ||||||||| | ||||||||||| Sbjct: 159044 cggaccattccggaactcctcgtgacgtccgggatctcatccgggactccgaacaa 158989 Score = 42.1 bits (21), Expect = 1.4 Identities = 36/41 (87%) Strand = Plus / Minus Query: 289 cggactattccagaactcctcgtggcgtccaagatctcatc 329 ||||| ||||| |||||||||||| ||||| ||||||||| Sbjct: 84158 cggaccattccggaactcctcgtgacgtccgggatctcatc 84118 Score = 42.1 bits (21), Expect = 1.4 Identities = 36/41 (87%) Strand = Plus / Minus Query: 289 cggactattccagaactcctcgtggcgtccaagatctcatc 329 ||||| ||||| |||||||||||| ||||| ||||||||| Sbjct: 77143 cggaccattccggaactcctcgtgacgtccgggatctcatc 77103
>emb|AJ582559.1|HVU582559 Hordeum vulgare BARE-1 long terminal repeat HvCal-17 mRNA Length = 748 Score = 48.1 bits (24), Expect = 0.022 Identities = 67/80 (83%), Gaps = 1/80 (1%) Strand = Plus / Minus Query: 267 tcctatatatcaatcttcg-tcacggactattccagaactcctcgtggcgtccaagatct 325 ||||||||||||||||||| | ||||| ||||| ||| ||||||| ||||| ||||| Sbjct: 175 tcctatatatcaatcttcgtttccggaccattccggaaaccctcgtgacgtccgtgatct 116 Query: 326 catctgttactccgaacaac 345 |||| | |||||||||||| Sbjct: 115 catccgggactccgaacaac 96
>emb|AJ582554.1|HVU582554 Hordeum vulgare BARE-1 long terminal repeat HvCal-12 mRNA Length = 754 Score = 48.1 bits (24), Expect = 0.022 Identities = 67/80 (83%), Gaps = 1/80 (1%) Strand = Plus / Minus Query: 267 tcctatatatcaatcttcgtcac-ggactattccagaactcctcgtggcgtccaagatct 325 |||||||||||||||||||| | |||| ||||| ||| ||||||| ||||| ||||| Sbjct: 174 tcctatatatcaatcttcgtttctggaccattccggaaaccctcgtgacgtccttgatct 115 Query: 326 catctgttactccgaacaac 345 |||| | |||||||||||| Sbjct: 114 catccgggactccgaacaac 95
>emb|AJ582553.1|HVU582553 Hordeum vulgare BARE-1 long terminal repeat HvCal-11 mRNA Length = 760 Score = 48.1 bits (24), Expect = 0.022 Identities = 67/80 (83%), Gaps = 1/80 (1%) Strand = Plus / Minus Query: 267 tcctatatatcaatcttcg-tcacggactattccagaactcctcgtggcgtccaagatct 325 ||||||||||||||||||| | ||||| ||||| ||| ||||||| ||||| ||||| Sbjct: 174 tcctatatatcaatcttcgtttccggaccattccggaaaccctcgtgacgtccgtgatct 115 Query: 326 catctgttactccgaacaac 345 |||| | |||||||||||| Sbjct: 114 catccgggactccgaacaac 95
>emb|AJ582550.1|HVU582550 Hordeum vulgare BARE-1 long terminal repeat HvCal-7 mRNA Length = 745 Score = 48.1 bits (24), Expect = 0.022 Identities = 67/80 (83%), Gaps = 1/80 (1%) Strand = Plus / Minus Query: 267 tcctatatatcaatcttcg-tcacggactattccagaactcctcgtggcgtccaagatct 325 ||||||||||||||||||| | ||||| ||||| ||| ||||||| ||||| ||||| Sbjct: 175 tcctatatatcaatcttcgtttccggaccattccggaaaccctcgtgacgtccgtgatct 116 Query: 326 catctgttactccgaacaac 345 |||| | |||||||||||| Sbjct: 115 catccgggactccgaacaac 96
>emb|AJ582548.1|HVU582548 Hordeum vulgare BARE-1 long terminal repeat HvCal-5 mRNA Length = 740 Score = 48.1 bits (24), Expect = 0.022 Identities = 67/80 (83%), Gaps = 1/80 (1%) Strand = Plus / Minus Query: 267 tcctatatatcaatcttcg-tcacggactattccagaactcctcgtggcgtccaagatct 325 ||||||||||||||||||| | ||||| ||||| ||| ||||||| ||||| ||||| Sbjct: 173 tcctatatatcaatcttcgtttccggaccattccggaaaccctcgtgacgtccgtgatct 114 Query: 326 catctgttactccgaacaac 345 |||| | |||||||||||| Sbjct: 113 catccgggactccgaacaac 94
>emb|AJ582544.1|HVU582544 Hordeum vulgare BARE-1 long terminal repeat HvCal-1 mRNA Length = 750 Score = 48.1 bits (24), Expect = 0.022 Identities = 67/80 (83%), Gaps = 1/80 (1%) Strand = Plus / Minus Query: 267 tcctatatatcaatcttcg-tcacggactattccagaactcctcgtggcgtccaagatct 325 ||||||||||||||||||| | ||||| ||||| ||| ||||||| ||||| ||||| Sbjct: 174 tcctatatatcaatcttcgtttccggaccattccggaaaccctcgtgacgtccgtgatct 115 Query: 326 catctgttactccgaacaac 345 |||| | |||||||||||| Sbjct: 114 catccgggactccgaacaac 95
>emb|AJ582543.1|HVU582543 Hordeum vulgare BARE-1 long terminal repeat HvLea-32 mRNA Length = 748 Score = 48.1 bits (24), Expect = 0.022 Identities = 67/80 (83%), Gaps = 1/80 (1%) Strand = Plus / Minus Query: 267 tcctatatatcaatcttcg-tcacggactattccagaactcctcgtggcgtccaagatct 325 ||||||||||||||||||| | ||||| ||||| ||| ||||||| ||||| ||||| Sbjct: 175 tcctatatatcaatcttcgtttccggaccattccggaaaccctcgtgacgtccgtgatct 116 Query: 326 catctgttactccgaacaac 345 |||| | |||||||||||| Sbjct: 115 catccgggactccgaacaac 96
