ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal14j09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_475819.1| Oryza sativa (japonica cultivar-group), predic... 379 e-102
2dbj|AK071703.1| Oryza sativa (japonica cultivar-group) cDNA clon... 379 e-102
3dbj|AK071306.1| Oryza sativa (japonica cultivar-group) cDNA clon... 379 e-102
4dbj|AK060785.1| Oryza sativa (japonica cultivar-group) cDNA clon... 367 2e-98
5gb|AC104713.3| Oryza sativa (japonica cultivar-group) chromosome... 192 7e-46
6dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 192 7e-46
7ref|XM_522861.1| PREDICTED: Pan troglodytes chromosome 14 open r... 40 6.6
8ref|NM_001035101.1| Bos taurus thioredoxin-like (TXNL2), mRNA 40 6.6
9gb|BT021690.1| Bos taurus thioredoxin-like 2 (TXNL2), mRNA, comp... 40 6.6
10emb|CT025272.2| Xenopus tropicalis finished cDNA, clone TEgg137j20 40 6.6
11ref|XM_810332.1| Trypanosoma cruzi strain CL Brener hypothetical... 40 6.6
12gb|AC108945.4| Mus musculus BAC clone RP23-119J11 from 15, compl... 40 6.6
13gb|AC110374.3| Mus musculus BAC clone RP23-293P18 from 15, compl... 40 6.6
14emb|CR352255.9| Zebrafish DNA sequence from clone CH211-118E10 i... 40 6.6
15emb|CR361560.10| Zebrafish DNA sequence from clone CH211-122G18 ... 40 6.6
16ref|NM_001004870.1| Xenopus tropicalis MGC79624 protein (MGC7962... 40 6.6
17gb|AC124420.4| Mus musculus BAC clone RP24-322N8 from chromosome... 40 6.6
18gb|AC020595.7| Homo sapiens BAC clone RP11-358M9 from 2, complet... 40 6.6
19emb|BX000428.10| Mouse DNA sequence from clone RP23-474G7 on chr... 40 6.6
20ref|XM_552209.1| Anopheles gambiae str. PEST ENSANGP00000029550 ... 40 6.6
21gb|BC075104.1| Xenopus tropicalis MGC79624 protein, mRNA (cDNA c... 40 6.6
22gb|AY609618.1| Sus scrofa clone Clu_21370.scr.msk.p1.Contig5, mR... 40 6.6

>ref|XM_475819.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1077

 Score =  379 bits (191), Expect = e-102
 Identities = 404/475 (85%)
 Strand = Plus / Plus

                                                                       
Query: 15  tccatgggtgccatgatttcctgcaaactggcggcgatggcgcctcaccggctgtcctcg 74
           |||||||| || ||||| |||||||| ||||| || |||||||| ||| || | | ||||
Sbjct: 382 tccatgggcgcgatgatatcctgcaagctggcagccatggcgccgcacaggatttgctcg 441

                                                                       
Query: 75  ctggcattgctgaacgtcaccggcggtgggatggagtgtttccccaaggtagatggacag 134
            |||| ||||| || || || || |||||  |  |||| ||||| ||| ||||||| |||
Sbjct: 442 ttggcgttgcttaatgttactggaggtggcttccagtgcttcccgaagttagatgggcag 501

                                                                       
Query: 135 atgctctccctcgcgttccggttcttaagggccagaactccagagcaaagagctctagtc 194
           |||||||| || || ||||| ||||||||||| |||||||||||  |||||||||| || 
Sbjct: 502 atgctctcgcttgcattccgtttcttaagggcaagaactccagaagaaagagctctggta 561

                                                                       
Query: 195 gatttggaaacccactatacgaaggagtaccttgatgaggaagttgaatcctgcacaagg 254
           |||||||||||||| ||||| ||||| || ||||||||| |||||| ||| ||||| |||
Sbjct: 562 gatttggaaacccattatacaaaggaatatcttgatgagaaagttggatcatgcacgagg 621

