| Clone Name | baal14j09 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_475819.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1077 Score = 379 bits (191), Expect = e-102 Identities = 404/475 (85%) Strand = Plus / Plus Query: 15 tccatgggtgccatgatttcctgcaaactggcggcgatggcgcctcaccggctgtcctcg 74 |||||||| || ||||| |||||||| ||||| || |||||||| ||| || | | |||| Sbjct: 382 tccatgggcgcgatgatatcctgcaagctggcagccatggcgccgcacaggatttgctcg 441 Query: 75 ctggcattgctgaacgtcaccggcggtgggatggagtgtttccccaaggtagatggacag 134 |||| ||||| || || || || ||||| | |||| ||||| ||| ||||||| ||| Sbjct: 442 ttggcgttgcttaatgttactggaggtggcttccagtgcttcccgaagttagatgggcag 501 Query: 135 atgctctccctcgcgttccggttcttaagggccagaactccagagcaaagagctctagtc 194 |||||||| || || ||||| ||||||||||| ||||||||||| |||||||||| || Sbjct: 502 atgctctcgcttgcattccgtttcttaagggcaagaactccagaagaaagagctctggta 561 Query: 195 gatttggaaacccactatacgaaggagtaccttgatgaggaagttgaatcctgcacaagg 254 |||||||||||||| ||||| ||||| || ||||||||| |||||| ||| ||||| ||| Sbjct: 562 gatttggaaacccattatacaaaggaatatcttgatgagaaagttggatcatgcacgagg 621 Query: 255 agagcgatcctgtataaggaatatgtgaaaggcatatcatctacagggatgcaatgtaat 314 ||| | ||||| ||| | ||||||||||| ||||||||||| ||||||||||| | ||| Sbjct: 622 agaacaatcctctatcaagaatatgtgaagggcatatcatcgacagggatgcagtctaac 681 Query: 315 tgcgggtttgaaggtcaaattaacgcatgctggactcacaaagtgacaactaaagaacta 374 || ||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||| Sbjct: 682 tgtgggtttgaaggtcaagttaatgcatgctggactcacaatatgacaactaaagaacta 741 Query: 375 gatacaattcgtgctgccggttttctagtttcagttattcacggaaggcatgatattatt 434 ||||||||||| |||||||||||||||||||||||||||| || ||| ||| |||||| Sbjct: 742 gatacaattcggtctgccggttttctagtttcagttattcatgggaggtctgacattatt 801 Query: 435 gcgcaagtatgtcatgcaaggcggcttgcacaaaggcttcttcctgttgctagaa 489 |||||| |||||||||| || || |||||| |||||||| ||||||||||||||| Sbjct: 802 gcgcaattatgtcatgcgagacgacttgcagaaaggcttattcctgttgctagaa 856
>dbj|AK071703.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023112L03, full insert sequence Length = 1561 Score = 379 bits (191), Expect = e-102 Identities = 404/475 (85%) Strand = Plus / Plus Query: 15 tccatgggtgccatgatttcctgcaaactggcggcgatggcgcctcaccggctgtcctcg 74 |||||||| || ||||| |||||||| ||||| || |||||||| ||| || | | |||| Sbjct: 528 tccatgggcgcgatgatatcctgcaagctggcagccatggcgccgcacaggatttgctcg 587 Query: 75 ctggcattgctgaacgtcaccggcggtgggatggagtgtttccccaaggtagatggacag 134 |||| ||||| || || || || ||||| | |||| ||||| ||| ||||||| ||| Sbjct: 588 ttggcgttgcttaatgttactggaggtggcttccagtgcttcccgaagttagatgggcag 647 Query: 135 atgctctccctcgcgttccggttcttaagggccagaactccagagcaaagagctctagtc 194 |||||||| || || ||||| ||||||||||| ||||||||||| |||||||||| || Sbjct: 648 atgctctcgcttgcattccgtttcttaagggcaagaactccagaagaaagagctctggta 707 Query: 195 gatttggaaacccactatacgaaggagtaccttgatgaggaagttgaatcctgcacaagg 254 |||||||||||||| ||||| ||||| || ||||||||| |||||| ||| ||||| ||| Sbjct: 708 gatttggaaacccattatacaaaggaatatcttgatgagaaagttggatcatgcacgagg 