>emb|AJ582542.1|HVU582542 Hordeum vulgare BARE-1 long terminal repeat HvLea-31 mRNA Length = 746 Score = 48.1 bits (24), Expect = 0.022 Identities = 67/80 (83%), Gaps = 1/80 (1%) Strand = Plus / Minus Query: 267 tcctatatatcaatcttcg-tcacggactattccagaactcctcgtggcgtccaagatct 325 ||||||||||||||||||| | ||||| ||||| ||| ||||||| ||||| ||||| Sbjct: 174 tcctatatatcaatcttcgtttccggaccattccggaaaccctcgtgacgtccgtgatct 115 Query: 326 catctgttactccgaacaac 345 |||| | |||||||||||| Sbjct: 114 catccgggactccgaacaac 95
>emb|AJ582540.1|HVU582540 Hordeum vulgare BARE-1 long terminal repeat HvLea-29 mRNA Length = 757 Score = 48.1 bits (24), Expect = 0.022 Identities = 67/80 (83%), Gaps = 1/80 (1%) Strand = Plus / Minus Query: 267 tcctatatatcaatcttcg-tcacggactattccagaactcctcgtggcgtccaagatct 325 ||||||||||||||||||| | ||||| ||||| ||| ||||||| ||||| ||||| Sbjct: 175 tcctatatatcaatcttcgtttccggaccattccggaaaccctcgtgacgtccgtgatct 116 Query: 326 catctgttactccgaacaac 345 |||| | |||||||||||| Sbjct: 115 catccgggactccgaacaac 96 Score = 42.1 bits (21), Expect = 1.4 Identities = 45/53 (84%) Strand = Plus / Minus Query: 165 ccggggtgggtggcccctcctggtgaattcccgaaacccattcctcactcccg 217 ||||||||||| ||||| || |||||| ||| | ||||||||| ||| ||||| Sbjct: 276 ccggggtgggttgccccccccggtgaactccaggaacccattcgtcattcccg 224
>emb|AJ582534.1|HVU582534 Hordeum vulgare BARE-1 long terminal repeat HvLea-21 mRNA Length = 731 Score = 48.1 bits (24), Expect = 0.022 Identities = 67/80 (83%), Gaps = 1/80 (1%) Strand = Plus / Minus Query: 267 tcctatatatcaatcttcg-tcacggactattccagaactcctcgtggcgtccaagatct 325 ||||||||||||||||||| | ||||| ||||| ||| ||||||| ||||| ||||| Sbjct: 174 tcctatatatcaatcttcgtttccggaccattccggaaaccctcgtgacgtccgtgatct 115 Query: 326 catctgttactccgaacaac 345 |||| | |||||||||||| Sbjct: 114 catccgggactccgaacaac 95
>emb|AJ582531.1|HVU582531 Hordeum vulgare BARE-1 long terminal repeat HvLea-15 mRNA Length = 732 Score = 48.1 bits (24), Expect = 0.022 Identities = 67/80 (83%), Gaps = 1/80 (1%) Strand = Plus / Minus Query: 267 tcctatatatcaatcttcg-tcacggactattccagaactcctcgtggcgtccaagatct 325 ||||||||||||||||||| | ||||| ||||| ||| ||||||| ||||| ||||| Sbjct: 174 tcctatatatcaatcttcgtttccggaccattccggaaaccctcgtgacgtccgtgatct 115 Query: 326 catctgttactccgaacaac 345 |||| | |||||||||||| Sbjct: 114 catccgggactccgaacaac 95
>emb|AJ582529.1|HVU582529 Hordeum vulgare BARE-1 long terminal repeat HvLea-9 mRNA Length = 746 Score = 48.1 bits (24), Expect = 0.022 Identities = 67/80 (83%), Gaps = 1/80 (1%) Strand = Plus / Minus Query: 267 tcctatatatcaatcttcg-tcacggactattccagaactcctcgtggcgtccaagatct 325 ||||||||||||||||||| | ||||| ||||| ||| ||||||| ||||| ||||| Sbjct: 174 tcctatatatcaatcttcgtttccggaccattccggaaaccctcgtgacgtccgtgatct 115 Query: 326 catctgttactccgaacaac 345 |||| | |||||||||||| Sbjct: 114 catccgggactccgaacaac 95
>gb|AF427791.1| Hordeum vulgare Mla locus, complete sequence Length = 261265 Score = 48.1 bits (24), Expect = 0.022 Identities = 67/80 (83%), Gaps = 1/80 (1%) Strand = Plus / Plus Query: 267 tcctatatatcaatcttcgtcac-ggactattccagaactcctcgtggcgtccaagatct 325 ||||||||||||| |||||| | |||||||||| ||| ||||||| ||||| ||||| Sbjct: 237005 tcctatatatcaaccttcgtttccggactattccggaaaccctcgtgacgtccgtgatct 237064 Query: 326 catctgttactccgaacaac 345 |||| | |||||||||||| Sbjct: 237065 catccgggactccgaacaac 237084 Score = 48.1 bits (24), Expect = 0.022 Identities = 67/80 (83%), Gaps = 1/80 (1%) Strand = Plus / Plus Query: 267 tcctatatatcaatcttcg-tcacggactattccagaactcctcgtggcgtccaagatct 325 ||||||||||||||||||| | ||||||||||| ||| ||||||| ||| | ||||| Sbjct: 231151 tcctatatatcaatcttcgtttccggactattccggaaaccctcgtgacgttcgtgatct 231210 Query: 326 catctgttactccgaacaac 345 |||| | |||||||||||| Sbjct: 231211 catccgggactccgaacaac 231230 Score = 46.1 bits (23), Expect = 0.088 Identities = 69/82 (84%), Gaps = 3/82 (3%) Strand = Plus / Minus Query: 266 ttcctatatatcaatctt--cgtcacggactattccagaactcctcgtggcgtccaagat 323 |||||||||||||||||| | || ||||| ||||| || ||||||||| ||||| ||| Sbjct: 243554 ttcctatatatcaatctttacctc-cggaccattccggagctcctcgtgacgtcctggat 