                                                                       
Query: 255 agagcgatcctgtataaggaatatgtgaaaggcatatcatctacagggatgcaatgtaat 314
           ||| | ||||| ||| | ||||||||||| ||||||||||| ||||||||||| | ||| 
Sbjct: 622 agaacaatcctctatcaagaatatgtgaagggcatatcatcgacagggatgcagtctaac 681

                                                                       
Query: 315 tgcgggtttgaaggtcaaattaacgcatgctggactcacaaagtgacaactaaagaacta 374
           || ||||||||||||||| |||| |||||||||||||||||  |||||||||||||||||
Sbjct: 682 tgtgggtttgaaggtcaagttaatgcatgctggactcacaatatgacaactaaagaacta 741

                                                                       
Query: 375 gatacaattcgtgctgccggttttctagtttcagttattcacggaaggcatgatattatt 434
           |||||||||||  |||||||||||||||||||||||||||| || |||  ||| ||||||
Sbjct: 742 gatacaattcggtctgccggttttctagtttcagttattcatgggaggtctgacattatt 801

                                                                  
Query: 435 gcgcaagtatgtcatgcaaggcggcttgcacaaaggcttcttcctgttgctagaa 489
           |||||| |||||||||| || || |||||| |||||||| |||||||||||||||
Sbjct: 802 gcgcaattatgtcatgcgagacgacttgcagaaaggcttattcctgttgctagaa 856



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>dbj|AK071703.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023112L03, full
            insert sequence
          Length = 1561

 Score =  379 bits (191), Expect = e-102
 Identities = 404/475 (85%)
 Strand = Plus / Plus

                                                                        
Query: 15   tccatgggtgccatgatttcctgcaaactggcggcgatggcgcctcaccggctgtcctcg 74
            |||||||| || ||||| |||||||| ||||| || |||||||| ||| || | | ||||
Sbjct: 528  tccatgggcgcgatgatatcctgcaagctggcagccatggcgccgcacaggatttgctcg 587

                                                                        
Query: 75   ctggcattgctgaacgtcaccggcggtgggatggagtgtttccccaaggtagatggacag 134
             |||| ||||| || || || || |||||  |  |||| ||||| ||| ||||||| |||
Sbjct: 588  ttggcgttgcttaatgttactggaggtggcttccagtgcttcccgaagttagatgggcag 647

                                                                        
Query: 135  atgctctccctcgcgttccggttcttaagggccagaactccagagcaaagagctctagtc 194
            |||||||| || || ||||| ||||||||||| |||||||||||  |||||||||| || 
Sbjct: 648  atgctctcgcttgcattccgtttcttaagggcaagaactccagaagaaagagctctggta 707

                                                                        
Query: 195  gatttggaaacccactatacgaaggagtaccttgatgaggaagttgaatcctgcacaagg 254
            |||||||||||||| ||||| ||||| || ||||||||| |||||| ||| ||||| |||
Sbjct: 708  gatttggaaacccattatacaaaggaatatcttgatgagaaagttggatcatgcacgagg 767

                                                                        
Query: 255  agagcgatcctgtataaggaatatgtgaaaggcatatcatctacagggatgcaatgtaat 314
            ||| | ||||| ||| | ||||||||||| ||||||||||| ||||||||||| | ||| 
Sbjct: 768  agaacaatcctctatcaagaatatgtgaagggcatatcatcgacagggatgcagtctaac 827

                                                                        
Query: 315  tgcgggtttgaaggtcaaattaacgcatgctggactcacaaagtgacaactaaagaacta 374
            || ||||||||||||||| |||| |||||||||||||||||  |||||||||||||||||
Sbjct: 828  tgtgggtttgaaggtcaagttaatgcatgctggactcacaatatgacaactaaagaacta 887

