>JAG1A_BRARE (Q90Y57) Jagged-1a precursor (Jagged1a) (Jagged1)|
          Length = 1242

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 21/75 (28%), Positives = 32/75 (42%)
 Frame = -1

Query: 292 LAFLPSAVPGPNSHQGIHIHQGNHFHHQNQTAFARITLTQGS*RHFQLFPMLAEATTLDQ 113
           L  + S+V GP+     H H G HF    Q  F   T    +    +  P L+  T +D+
Sbjct: 592 LRLISSSVCGPHGRCRSHSHAGGHFSCDCQDGFTG-TYCHENINDCESSPCLSGGTCIDK 650

Query: 112 LS**HCLSCP*PWSG 68
           ++   C+ C   W G
Sbjct: 651 INAYQCI-CADGWEG 664

>RPOA_LDVC (Q06502) Replicase polyprotein 1ab (ORF1ab polyprotein) [Includes:|
           Replicase polyprotein 1a (ORF1a)] [Contains: Nsp1-alpha
           papain-like cysteine proteinase (EC 3.4.22.-)
           (PCP1-alpha); Nsp1-beta papain-like cysteine proteinase
           (EC 3.4.22.-) (PCP1
          Length = 3637

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 19/56 (33%), Positives = 26/56 (46%)
 Frame = +2

Query: 110 QLIQSRCLSKHGKQLEMPLTPLSQSYPGKSRLILMVEMISLMDMNALMTIGTRNCR 277
           Q+  +RCL+        PL PLSQ +P    L L     S +   A +T  T+ CR
Sbjct: 22  QVYCTRCLAAR------PLLPLSQQHPRLGALGLFYRPASPLSWEAPVTYPTKECR 71

>DNLJ_STAAN (Q7A4Q5) DNA ligase (EC 6.5.1.2) (Polydeoxyribonucleotide synthase|
           [NAD+])
          Length = 667

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +1

Query: 43  AESSLKDQIHSKVMGTIGNVINSIDPKSLPQQAWETAGNAVNSLESKLSG 192
           A++S K   H   M ++GN  N  D +   Q+  E  GN     E K+ G
Sbjct: 66  AQASFKKVNHDTPMLSLGNAFNEDDLRKFDQRIREQIGNVEYMCELKIDG 115

>DNLJ_STAAM (Q99SY3) DNA ligase (EC 6.5.1.2) (Polydeoxyribonucleotide synthase|
           [NAD+])
          Length = 667

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +1

Query: 43  AESSLKDQIHSKVMGTIGNVINSIDPKSLPQQAWETAGNAVNSLESKLSG 192
           A++S K   H   M ++GN  N  D +   Q+  E  GN     E K+ G
Sbjct: 66  AQASFKKVNHDTPMLSLGNAFNEDDLRKFDQRIREQIGNVEYMCELKIDG 115

>DNAK_BUCAI (O32464) Chaperone protein dnaK (Heat shock protein 70) (Heat shock|
           70 kDa protein) (HSP70)
          Length = 637

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 20/63 (31%), Positives = 29/63 (46%)
 Frame = +1

Query: 295 NIRNLLGGIVAIIGRTCKNDEIQQSKDTKXXXXXXXXXXDGDTFLHTSVYAPSAPPLLDE 474
           N +N L  I  +IGR  K+DE+Q  +D K          +GD ++        APP +  
Sbjct: 61  NPKNTLFAIKRLIGRKFKDDEVQ--RDIKIMPYNIVNSDNGDAWIDVK-KQKMAPPQISA 117

Query: 475 EAL 483
           E L
Sbjct: 118 EVL 120


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.311    0.132    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,265,795
Number of Sequences: 219361
Number of extensions: 1412317
Number of successful extensions: 3399
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3380
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4528412720
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)