243496 Query: 324 ctcatctgttactccgaacaac 345 |||||| | |||||||||||| Sbjct: 243495 ctcatccgagactccgaacaac 243474 Score = 42.1 bits (21), Expect = 1.4 Identities = 70/84 (83%), Gaps = 3/84 (3%) Strand = Plus / Plus Query: 267 tcctatatatcaatctt--cgtcacggactattccagaactcctcgtggcgtccaagatc 324 ||||||||||||||||| | || ||||| ||||| || ||||||||| |||| |||| Sbjct: 174654 tcctatatatcaatctttacctc-cggaccattccggagctcctcgtgatgtccgggatc 174712 Query: 325 tcatctgttactccgaacaacttt 348 ||||| | ||||||||||||||| Sbjct: 174713 tcatccgggactccgaacaacttt 174736 Score = 42.1 bits (21), Expect = 1.4 Identities = 70/84 (83%), Gaps = 3/84 (3%) Strand = Plus / Plus Query: 267 tcctatatatcaatctt--cgtcacggactattccagaactcctcgtggcgtccaagatc 324 ||||||||||||||||| | || ||||| ||||| || ||||||||| ||||| ||| Sbjct: 159206 tcctatatatcaatctttacctc-cggaccattccggagctcctcgtgacgtccgggata 159264 Query: 325 tcatctgttactccgaacaacttt 348 ||||| | ||||||||||||||| Sbjct: 159265 tcatccgggactccgaacaacttt 159288 Score = 42.1 bits (21), Expect = 1.4 Identities = 48/57 (84%) Strand = Plus / Minus Query: 289 cggactattccagaactcctcgtggcgtccaagatctcatctgttactccgaacaac 345 ||||| ||||||||| ||||||| ||||| ||||||||| | |||||||||||| Sbjct: 145726 cggaccattccagaaaccctcgtgacgtccgtgatctcatccgggactccgaacaac 145670 Score = 40.1 bits (20), Expect = 5.4 Identities = 66/80 (82%), Gaps = 1/80 (1%) Strand = Plus / Minus Query: 267 tcctatatatcaatcttcg-tcacggactattccagaactcctcgtggcgtccaagatct 325 ||||||||||||||||| | | ||||| ||||| ||| ||||||| ||||| ||||| Sbjct: 188329 tcctatatatcaatctttgtttccggaccattccggaaaccctcgtgacgtccgtgatct 188270 Query: 326 catctgttactccgaacaac 345 |||| | |||||||||||| Sbjct: 188269 catccgggactccgaacaac 188250 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 267 tcctatatatcaatcttcgt 286 |||||||||||||||||||| Sbjct: 173485 tcctatatatcaatcttcgt 173504
>gb|AY641412.1| Hordeum vulgare subsp. vulgare retrotransposon Sandra5, complete sequence; splicing factor SF2-like protein (SF2) and universal stress protein (USP1) genes and Hv receptor-kinase-like pseudogene, complete cds; and retrotransposons Sandra6 and Sandra7, complete sequence Length = 82293 Score = 48.1 bits (24), Expect = 0.022 Identities = 67/80 (83%), Gaps = 1/80 (1%) Strand = Plus / Plus Query: 267 tcctatatatcaatcttcg-tcacggactattccagaactcctcgtggcgtccaagatct 325 ||||||||||||||||||| | ||||| ||||| ||| ||||||| ||||| ||||| Sbjct: 66194 tcctatatatcaatcttcgtttccggaccattccggaaaccctcgtgacgtccgtgatct 66253 Query: 326 catctgttactccgaacaac 345 |||| | |||||||||||| Sbjct: 66254 catccgggactccgaacaac 66273
>gb|AF254799.1|AF254799 Hordeum vulgare tonoplast intrinsic protein 1 (TIP1), tonoplast intrinsic protein 2 (TIP2), and Rar1 (Rar1) genes, complete cds Length = 65979 Score = 48.1 bits (24), Expect = 0.022 Identities = 67/80 (83%), Gaps = 1/80 (1%) Strand = Plus / Minus Query: 267 tcctatatatcaatcttcg-tcacggactattccagaactcctcgtggcgtccaagatct 325 ||||||||||||||||||| | ||||| ||||| ||| ||||||| ||||| ||||| Sbjct: 64180 tcctatatatcaatcttcgtttccggaccattccggaaaccctcgtgacgtccgtgatct 64121 Query: 326 catctgttactccgaacaac 345 |||| | |||||||||||| Sbjct: 64120 catccgggactccgaacaac 64101 Score = 48.1 bits (24), Expect = 0.022 Identities = 67/80 (83%), Gaps = 1/80 (1%) Strand = Plus / Plus Query: 267 tcctatatatcaatcttcg-tcacggactattccagaactcctcgtggcgtccaagatct 325 ||||||||||||||||||| | ||||| ||||| ||| ||||||| ||||| ||||| Sbjct: 37448 tcctatatatcaatcttcgtttccggaccattccggaaaccctcgtgacgtccgtgatct 37507 Query: 326 catctgttactccgaacaac 345 |||| | |||||||||||| Sbjct: 37508 catccgggactccgaacaac 37527 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 267 tcctatatatcaatcttcgt 286 |||||||||||||||||||| Sbjct: 35409 tcctatatatcaatcttcgt 35428 Score = 40.1 bits (20), Expect = 5.4 Identities = 66/80 (82%), Gaps = 1/80 (1%) Strand = Plus / Plus Query: 267 tcctatatatcaatcttcgtcac-ggactattccagaactcctcgtggcgtccaagatct 325 |||||||||||||||||||| | |||| |||| ||| ||||||| ||||| ||||| Sbjct: 24873 tcctatatatcaatcttcgtttccggaccattctggaaaccctcgtgacgtccgtgatct 24932 Query: 326 catctgttactccgaacaac 345 |||| | |||||||||||| Sbjct: 24933 catccgggactccgaacaac 24952 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 267 tcctatatatcaatcttcgt 286 |||||||||||||||||||| Sbjct: 15798 tcctatatatcaatcttcgt 15817