767 Query: 255 agagcgatcctgtataaggaatatgtgaaaggcatatcatctacagggatgcaatgtaat 314 ||| | ||||| ||| | ||||||||||| ||||||||||| ||||||||||| | ||| Sbjct: 768 agaacaatcctctatcaagaatatgtgaagggcatatcatcgacagggatgcagtctaac 827 Query: 315 tgcgggtttgaaggtcaaattaacgcatgctggactcacaaagtgacaactaaagaacta 374 || ||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||| Sbjct: 828 tgtgggtttgaaggtcaagttaatgcatgctggactcacaatatgacaactaaagaacta 887 Query: 375 gatacaattcgtgctgccggttttctagtttcagttattcacggaaggcatgatattatt 434 ||||||||||| |||||||||||||||||||||||||||| || ||| ||| |||||| Sbjct: 888 gatacaattcggtctgccggttttctagtttcagttattcatgggaggtctgacattatt 947 Query: 435 gcgcaagtatgtcatgcaaggcggcttgcacaaaggcttcttcctgttgctagaa 489 |||||| |||||||||| || || |||||| |||||||| ||||||||||||||| Sbjct: 948 gcgcaattatgtcatgcgagacgacttgcagaaaggcttattcctgttgctagaa 1002
>dbj|AK071306.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023088C20, full insert sequence Length = 1860 Score = 379 bits (191), Expect = e-102 Identities = 404/475 (85%) Strand = Plus / Plus Query: 15 tccatgggtgccatgatttcctgcaaactggcggcgatggcgcctcaccggctgtcctcg 74 |||||||| || ||||| |||||||| ||||| || |||||||| ||| || | | |||| Sbjct: 701 tccatgggcgcgatgatatcctgcaagctggcagccatggcgccgcacaggatttgctcg 760 Query: 75 ctggcattgctgaacgtcaccggcggtgggatggagtgtttccccaaggtagatggacag 134 |||| ||||| || || || || ||||| | |||| ||||| ||| ||||||| ||| Sbjct: 761 ttggcgttgcttaatgttactggaggtggcttccagtgcttcccgaagttagatgggcag 820 Query: 135 atgctctccctcgcgttccggttcttaagggccagaactccagagcaaagagctctagtc 194 |||||||| || || ||||| ||||||||||| ||||||||||| |||||||||| || Sbjct: 821 atgctctcgcttgcattccgtttcttaagggcaagaactccagaagaaagagctctggta 880 Query: 195 gatttggaaacccactatacgaaggagtaccttgatgaggaagttgaatcctgcacaagg 254 |||||||||||||| ||||| ||||| || ||||||||| |||||| ||| ||||| ||| Sbjct: 881 gatttggaaacccattatacaaaggaatatcttgatgagaaagttggatcatgcacgagg 940 Query: 255 agagcgatcctgtataaggaatatgtgaaaggcatatcatctacagggatgcaatgtaat 314 ||| | ||||| ||| | ||||||||||| ||||||||||| ||||||||||| | ||| Sbjct: 941 agaacaatcctctatcaagaatatgtgaagggcatatcatcgacagggatgcagtctaac 1000 Query: 315 tgcgggtttgaaggtcaaattaacgcatgctggactcacaaagtgacaactaaagaacta 374 || ||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||| Sbjct: 1001 tgtgggtttgaaggtcaagttaatgcatgctggactcacaatatgacaactaaagaacta 1060 Query: 375 gatacaattcgtgctgccggttttctagtttcagttattcacggaaggcatgatattatt 434 ||||||||||| |||||||||||||||||||||||||||| || ||| ||| |||||| Sbjct: 1061 gatacaattcggtctgccggttttctagtttcagttattcatgggaggtctgacattatt 1120 Query: 435 gcgcaagtatgtcatgcaaggcggcttgcacaaaggcttcttcctgttgctagaa 489 |||||| |||||||||| || || |||||| |||||||| ||||||||||||||| Sbjct: 1121 gcgcaattatgtcatgcgagacgacttgcagaaaggcttattcctgttgctagaa 1175