                                                                        
Query: 375  gatacaattcgtgctgccggttttctagtttcagttattcacggaaggcatgatattatt 434
            |||||||||||  |||||||||||||||||||||||||||| || |||  ||| ||||||
Sbjct: 888  gatacaattcggtctgccggttttctagtttcagttattcatgggaggtctgacattatt 947

                                                                   
Query: 435  gcgcaagtatgtcatgcaaggcggcttgcacaaaggcttcttcctgttgctagaa 489
            |||||| |||||||||| || || |||||| |||||||| |||||||||||||||
Sbjct: 948  gcgcaattatgtcatgcgagacgacttgcagaaaggcttattcctgttgctagaa 1002



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>dbj|AK071306.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023088C20, full
            insert sequence
          Length = 1860

 Score =  379 bits (191), Expect = e-102
 Identities = 404/475 (85%)
 Strand = Plus / Plus

                                                                        
Query: 15   tccatgggtgccatgatttcctgcaaactggcggcgatggcgcctcaccggctgtcctcg 74
            |||||||| || ||||| |||||||| ||||| || |||||||| ||| || | | ||||
Sbjct: 701  tccatgggcgcgatgatatcctgcaagctggcagccatggcgccgcacaggatttgctcg 760

                                                                        
Query: 75   ctggcattgctgaacgtcaccggcggtgggatggagtgtttccccaaggtagatggacag 134
             |||| ||||| || || || || |||||  |  |||| ||||| ||| ||||||| |||
Sbjct: 761  ttggcgttgcttaatgttactggaggtggcttccagtgcttcccgaagttagatgggcag 820

                                                                        
Query: 135  atgctctccctcgcgttccggttcttaagggccagaactccagagcaaagagctctagtc 194
            |||||||| || || ||||| ||||||||||| |||||||||||  |||||||||| || 
Sbjct: 821  atgctctcgcttgcattccgtttcttaagggcaagaactccagaagaaagagctctggta 880

                                                                        
Query: 195  gatttggaaacccactatacgaaggagtaccttgatgaggaagttgaatcctgcacaagg 254
            |||||||||||||| ||||| ||||| || ||||||||| |||||| ||| ||||| |||
Sbjct: 881  gatttggaaacccattatacaaaggaatatcttgatgagaaagttggatcatgcacgagg 940

                                                                        
Query: 255  agagcgatcctgtataaggaatatgtgaaaggcatatcatctacagggatgcaatgtaat 314
            ||| | ||||| ||| | ||||||||||| ||||||||||| ||||||||||| | ||| 
Sbjct: 941  agaacaatcctctatcaagaatatgtgaagggcatatcatcgacagggatgcagtctaac 1000

                                                                        
Query: 315  tgcgggtttgaaggtcaaattaacgcatgctggactcacaaagtgacaactaaagaacta 374
            || ||||||||||||||| |||| |||||||||||||||||  |||||||||||||||||
Sbjct: 1001 tgtgggtttgaaggtcaagttaatgcatgctggactcacaatatgacaactaaagaacta 1060

                                                                        
Query: 375  gatacaattcgtgctgccggttttctagtttcagttattcacggaaggcatgatattatt 434
            |||||||||||  |||||||||||||||||||||||||||| || |||  ||| ||||||
Sbjct: 1061 gatacaattcggtctgccggttttctagtttcagttattcatgggaggtctgacattatt 1120

                                                                   
Query: 435  gcgcaagtatgtcatgcaaggcggcttgcacaaaggcttcttcctgttgctagaa 489
            |||||| |||||||||| || || |||||| |||||||| |||||||||||||||
Sbjct: 1121 gcgcaattatgtcatgcgagacgacttgcagaaaggcttattcctgttgctagaa 1175



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>dbj|AK060785.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-033-D03, full
           insert sequence
          Length = 1090

 Score =  367 bits (185), Expect = 2e-98
 Identities = 332/381 (87%)
 Strand = Plus / Plus