>emb|Y18775.2|HROY18775 Hordeum roshevitzii BARE-1 long terminal repeat DNA (HROSD) Length = 1858 Score = 48.1 bits (24), Expect = 0.022 Identities = 67/80 (83%), Gaps = 1/80 (1%) Strand = Plus / Minus Query: 267 tcctatatatcaatcttcg-tcacggactattccagaactcctcgtggcgtccaagatct 325 ||||||||||||||||||| | ||||| ||||| ||| ||||||| ||||| ||||| Sbjct: 992 tcctatatatcaatcttcgtttccggaccattccggaaaccctcgtgacgtccgtgatct 933 Query: 326 catctgttactccgaacaac 345 |||| | |||||||||||| Sbjct: 932 catccgggactccgaacaac 913 Score = 40.1 bits (20), Expect = 5.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 186 ggtgaattcccgaaacccattcctcactcccg 217 |||||||||||| ||||||||| ||| ||||| Sbjct: 1073 ggtgaattcccggaacccattcgtcattcccg 1042
>emb|Y18770.2|HVUY18770 Hordeum vulgare BARE-1 long terminal repeat DNA (HVULD) Length = 1723 Score = 48.1 bits (24), Expect = 0.022 Identities = 67/80 (83%), Gaps = 1/80 (1%) Strand = Plus / Minus Query: 267 tcctatatatcaatcttcg-tcacggactattccagaactcctcgtggcgtccaagatct 325 ||||||||||||||||||| | ||||| ||||| ||| ||||||| ||||| ||||| Sbjct: 969 tcctatatatcaatcttcgtttccggacaattccggaaaccctcgtgacgtccgtgatct 910 Query: 326 catctgttactccgaacaac 345 |||| | |||||||||||| Sbjct: 909 catccgggactccgaacaac 890
>emb|Y18769.2|HVUY18769 Hordeum vulgare BARE-1 long terminal repeat DNA (HVULC) Length = 1830 Score = 48.1 bits (24), Expect = 0.022 Identities = 67/80 (83%), Gaps = 1/80 (1%) Strand = Plus / Minus Query: 267 tcctatatatcaatcttcg-tcacggactattccagaactcctcgtggcgtccaagatct 325 ||||||||||||||||||| | ||||| ||||| ||| ||||||| ||||| ||||| Sbjct: 997 tcctatatatcaatcttcgtttccggaccattccggaaaccctcgtgacgtccgtgatct 938 Query: 326 catctgttactccgaacaac 345 |||| | |||||||||||| Sbjct: 937 catccgggactccgaacaac 918 Score = 40.1 bits (20), Expect = 5.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 186 ggtgaattcccgaaacccattcctcactcccg 217 |||||||||||| ||||||||| ||| ||||| Sbjct: 1077 ggtgaattcccggaacccattcgtcattcccg 1046
>emb|Y18768.2|HVUY18768 Hordeum vulgare BARE-1 long terminal repeat DNA (HVULB) Length = 1736 Score = 48.1 bits (24), Expect = 0.022 Identities = 67/80 (83%), Gaps = 1/80 (1%) Strand = Plus / Minus Query: 267 tcctatatatcaatcttcg-tcacggactattccagaactcctcgtggcgtccaagatct 325 ||||||||||||||||||| | ||||| ||||| ||| ||||||| ||||| ||||| Sbjct: 966 tcctatatatcaatcttcgtttccggaccattccggaaaccctcgtgacgtccgtgatct 907 Query: 326 catctgttactccgaacaac 345 |||| | |||||||||||| Sbjct: 906 catccgggactccgaacaac 887
>emb|AJ279072.1|HVU279072 Hordeum vulgare BARE-2 and partial BAGY-2 retrotransposons Length = 19906 Score = 48.1 bits (24), Expect = 0.022 Identities = 67/80 (83%), Gaps = 1/80 (1%) Strand = Plus / Minus Query: 267 tcctatatatcaatcttcg-tcacggactattccagaactcctcgtggcgtccaagatct 325 ||||||||||||||||||| | ||||| ||||| ||| ||||||| ||||| ||||| Sbjct: 11365 tcctatatatcaatcttcgtttccggaccattccggaaaccctcgtgacgtccgtgatct 11306 Query: 326 catctgttactccgaacaac 345 |||| | |||||||||||| Sbjct: 11305 catccgggactccgaacaac 11286 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 267 tcctatatatcaatcttcgt 286 |||||||||||||||||||| Sbjct: 4563 tcctatatatcaatcttcgt 4544
>emb|AJ582411.1|HVU582411 Hordeum vulgare BARE-1 long terminal repeat Hv-b5 DNA Length = 571 Score = 46.1 bits (23), Expect = 0.088 Identities = 54/63 (85%), Gaps = 1/63 (1%) Strand = Plus / Minus Query: 267 tcctatatatcaatcttcgtcac-ggactattccagaactcctcgtggcgtccaagatct 325 ||||||||||||||||||||| | |||| ||||| ||| ||||||| ||||| ||||| Sbjct: 174 tcctatatatcaatcttcgtctctggaccattccggaaaccctcgtgacgtccgtgatct 115 Query: 326 cat 328 ||| Sbjct: 114 cat 112