>dbj|AK060785.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-033-D03, full insert sequence Length = 1090 Score = 367 bits (185), Expect = 2e-98 Identities = 332/381 (87%) Strand = Plus / Plus Query: 109 agtgtttccccaaggtagatggacagatgctctccctcgcgttccggttcttaagggcca 168 |||| ||||| ||| ||||||| ||||||||||| || || ||||| ||||||||||| | Sbjct: 25 agtgcttcccgaagttagatgggcagatgctctcgcttgcattccgtttcttaagggcaa 84 Query: 169 gaactccagagcaaagagctctagtcgatttggaaacccactatacgaaggagtaccttg 228 |||||||||| |||||||||| || |||||||||||||| ||||| ||||| || |||| Sbjct: 85 gaactccagaagaaagagctctggtagatttggaaacccattatacaaaggaatatcttg 144 Query: 229 atgaggaagttgaatcctgcacaaggagagcgatcctgtataaggaatatgtgaaaggca 288 ||||| |||||| ||| ||||| |||||| | ||||| ||| | ||||||||||| |||| Sbjct: 145 atgagaaagttggatcatgcacgaggagaacaatcctctatcaagaatatgtgaagggca 204 Query: 289 tatcatctacagggatgcaatgtaattgcgggtttgaaggtcaaattaacgcatgctgga 348 ||||||| ||||||||||| | ||| || ||||||||||||||| |||| |||||||||| Sbjct: 205 tatcatcgacagggatgcagtctaactgtgggtttgaaggtcaagttaatgcatgctgga 264 Query: 349 ctcacaaagtgacaactaaagaactagatacaattcgtgctgccggttttctagtttcag 408 ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 265 ctcacaatatgacaactaaagaactagatacaattcggtctgccggttttctagtttcag 324 Query: 409 ttattcacggaaggcatgatattattgcgcaagtatgtcatgcaaggcggcttgcacaaa 468 ||||||| || ||| ||| |||||||||||| |||||||||| || || |||||| ||| Sbjct: 325 ttattcatgggaggtctgacattattgcgcaattatgtcatgcgagacgacttgcagaaa 384 Query: 469 ggcttcttcctgttgctagaa 489 ||||| ||||||||||||||| Sbjct: 385 ggcttattcctgttgctagaa 405
>gb|AC104713.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1362_G11, complete sequence Length = 115808 Score = 192 bits (97), Expect = 7e-46 Identities = 133/145 (91%) Strand = Plus / Minus Query: 271 aggaatatgtgaaaggcatatcatctacagggatgcaatgtaattgcgggtttgaaggtc 330 ||||||||||||| ||||||||||| ||||||||||| | ||| || ||||||||||||| Sbjct: 89331 aggaatatgtgaagggcatatcatcgacagggatgcagtctaactgtgggtttgaaggtc 89272 Query: 331 aaattaacgcatgctggactcacaaagtgacaactaaagaactagatacaattcgtgctg 390 || |||| ||||||||||||||||| |||||||||||||||||||||||||||| ||| Sbjct: 89271 aagttaatgcatgctggactcacaatatgacaactaaagaactagatacaattcggtctg 89212 Query: 391 ccggttttctagtttcagttattca 415 ||||||||||||||||||||||||| Sbjct: 89211 ccggttttctagtttcagttattca 89187 Score = 95.6 bits (48), Expect = 1e-16 Identities = 84/96 (87%) Strand = Plus / Minus Query: 124 tagatggacagatgctctccctcgcgttccggttcttaagggccagaactccagagcaaa 183 ||||||| ||||||||||| || || ||||| ||||||||||| ||||||||||| ||| Sbjct: 90027 tagatgggcagatgctctcgcttgcattccgtttcttaagggcaagaactccagaagaaa 89968 Query: 184 gagctctagtcgatttggaaacccactatacgaagg 219 ||||||| || |||||||||||||| ||||| |||| Sbjct: 89967 gagctctggtagatttggaaacccattatacaaagg 89932 Score = 73.8 bits (37), Expect = 5e-10 Identities = 55/61 (90%) Strand = Plus / Minus Query: 429 attattgcgcaagtatgtcatgcaaggcggcttgcacaaaggcttcttcctgttgctaga 488 |||||||||||| |||||||||| || || |||||| |||||||| |||||||||||||| Sbjct: 89077 attattgcgcaattatgtcatgcgagacgacttgcagaaaggcttattcctgttgctaga 89018 Query: 489 a 489 | Sbjct: 89017 a 89017