                                                                       
Query: 109 agtgtttccccaaggtagatggacagatgctctccctcgcgttccggttcttaagggcca 168
           |||| ||||| ||| ||||||| ||||||||||| || || ||||| ||||||||||| |
Sbjct: 25  agtgcttcccgaagttagatgggcagatgctctcgcttgcattccgtttcttaagggcaa 84

                                                                       
Query: 169 gaactccagagcaaagagctctagtcgatttggaaacccactatacgaaggagtaccttg 228
           ||||||||||  |||||||||| || |||||||||||||| ||||| ||||| || ||||
Sbjct: 85  gaactccagaagaaagagctctggtagatttggaaacccattatacaaaggaatatcttg 144

                                                                       
Query: 229 atgaggaagttgaatcctgcacaaggagagcgatcctgtataaggaatatgtgaaaggca 288
           ||||| |||||| ||| ||||| |||||| | ||||| ||| | ||||||||||| ||||
Sbjct: 145 atgagaaagttggatcatgcacgaggagaacaatcctctatcaagaatatgtgaagggca 204

                                                                       
Query: 289 tatcatctacagggatgcaatgtaattgcgggtttgaaggtcaaattaacgcatgctgga 348
           ||||||| ||||||||||| | ||| || ||||||||||||||| |||| ||||||||||
Sbjct: 205 tatcatcgacagggatgcagtctaactgtgggtttgaaggtcaagttaatgcatgctgga 264

                                                                       
Query: 349 ctcacaaagtgacaactaaagaactagatacaattcgtgctgccggttttctagtttcag 408
           |||||||  ||||||||||||||||||||||||||||  |||||||||||||||||||||
Sbjct: 265 ctcacaatatgacaactaaagaactagatacaattcggtctgccggttttctagtttcag 324

                                                                       
Query: 409 ttattcacggaaggcatgatattattgcgcaagtatgtcatgcaaggcggcttgcacaaa 468
           ||||||| || |||  ||| |||||||||||| |||||||||| || || |||||| |||
Sbjct: 325 ttattcatgggaggtctgacattattgcgcaattatgtcatgcgagacgacttgcagaaa 384

                                
Query: 469 ggcttcttcctgttgctagaa 489
           ||||| |||||||||||||||
Sbjct: 385 ggcttattcctgttgctagaa 405



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>gb|AC104713.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1362_G11,
             complete sequence
          Length = 115808

 Score =  192 bits (97), Expect = 7e-46
 Identities = 133/145 (91%)
 Strand = Plus / Minus

                                                                         
Query: 271   aggaatatgtgaaaggcatatcatctacagggatgcaatgtaattgcgggtttgaaggtc 330
             ||||||||||||| ||||||||||| ||||||||||| | ||| || |||||||||||||
Sbjct: 89331 aggaatatgtgaagggcatatcatcgacagggatgcagtctaactgtgggtttgaaggtc 89272

                                                                         
Query: 331   aaattaacgcatgctggactcacaaagtgacaactaaagaactagatacaattcgtgctg 390
             || |||| |||||||||||||||||  ||||||||||||||||||||||||||||  |||
Sbjct: 89271 aagttaatgcatgctggactcacaatatgacaactaaagaactagatacaattcggtctg 89212

                                      
Query: 391   ccggttttctagtttcagttattca 415
             |||||||||||||||||||||||||
Sbjct: 89211 ccggttttctagtttcagttattca 89187



 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 84/96 (87%)
 Strand = Plus / Minus

                                                                         
Query: 124   tagatggacagatgctctccctcgcgttccggttcttaagggccagaactccagagcaaa 183
             ||||||| ||||||||||| || || ||||| ||||||||||| |||||||||||  |||
Sbjct: 90027 tagatgggcagatgctctcgcttgcattccgtttcttaagggcaagaactccagaagaaa 89968