>gb|AY943294.1| Hordeum vulgare subsp. vulgare clone BAC 673I14, complete sequence Length = 108608 Score = 46.1 bits (23), Expect = 0.088 Identities = 69/82 (84%), Gaps = 3/82 (3%) Strand = Plus / Plus Query: 266 ttcctatatatcaatctt--cgtcacggactattccagaactcctcgtggcgtccaagat 323 |||||||||||||||||| | || ||||| ||||| || ||||||||| ||||| ||| Sbjct: 61184 ttcctatatatcaatctttacctc-cggaccattccggagctcctcgtgacgtcctggat 61242 Query: 324 ctcatctgttactccgaacaac 345 |||||| | |||||||||||| Sbjct: 61243 ctcatccgggactccgaacaac 61264 Score = 46.1 bits (23), Expect = 0.088 Identities = 69/82 (84%), Gaps = 3/82 (3%) Strand = Plus / Plus Query: 266 ttcctatatatcaatctt--cgtcacggactattccagaactcctcgtggcgtccaagat 323 |||||||||||||||||| | || ||||| ||||| || ||||||||| ||||| ||| Sbjct: 54419 ttcctatatatcaatctttacctc-cggaccattccggagctcctcgtgacgtcctggat 54477 Query: 324 ctcatctgttactccgaacaac 345 |||||| | |||||||||||| Sbjct: 54478 ctcatccgggactccgaacaac 54499
>emb|CT009713.8| Mouse DNA sequence from clone RP23-151C6 on chromosome 13, complete sequence Length = 217752 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Minus Query: 47 ctcctcctcctagtcaaactcctccccttc 76 |||||||||| |||| |||||||||||||| Sbjct: 159022 ctcctcctccaagtccaactcctccccttc 158993
>emb|Y18779.2|HMAY18779 Hordeum marinum BARE-1 long terminal repeat DNA (HMARD) Length = 1968 Score = 44.1 bits (22), Expect = 0.35 Identities = 94/118 (79%) Strand = Plus / Minus Query: 289 cggactattccagaactcctcgtggcgtccaagatctcatctgttactccgaacaacttt 348 ||||| ||||| || ||||||||| |||| ||||||||| | ||||||||||| || Sbjct: 971 cggaccattccggagctcctcgtgatgtccgggatctcatccgggactccgaacaaactt 912 Query: 349 tattcaccaacacacataactcaactataccaaaacttcactgaaccttaagtgtgca 406 |||||| || ||||||||| || |||| |||| |||| |||| ||||||||||| Sbjct: 911 cggtcaccaccatacataactctacactaccgaaacgtcaccgaactttaagtgtgca 854
>emb|AJ582556.1|HVU582556 Hordeum vulgare BARE-1 long terminal repeat HvCal-14 mRNA Length = 751 Score = 42.1 bits (21), Expect = 1.4 Identities = 64/77 (83%), Gaps = 1/77 (1%) Strand = Plus / Minus Query: 268 cctatatatcaatcttcgt-cacggactattccagaactcctcgtggcgtccaagatctc 326 ||||||||||||||||||| ||||| ||||| ||| |||||||| ||||| |||| | Sbjct: 172 cctatatatcaatcttcgtatccggaccattccggaaatcctcgtgacgtccgtgatccc 113 Query: 327 atctgttactccgaaca 343 ||| | |||||||||| Sbjct: 112 atccgggactccgaaca 96
>emb|AJ582549.1|HVU582549 Hordeum vulgare BARE-1 long terminal repeat HvCal-6 mRNA Length = 751 Score = 42.1 bits (21), Expect = 1.4 Identities = 45/53 (84%) Strand = Plus / Minus Query: 165 ccggggtgggtggcccctcctggtgaattcccgaaacccattcctcactcccg 217 ||||||||||| ||||| || ||||| ||||| ||||||||| ||| ||||| Sbjct: 275 ccggggtgggttgccccccccagtgaactcccggaacccattcgtcattcccg 223 Score = 40.1 bits (20), Expect = 5.4 Identities = 63/76 (82%), Gaps = 1/76 (1%) Strand = Plus / Minus Query: 271 atatatcaatcttcgtcac-ggactattccagaactcctcgtggcgtccaagatctcatc 329 |||||||||||||||| | |||| ||||| ||| ||||||| ||||| ||||||||| Sbjct: 170 atatatcaatcttcgtttccggaccattccggaaaccctcgtgacgtccgtgatctcatc 111 Query: 330 tgttactccgaacaac 345 | |||||||||||| Sbjct: 110 cgggactccgaacaac 95
>gb|AC093087.3| Homo sapiens BAC clone RP11-785H2 from 7, complete sequence Length = 123039 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 61 caaactcctccccttctccac 81 ||||||||||||||||||||| Sbjct: 2786 caaactcctccccttctccac 2806
>gb|AC144780.1| Pan troglodytes BAC clone RP43-2J12 from 7, complete sequence Length = 191540 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 61 caaactcctccccttctccac 81 ||||||||||||||||||||| Sbjct: 94320 caaactcctccccttctccac 94300
>emb|AL645988.6| Mouse DNA sequence from clone RP23-67J22 on chromosome 11 Contains four novel genes (9130409J20Rik, A530088H08Rik), two genes for a novel proteins (2310004I24Rik, A730055C05Rik, LOC193004), the Sco1 gene for SCO cytochrome oxidase deficient homolog 1 (yeast), the 5' end of the Myh3 gene for skeletal muscle embryonic myosin heavy polypeptide 3 and a CpG island, complete sequence Length = 217003 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 263 tctttcctatatatcaatctt 283 ||||||||||||||||||||| Sbjct: 209158 tctttcctatatatcaatctt 209178
>gb|AC154331.1| Mus musculus BAC clone RP23-256F11 from chromosome 13, complete sequence Length = 175414 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 256 gaatacctctttcctatatat 276 ||||||||||||||||||||| Sbjct: 119131 gaatacctctttcctatatat 119111