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 192 bits (97), Expect = 7e-46 Identities = 133/145 (91%) Strand = Plus / Minus Query: 271 aggaatatgtgaaaggcatatcatctacagggatgcaatgtaattgcgggtttgaaggtc 330 ||||||||||||| ||||||||||| ||||||||||| | ||| || ||||||||||||| Sbjct: 26708334 aggaatatgtgaagggcatatcatcgacagggatgcagtctaactgtgggtttgaaggtc 26708275 Query: 331 aaattaacgcatgctggactcacaaagtgacaactaaagaactagatacaattcgtgctg 390 || |||| ||||||||||||||||| |||||||||||||||||||||||||||| ||| Sbjct: 26708274 aagttaatgcatgctggactcacaatatgacaactaaagaactagatacaattcggtctg 26708215 Query: 391 ccggttttctagtttcagttattca 415 ||||||||||||||||||||||||| Sbjct: 26708214 ccggttttctagtttcagttattca 26708190 Score = 95.6 bits (48), Expect = 1e-16 Identities = 84/96 (87%) Strand = Plus / Minus Query: 124 tagatggacagatgctctccctcgcgttccggttcttaagggccagaactccagagcaaa 183 ||||||| ||||||||||| || || ||||| ||||||||||| ||||||||||| ||| Sbjct: 26709030 tagatgggcagatgctctcgcttgcattccgtttcttaagggcaagaactccagaagaaa 26708971 Query: 184 gagctctagtcgatttggaaacccactatacgaagg 219 ||||||| || |||||||||||||| ||||| |||| Sbjct: 26708970 gagctctggtagatttggaaacccattatacaaagg 26708935 Score = 73.8 bits (37), Expect = 5e-10 Identities = 55/61 (90%) Strand = Plus / Minus Query: 429 attattgcgcaagtatgtcatgcaaggcggcttgcacaaaggcttcttcctgttgctaga 488 |||||||||||| |||||||||| || || |||||| |||||||| |||||||||||||| Sbjct: 26708080 attattgcgcaattatgtcatgcgagacgacttgcagaaaggcttattcctgttgctaga 26708021 Query: 489 a 489 | Sbjct: 26708020 a 26708020
>ref|XM_522861.1| PREDICTED: Pan troglodytes chromosome 14 open reading frame 101 (LOC467464), mRNA Length = 2196 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 64 ggctgtcctcgctggcattg 83 |||||||||||||||||||| Sbjct: 1164 ggctgtcctcgctggcattg 1183
>ref|NM_001035101.1| Bos taurus thioredoxin-like (TXNL2), mRNA Length = 1211 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 364 ctaaagaactagatacaatt 383 |||||||||||||||||||| Sbjct: 666 ctaaagaactagatacaatt 685
>gb|BT021690.1| Bos taurus thioredoxin-like 2 (TXNL2), mRNA, complete cds Length = 1211 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 364 ctaaagaactagatacaatt 383 |||||||||||||||||||| Sbjct: 666 ctaaagaactagatacaatt 685
>emb|CT025272.2| Xenopus tropicalis finished cDNA, clone TEgg137j20 Length = 2348 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 270 aaggaatatgtgaaaggcat 289 |||||||||||||||||||| Sbjct: 290 aaggaatatgtgaaaggcat 309
>ref|XM_810332.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053511577.80) partial mRNA Length = 705 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 139 tctccctcgcgttccggttc 158 |||||||||||||||||||| Sbjct: 315 tctccctcgcgttccggttc 334
>gb|AC108945.4| Mus musculus BAC clone RP23-119J11 from 15, complete sequence Length = 200294 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 340 catgctggactcacaaagtg 359 |||||||||||||||||||| Sbjct: 33686 catgctggactcacaaagtg 33705