                                                 
Query: 184   gagctctagtcgatttggaaacccactatacgaagg 219
             ||||||| || |||||||||||||| ||||| ||||
Sbjct: 89967 gagctctggtagatttggaaacccattatacaaagg 89932



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 55/61 (90%)
 Strand = Plus / Minus

                                                                         
Query: 429   attattgcgcaagtatgtcatgcaaggcggcttgcacaaaggcttcttcctgttgctaga 488
             |||||||||||| |||||||||| || || |||||| |||||||| ||||||||||||||
Sbjct: 89077 attattgcgcaattatgtcatgcgagacgacttgcagaaaggcttattcctgttgctaga 89018

              
Query: 489   a 489
             |
Sbjct: 89017 a 89017



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  192 bits (97), Expect = 7e-46
 Identities = 133/145 (91%)
 Strand = Plus / Minus

                                                                            
Query: 271      aggaatatgtgaaaggcatatcatctacagggatgcaatgtaattgcgggtttgaaggtc 330
                ||||||||||||| ||||||||||| ||||||||||| | ||| || |||||||||||||
Sbjct: 26708334 aggaatatgtgaagggcatatcatcgacagggatgcagtctaactgtgggtttgaaggtc 26708275

                                                                            
Query: 331      aaattaacgcatgctggactcacaaagtgacaactaaagaactagatacaattcgtgctg 390
                || |||| |||||||||||||||||  ||||||||||||||||||||||||||||  |||
Sbjct: 26708274 aagttaatgcatgctggactcacaatatgacaactaaagaactagatacaattcggtctg 26708215

                                         
Query: 391      ccggttttctagtttcagttattca 415
                |||||||||||||||||||||||||
Sbjct: 26708214 ccggttttctagtttcagttattca 26708190



 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 84/96 (87%)
 Strand = Plus / Minus

                                                                            
Query: 124      tagatggacagatgctctccctcgcgttccggttcttaagggccagaactccagagcaaa 183
                ||||||| ||||||||||| || || ||||| ||||||||||| |||||||||||  |||
Sbjct: 26709030 tagatgggcagatgctctcgcttgcattccgtttcttaagggcaagaactccagaagaaa 26708971

                                                    
Query: 184      gagctctagtcgatttggaaacccactatacgaagg 219
                ||||||| || |||||||||||||| ||||| ||||
Sbjct: 26708970 gagctctggtagatttggaaacccattatacaaagg 26708935



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 55/61 (90%)
 Strand = Plus / Minus

                                                                            
Query: 429      attattgcgcaagtatgtcatgcaaggcggcttgcacaaaggcttcttcctgttgctaga 488
                |||||||||||| |||||||||| || || |||||| |||||||| ||||||||||||||
Sbjct: 26708080 attattgcgcaattatgtcatgcgagacgacttgcagaaaggcttattcctgttgctaga 26708021

                 
Query: 489      a 489
                |
Sbjct: 26708020 a 26708020



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>ref|XM_522861.1| PREDICTED: Pan troglodytes chromosome 14 open reading frame 101
            (LOC467464), mRNA
          Length = 2196

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 64   ggctgtcctcgctggcattg 83
            ||||||||||||||||||||
Sbjct: 1164 ggctgtcctcgctggcattg 1183



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>ref|NM_001035101.1| Bos taurus thioredoxin-like (TXNL2), mRNA
          Length = 1211

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 364 ctaaagaactagatacaatt 383
           ||||||||||||||||||||
Sbjct: 666 ctaaagaactagatacaatt 685



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>gb|BT021690.1| Bos taurus thioredoxin-like 2 (TXNL2), mRNA, complete cds
          Length = 1211

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 364 ctaaagaactagatacaatt 383
           ||||||||||||||||||||
Sbjct: 666 ctaaagaactagatacaatt 685



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>emb|CT025272.2| Xenopus tropicalis finished cDNA, clone TEgg137j20
          Length = 2348

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 270 aaggaatatgtgaaaggcat 289
           ||||||||||||||||||||
Sbjct: 290 aaggaatatgtgaaaggcat 309