>gb|AF459639.1| Triticum monococcum BAC clones 116F2 and 115G1 gene sequence Length = 215241 Score = 42.1 bits (21), Expect = 1.4 Identities = 39/45 (86%) Strand = Plus / Minus Query: 301 gaactcctcgtggcgtccaagatctcatctgttactccgaacaac 345 ||||||||||| ||||| ||||||||||| |||||||||||| Sbjct: 111951 gaactcctcgttacgtccgggatctcatctgggactccgaacaac 111907
>emb|Y18780.2|HEUY18780 Hordeum euclaston BARE-1 long terminal repeat DNA (HEUCA) Length = 1673 Score = 42.1 bits (21), Expect = 1.4 Identities = 60/73 (82%) Strand = Plus / Minus Query: 334 actccgaacaacttttattcaccaacacacataactcaactataccaaaacttcactgaa 393 |||| ||||||| || | ||||||||||| ||| ||||| |||| |||| |||| ||| Sbjct: 922 actcggaacaaccttcagtcaccaacacatatatctcaatactaccgaaacgtcaccgaa 863 Query: 394 ccttaagtgtgca 406 | ||||||||||| Sbjct: 862 cgttaagtgtgca 850
>ref|NM_123664.2| Arabidopsis thaliana ATTRX3; thiol-disulfide exchange intermediate AT5G42980 (ATTRX3) mRNA, complete cds Length = 686 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 340 aacaacttttattcaccaacacacataa 367 |||||| ||||||||||| ||||||||| Sbjct: 612 aacaacatttattcaccaccacacataa 585
>gb|AY643843.1|AY643842S2 Hordeum vulgare subsp. vulgare clones BAC 519K7 and 799C8 hardness locus region Length = 129099 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 267 tcctatatatcaatcttcgt 286 |||||||||||||||||||| Sbjct: 48852 tcctatatatcaatcttcgt 48871
>gb|AC113475.12| Mus musculus chromosome 12, clone RP23-304B1, complete sequence Length = 177032 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 220 actttaccagtaatgcccaa 239 |||||||||||||||||||| Sbjct: 148023 actttaccagtaatgcccaa 148042
>gb|AC113979.8| Mus musculus chromosome 12, clone RP23-478I20, complete sequence Length = 172842 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 220 actttaccagtaatgcccaa 239 |||||||||||||||||||| Sbjct: 155226 actttaccagtaatgcccaa 155207
>emb|AJ582547.1|HVU582547 Hordeum vulgare BARE-1 long terminal repeat HvCal-4 mRNA Length = 746 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 267 tcctatatatcaatcttcgt 286 |||||||||||||||||||| Sbjct: 173 tcctatatatcaatcttcgt 154
>emb|AJ582546.1|HVU582546 Hordeum vulgare BARE-1 long terminal repeat HvCal-3 mRNA Length = 756 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 267 tcctatatatcaatcttcgt 286 |||||||||||||||||||| Sbjct: 174 tcctatatatcaatcttcgt 155
>emb|AJ582539.1|HVU582539 Hordeum vulgare BARE-1 long terminal repeat HvLea-28 mRNA Length = 747 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 267 tcctatatatcaatcttcgt 286 |||||||||||||||||||| Sbjct: 175 tcctatatatcaatcttcgt 156
>emb|AJ582538.1|HVU582538 Hordeum vulgare BARE-1 long terminal repeat HvLea-26 mRNA Length = 721 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 267 tcctatatatcaatcttcgt 286 |||||||||||||||||||| Sbjct: 173 tcctatatatcaatcttcgt 154
>emb|AJ582536.1|HVU582536 Hordeum vulgare BARE-1 long terminal repeat HvLea-24 mRNA Length = 748 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 267 tcctatatatcaatcttcgt 286 |||||||||||||||||||| Sbjct: 175 tcctatatatcaatcttcgt 156
>emb|AJ582535.1|HVU582535 Hordeum vulgare BARE-1 long terminal repeat HvLea-22 mRNA Length = 748 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 267 tcctatatatcaatcttcgt 286 |||||||||||||||||||| Sbjct: 174 tcctatatatcaatcttcgt 155
>emb|AJ582528.1|HVU582528 Hordeum vulgare BARE-1 long terminal repeat HvLea-4 mRNA Length = 730 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 267 tcctatatatcaatcttcgt 286 |||||||||||||||||||| Sbjct: 174 tcctatatatcaatcttcgt 155
>emb|AJ582527.1|HVU582527 Hordeum vulgare BARE-1 long terminal repeat HvLea-1 mRNA Length = 748 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 267 tcctatatatcaatcttcgt 286 |||||||||||||||||||| Sbjct: 174 tcctatatatcaatcttcgt 155
>emb|AJ582410.1|HVU582410 Hordeum vulgare BARE-1 long terminal repeat Hv-b4 DNA Length = 571 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 267 tcctatatatcaatcttcgt 286 |||||||||||||||||||| Sbjct: 173 tcctatatatcaatcttcgt 154