>gb|AC110374.3| Mus musculus BAC clone RP23-293P18 from 15, complete sequence Length = 199869 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 340 catgctggactcacaaagtg 359 |||||||||||||||||||| Sbjct: 28656 catgctggactcacaaagtg 28637
>emb|CR352255.9| Zebrafish DNA sequence from clone CH211-118E10 in linkage group 24, complete sequence Length = 161221 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 395 ttttctagtttcagttattc 414 |||||||||||||||||||| Sbjct: 33227 ttttctagtttcagttattc 33208
>emb|CR361560.10| Zebrafish DNA sequence from clone CH211-122G18 in linkage group 24, complete sequence Length = 184660 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 395 ttttctagtttcagttattc 414 |||||||||||||||||||| Sbjct: 89445 ttttctagtttcagttattc 89426
>ref|NM_001004870.1| Xenopus tropicalis MGC79624 protein (MGC79624), mRNA Length = 4077 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 270 aaggaatatgtgaaaggcat 289 |||||||||||||||||||| Sbjct: 314 aaggaatatgtgaaaggcat 333
>gb|AC124420.4| Mus musculus BAC clone RP24-322N8 from chromosome 12, complete sequence Length = 164950 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 415 acggaaggcatgatattatt 434 |||||||||||||||||||| Sbjct: 108577 acggaaggcatgatattatt 108558
>gb|AC020595.7| Homo sapiens BAC clone RP11-358M9 from 2, complete sequence Length = 189219 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 223 accttgatgaggaagttgaa 242 |||||||||||||||||||| Sbjct: 28163 accttgatgaggaagttgaa 28182
>emb|BX000428.10| Mouse DNA sequence from clone RP23-474G7 on chromosome X, complete sequence Length = 162246 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 350 tcacaaagtgacaactaaag 369 |||||||||||||||||||| Sbjct: 97358 tcacaaagtgacaactaaag 97339
>ref|XM_552209.1| Anopheles gambiae str. PEST ENSANGP00000029550 (ENSANGG00000024416), partial mRNA Length = 333 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 170 aactccagagcaaagagctc 189 |||||||||||||||||||| Sbjct: 280 aactccagagcaaagagctc 261
>gb|BC075104.1| Xenopus tropicalis MGC79624 protein, mRNA (cDNA clone MGC:79624 IMAGE:6979823), complete cds Length = 4077 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 270 aaggaatatgtgaaaggcat 289 |||||||||||||||||||| Sbjct: 314 aaggaatatgtgaaaggcat 333
>gb|AY609618.1| Sus scrofa clone Clu_21370.scr.msk.p1.Contig5, mRNA sequence Length = 1224 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 364 ctaaagaactagatacaatt 383 |||||||||||||||||||| Sbjct: 668 ctaaagaactagatacaatt 687 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,606,130 Number of Sequences: 3902068 Number of extensions: 3606130 Number of successful extensions: 62662 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 22 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 62609 Number of HSP's gapped (non-prelim): 53 length of query: 489 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 467 effective length of database: 17,147,199,772 effective search space: 8007742293524 effective search space used: 8007742293524 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)