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>ref|XM_810332.1| Trypanosoma cruzi strain CL Brener hypothetical protein
           (Tc00.1047053511577.80) partial mRNA
          Length = 705

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 139 tctccctcgcgttccggttc 158
           ||||||||||||||||||||
Sbjct: 315 tctccctcgcgttccggttc 334



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>gb|AC108945.4| Mus musculus BAC clone RP23-119J11 from 15, complete sequence
          Length = 200294

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 340   catgctggactcacaaagtg 359
             ||||||||||||||||||||
Sbjct: 33686 catgctggactcacaaagtg 33705



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>gb|AC110374.3| Mus musculus BAC clone RP23-293P18 from 15, complete sequence
          Length = 199869

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 340   catgctggactcacaaagtg 359
             ||||||||||||||||||||
Sbjct: 28656 catgctggactcacaaagtg 28637



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>emb|CR352255.9| Zebrafish DNA sequence from clone CH211-118E10 in linkage group 24,
             complete sequence
          Length = 161221

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 395   ttttctagtttcagttattc 414
             ||||||||||||||||||||
Sbjct: 33227 ttttctagtttcagttattc 33208



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>emb|CR361560.10| Zebrafish DNA sequence from clone CH211-122G18 in linkage group 24,
             complete sequence
          Length = 184660

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 395   ttttctagtttcagttattc 414
             ||||||||||||||||||||
Sbjct: 89445 ttttctagtttcagttattc 89426



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>ref|NM_001004870.1| Xenopus tropicalis MGC79624 protein (MGC79624), mRNA
          Length = 4077

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 270 aaggaatatgtgaaaggcat 289
           ||||||||||||||||||||
Sbjct: 314 aaggaatatgtgaaaggcat 333



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>gb|AC124420.4| Mus musculus BAC clone RP24-322N8 from chromosome 12, complete sequence
          Length = 164950

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 415    acggaaggcatgatattatt 434
              ||||||||||||||||||||
Sbjct: 108577 acggaaggcatgatattatt 108558



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>gb|AC020595.7| Homo sapiens BAC clone RP11-358M9 from 2, complete sequence
          Length = 189219

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 223   accttgatgaggaagttgaa 242
             ||||||||||||||||||||
Sbjct: 28163 accttgatgaggaagttgaa 28182



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>emb|BX000428.10| Mouse DNA sequence from clone RP23-474G7 on chromosome X, complete
             sequence
          Length = 162246

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 350   tcacaaagtgacaactaaag 369
             ||||||||||||||||||||
Sbjct: 97358 tcacaaagtgacaactaaag 97339



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>ref|XM_552209.1| Anopheles gambiae str. PEST ENSANGP00000029550
           (ENSANGG00000024416), partial mRNA
          Length = 333

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 170 aactccagagcaaagagctc 189
           ||||||||||||||||||||
Sbjct: 280 aactccagagcaaagagctc 261



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>gb|BC075104.1| Xenopus tropicalis MGC79624 protein, mRNA (cDNA clone MGC:79624
           IMAGE:6979823), complete cds
          Length = 4077

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 270 aaggaatatgtgaaaggcat 289
           ||||||||||||||||||||
Sbjct: 314 aaggaatatgtgaaaggcat 333



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>gb|AY609618.1| Sus scrofa clone Clu_21370.scr.msk.p1.Contig5, mRNA sequence
          Length = 1224

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 364 ctaaagaactagatacaatt 383
           ||||||||||||||||||||
Sbjct: 668 ctaaagaactagatacaatt 687


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,606,130
Number of Sequences: 3902068
Number of extensions: 3606130
Number of successful extensions: 62662
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 62609
Number of HSP's gapped (non-prelim): 53
length of query: 489
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 467
effective length of database: 17,147,199,772
effective search space: 8007742293524
effective search space used: 8007742293524
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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