>emb|AJ582409.1|HVU582409 Hordeum vulgare BARE-1 long terminal repeat Hv-b3 DNA Length = 570 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 267 tcctatatatcaatcttcgt 286 |||||||||||||||||||| Sbjct: 173 tcctatatatcaatcttcgt 154
>emb|AJ582408.1|HVU582408 Hordeum vulgare BARE-1 long terminal repeat Hv-b2 DNA Length = 578 Score = 40.1 bits (20), Expect = 5.4 Identities = 66/80 (82%), Gaps = 1/80 (1%) Strand = Plus / Minus Query: 267 tcctatatatcaatcttc-gtcacggactattccagaactcctcgtggcgtccaagatct 325 |||||||||||||||||| | ||||| ||||| ||| ||||||| ||||| ||||| Sbjct: 174 tcctatatatcaatcttcatttccggacaattccggaaaccctcgtgacgtccgtgatct 115 Query: 326 catctgttactccgaacaac 345 |||| | |||||||||||| Sbjct: 114 catccgagactccgaacaac 95
>emb|AJ582407.1|HVU582407 Hordeum vulgare BARE-1 long terminal repeat Hv-b1 DNA Length = 578 Score = 40.1 bits (20), Expect = 5.4 Identities = 66/80 (82%), Gaps = 1/80 (1%) Strand = Plus / Minus Query: 267 tcctatatatcaatcttc-gtcacggactattccagaactcctcgtggcgtccaagatct 325 |||||||||||||||||| | ||||| ||||| ||| ||||||| ||||| ||||| Sbjct: 174 tcctatatatcaatcttcatttccggacaattccggaaaccctcgtgacgtccgtgatct 115 Query: 326 catctgttactccgaacaac 345 |||| | |||||||||||| Sbjct: 114 catccgagactccgaacaac 95
>emb|AJ582406.1|HVU582406 Hordeum vulgare BARE-1 long terminal repeat Hv-a5 DNA Length = 578 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 267 tcctatatatcaatcttcgt 286 |||||||||||||||||||| Sbjct: 174 tcctatatatcaatcttcgt 155
>emb|AJ582405.1|HVU582405 Hordeum vulgare BARE-1 long terminal repeat Hv-a4 DNA Length = 581 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 267 tcctatatatcaatcttcgt 286 |||||||||||||||||||| Sbjct: 172 tcctatatatcaatcttcgt 153
>gb|AC119673.3| Homo sapiens chromosome 1 clone RP11-212H11, complete sequence Length = 187660 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 16 ccaagtgggtttggtggaggctct 39 |||||||| ||||||||||||||| Sbjct: 80225 ccaagtggctttggtggaggctct 80248
>gb|AY316305.1| Homo sapiens glutathione transferase zeta 1 (maleylacetoacetate isomerase) (GSTZ1) gene, complete cds Length = 12743 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 109 ggccacccagcccaccaggg 128 |||||||||||||||||||| Sbjct: 8342 ggccacccagcccaccaggg 8361
>emb|Z35474.1|ATTHIRED2 A.thaliana (GIF1) mRNA for thioredoxin Length = 489 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 340 aacaacttttattcaccaacacacataa 367 |||||| ||||||||||| ||||||||| Sbjct: 481 aacaacatttattcaccaccacacataa 454
>emb|X57845.1|HVGNIRE H.vulgare gene for nitrate reductase Length = 7299 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 267 tcctatatatcaatcttcgt 286 |||||||||||||||||||| Sbjct: 234 tcctatatatcaatcttcgt 215
>gb|AF450249.1| Spartina anglica WIS-2-1A Ty1-copia-like retrotransposon 5' LTR sequence Length = 986 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 115 ccagcccaccaggggctggt 134 |||||||||||||||||||| Sbjct: 255 ccagcccaccaggggctggt 274
>gb|AC114323.2| Homo sapiens chromosome 5 clone RP11-93N19, complete sequence Length = 172823 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 40 agaaggactcctcctcctag 59 |||||||||||||||||||| Sbjct: 127655 agaaggactcctcctcctag 127636
>gb|AC110616.4| Homo sapiens BAC clone RP11-597I10 from 4, complete sequence Length = 80656 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 345 cttttattcaccaacacaca 364 |||||||||||||||||||| Sbjct: 66042 cttttattcaccaacacaca 66023
>gb|AY059870.1| Arabidopsis thaliana thioredoxin (clone GIF1) (At5g42980; MBD2.18) mRNA, complete cds Length = 534 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 340 aacaacttttattcaccaacacacataa 367 |||||| ||||||||||| ||||||||| Sbjct: 523 aacaacatttattcaccaccacacataa 496
>gb|AY951945.1| Triticum monococcum TmBAC 60J11 FR-Am2 locus, genomic sequence Length = 103866 Score = 40.1 bits (20), Expect = 5.4 Identities = 50/60 (83%) Strand = Plus / Minus Query: 289 cggactattccagaactcctcgtggcgtccaagatctcatctgttactccgaacaacttt 348 ||||| ||||| |||||||||||| ||| | |||| |||| | ||||||||||||||| Sbjct: 72665 cggaccattccggaactcctcgtgacgttcgggatcacatccgggactccgaacaacttt 72606
