ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal14k23
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RECA_WOLPM (P62222) Protein recA (Recombinase A) 29 4.0
2GBLP_SCHPO (Q10281) Guanine nucleotide-binding protein beta subu... 28 5.2
3RECA_WOLTR (Q5GSK9) Protein recA (Recombinase A) 28 5.2
4PDR5_ARATH (Q9ZUT8) Probable pleiotropic drug resistance protein 5 28 8.9

>RECA_WOLPM (P62222) Protein recA (Recombinase A)|
          Length = 355

 Score = 28.9 bits (63), Expect = 4.0
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 97  QKLKLTTTQYELHQPNTGRQPLHIASY 17
           +KL ++T    + QP+TG Q LHI  Y
Sbjct: 111 RKLGVSTDDLVISQPDTGEQALHIVEY 137



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>GBLP_SCHPO (Q10281) Guanine nucleotide-binding protein beta subunit-like|
           protein (Receptor of activated protein kinase C)
          Length = 314

 Score = 28.5 bits (62), Expect = 5.2
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 95  ETKANNNSVRVTPTKYWAAAVTHSKLQ 15
           E KAN N++  +P +YW  A T S ++
Sbjct: 231 EAKANINALVFSPNRYWLCAATGSSIR 257



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>RECA_WOLTR (Q5GSK9) Protein recA (Recombinase A)|
          Length = 355

 Score = 28.5 bits (62), Expect = 5.2
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 97  QKLKLTTTQYELHQPNTGRQPLHIASY 17
           +KL + T    + QP+TG Q LHI  Y
Sbjct: 111 RKLGVNTDNLVISQPDTGEQALHIVEY 137



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>PDR5_ARATH (Q9ZUT8) Probable pleiotropic drug resistance protein 5|
          Length = 1413

 Score = 27.7 bits (60), Expect = 8.9
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +1

Query: 1    LFVVACNLLCVTAAAQYLVGVTRTELLLALV 93
            L+ + CNLLC    A +L+ +T   ++ A++
Sbjct: 1276 LYAMFCNLLCFNYLAMFLISITPNFMVAAIL 1306


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,806,405
Number of Sequences: 219361
Number of extensions: 264796
Number of successful extensions: 558
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 558
length of database: 80,573,946
effective HSP length: 32
effective length of database: 73,554,394
effective search space used: 1765305456
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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