>emb|BX855613.7| Zebrafish DNA sequence from clone CH211-208F21 in linkage group 14, complete sequence Length = 201273 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 337 ccgaacaacttttattcaccaaca 360 |||| ||||||||||||||||||| Sbjct: 9064 ccgaccaacttttattcaccaaca 9041
>emb|BX830123.1|CNS0A06Y Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB61ZA02 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 508 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 340 aacaacttttattcaccaacacacataa 367 |||||| ||||||||||| ||||||||| Sbjct: 462 aacaacatttattcaccaccacacataa 435
>emb|BX830518.1|CNS09ZXF Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB88ZF03 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 556 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 340 aacaacttttattcaccaacacacataa 367 |||||| ||||||||||| ||||||||| Sbjct: 510 aacaacatttattcaccaccacacataa 483
>emb|BX833468.1|CNS09Z1R Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL57ZG11 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 556 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 340 aacaacttttattcaccaacacacataa 367 |||||| ||||||||||| ||||||||| Sbjct: 510 aacaacatttattcaccaccacacataa 483
>gb|AY085117.1| Arabidopsis thaliana clone 13096 mRNA, complete sequence Length = 639 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 340 aacaacttttattcaccaacacacataa 367 |||||| ||||||||||| ||||||||| Sbjct: 612 aacaacatttattcaccaccacacataa 585
>gb|AC134504.2| Homo sapiens 3 BAC RP11-316F12 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 87167 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 168 gggtgggtggcccctcctgg 187 |||||||||||||||||||| Sbjct: 41136 gggtgggtggcccctcctgg 41155
>gb|AC007954.7|AC007954 Homo sapiens chromosome 14 clone RP11-493G17 and CTD-2516D11 map 14q24.3, complete sequence Length = 210204 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 109 ggccacccagcccaccaggg 128 |||||||||||||||||||| Sbjct: 114417 ggccacccagcccaccaggg 114436
>dbj|AB008264.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MBD2 Length = 79976 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 340 aacaacttttattcaccaacacacataa 367 |||||| ||||||||||| ||||||||| Sbjct: 72760 aacaacatttattcaccaccacacataa 72733
>emb|Z17327.1|HVBARE1 H.vulgare DNA for BARE-1 copia-like retroelement Length = 13271 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 267 tcctatatatcaatcttcgt 286 |||||||||||||||||||| Sbjct: 11541 tcctatatatcaatcttcgt 11522
>gb|AF053542.1|HSGSTZ1G4 Homo sapiens glutathione transferase zeta 1 (GSTZ1) gene, exons 4 and 5 Length = 876 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 109 ggccacccagcccaccaggg 128 |||||||||||||||||||| Sbjct: 136 ggccacccagcccaccaggg 155
>gb|AY642925.1| Hordeum vulgare BAC 124C9, complete sequence Length = 12258 Score = 40.1 bits (20), Expect = 5.4 Identities = 66/80 (82%), Gaps = 1/80 (1%) Strand = Plus / Plus Query: 267 tcctatatatcaatcttc-gtcacggactattccagaactcctcgtggcgtccaagatct 325 |||||||||||||||||| | ||||| ||||| ||| ||||||| ||||| ||||| Sbjct: 6347 tcctatatatcaatcttcatttccggaccattccggaaaccctcgtgacgtccgtgatct 6406 Query: 326 catctgttactccgaacaac 345 |||| | |||||||||||| Sbjct: 6407 catccgagactccgaacaac 6426
>emb|AL669974.6| Mouse DNA sequence from clone RP23-229E11 on chromosome X, complete sequence Length = 188048 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 342 caacttttattcaccaacacacataact 369 |||| |||||||||||||| |||||||| Sbjct: 100418 caacatttattcaccaacatacataact 100391 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,905,432 Number of Sequences: 3902068 Number of extensions: 3905432 Number of successful extensions: 61075 Number of sequences better than 10.0: 115 Number of HSP's better than 10.0 without gapping: 109 Number of HSP's successfully gapped in prelim test: 6 Number of HSP's that attempted gapping in prelim test: 60355 Number of HSP's gapped (non-prelim): 661 length of query: 406 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 384 effective length of database: 17,147,199,772 effective search space: 6584524712448 effective search space used: 6584524712448 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
