ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal14h20 |
|---|---|
| Clone Library Name | barley_pub |
>THF1_ORYSA (Q84PB7) Protein THYLAKOID FORMATION1, chloroplast precursor| Length = 287 Score = 139 bits (349), Expect(2) = 1e-50 Identities = 74/101 (73%), Positives = 80/101 (79%), Gaps = 1/101 (0%) Frame = +1 Query: 103 MAAISSLPFAALRRAADWRPSTATAAVSV-SGGVMLNXXXXXXXXXXXXCVITAGDIPPT 279 MAAISSLPFAALRRAAD RPSTA AA +G V+L+ CV TAGD+PPT Sbjct: 1 MAAISSLPFAALRRAADCRPSTAAAAAGAGAGAVVLSVRPRRGSRSVVRCVATAGDVPPT 60 Query: 280 VADTKMNFLKSYKRPIPSIYSTVLQELLVQQHLMRYKSTYQ 402 VA+TKMNFLKSYKRPI SIYSTVLQELLVQQHLMRYK+TYQ Sbjct: 61 VAETKMNFLKSYKRPILSIYSTVLQELLVQQHLMRYKTTYQ 101 Score = 80.5 bits (197), Expect(2) = 1e-50 Identities = 37/44 (84%), Positives = 40/44 (90%) Frame = +2 Query: 389 KVRIKYDPVFALGFVTVYDQLMEGYPSNEDRDAIFKSYVTALNE 520 K +YD VFALGFVTVYDQLMEGYPSNEDRDAIFK+Y+TALNE Sbjct: 97 KTTYQYDAVFALGFVTVYDQLMEGYPSNEDRDAIFKAYITALNE 140
>THF1_ARATH (Q9SKT0) Protein THYLAKOID FORMATION1, chloroplast precursor| Length = 300 Score = 79.7 bits (195), Expect(2) = 4e-32 Identities = 50/105 (47%), Positives = 63/105 (60%), Gaps = 7/105 (6%) Frame = +1 Query: 109 AISSLPFAALRRA------ADWRPSTATAAVSVS-GGVMLNXXXXXXXXXXXXCVITAGD 267 AISSL F AL ++ A RP + + + LN +TA D Sbjct: 5 AISSLSFPALGQSDKISNFASSRPLASAIRICTKFSRLSLNSRSTSKSLIHCMSNVTA-D 63 Query: 268 IPPTVADTKMNFLKSYKRPIPSIYSTVLQELLVQQHLMRYKSTYQ 402 +PP V++TK FLK+YKRPIPSIY+TVLQEL+VQQHLMRYK TY+ Sbjct: 64 VPP-VSETKSKFLKAYKRPIPSIYNTVLQELIVQQHLMRYKKTYR 107 Score = 77.8 bits (190), Expect(2) = 4e-32 Identities = 35/44 (79%), Positives = 40/44 (90%) Frame = +2 Query: 389 KVRIKYDPVFALGFVTVYDQLMEGYPSNEDRDAIFKSYVTALNE 520 K +YDPVFALGFVTVYDQLMEGYPS++DRDAIFK+Y+ ALNE Sbjct: 103 KKTYRYDPVFALGFVTVYDQLMEGYPSDQDRDAIFKAYIEALNE 146
>THF1_SOLTU (Q7XAB8) Protein THYLAKOID FORMATION1, chloroplast precursor| Length = 293 Score = 79.0 bits (193), Expect(2) = 9e-31 Identities = 45/110 (40%), Positives = 68/110 (61%), Gaps = 10/110 (9%) Frame = +1 Query: 103 MAAISSLPFAALRRAADWRPSTATAAVSVS----------GGVMLNXXXXXXXXXXXXCV 252 MAA++S+ F+A+ ++A+ R S+ +++ S+ V + Sbjct: 1 MAAVTSVSFSAITQSAE-RKSSVSSSRSIDTFRFRSNFSFDSVNVRSSNSTSRFVVHCTS 59 Query: 253 ITAGDIPPTVADTKMNFLKSYKRPIPSIYSTVLQELLVQQHLMRYKSTYQ 402 +A D+P TVADTK+ FL +YKRPIP++Y+TVLQEL+VQQHL RYK +YQ Sbjct: 60 SSAADLP-TVADTKLKFLTAYKRPIPTVYNTVLQELIVQQHLTRYKKSYQ 108 Score = 73.9 bits (180), Expect(2) = 9e-31 Identities = 34/44 (77%), Positives = 38/44 (86%) Frame = +2 Query: 389 KVRIKYDPVFALGFVTVYDQLMEGYPSNEDRDAIFKSYVTALNE 520 K +YDPVFALGFVTVYDQLMEGYPS EDR+AIFK+Y+ AL E Sbjct: 104 KKSYQYDPVFALGFVTVYDQLMEGYPSEEDRNAIFKAYIEALKE 147
>THF1_SYNEL (Q8DJT8) Protein thf1| Length = 222 Score = 46.2 bits (108), Expect(2) = 8e-12 Identities = 21/40 (52%), Positives = 25/40 (62%) Frame = +2 Query: 392 VRIKYDPVFALGFVTVYDQLMEGYPSNEDRDAIFKSYVTA 511 V +Y P+FALG VT +DQ MEGY DRD IF + A Sbjct: 44 VDFRYSPLFALGVVTAFDQFMEGYQPEGDRDRIFHALCVA 83 Score = 42.7 bits (99), Expect(2) = 8e-12 Identities = 20/38 (52%), Positives = 27/38 (71%) Frame = +1 Query: 271 PPTVADTKMNFLKSYKRPIPSIYSTVLQELLVQQHLMR 384 P TV+DTK F ++ RPI SIY ++ELLV+ HL+R Sbjct: 4 PRTVSDTKRAFYAAHTRPIHSIYRRFIEELLVEIHLLR 41
>THF1_SYNJB (P0C1D1) Protein thf1| Length = 239 Score = 46.6 bits (109), Expect(2) = 3e-11 Identities = 22/38 (57%), Positives = 26/38 (68%) Frame = +2 Query: 404 YDPVFALGFVTVYDQLMEGYPSNEDRDAIFKSYVTALN 517 YDP FALG VT+YD LME Y E R+AIF + AL+ Sbjct: 48 YDPFFALGLVTLYDGLMEAYHPPEQREAIFNALCKALH 85 Score = 40.4 bits (93), Expect(2) = 3e-11 Identities = 18/41 (43%), Positives = 27/41 (65%) Frame = +1 Query: 277 TVADTKMNFLKSYKRPIPSIYSTVLQELLVQQHLMRYKSTY 399 T++ TK F +Y RPI ++Y V++ELLV+ HL ST+ Sbjct: 6 TLSATKAAFFSAYPRPINAVYRRVVEELLVELHLTTVNSTF 46
>THF1_GLOVI (Q7NKS7) Protein thf1| Length = 228 Score = 45.4 bits (106), Expect(2) = 5e-11 Identities = 21/43 (48%), Positives = 27/43 (62%) Frame = +2 Query: 386 TKVRIKYDPVFALGFVTVYDQLMEGYPSNEDRDAIFKSYVTAL 514 T ++DP+FA G +T Y LMEGY E RDAI ++ TAL Sbjct: 42 TNQDFRHDPLFATGLLTAYQALMEGYTPVEQRDAILRALCTAL 84 Score = 40.8 bits (94), Expect(2) = 5e-11 Identities = 18/35 (51%), Positives = 25/35 (71%) Frame = +1 Query: 277 TVADTKMNFLKSYKRPIPSIYSTVLQELLVQQHLM 381 TV+D+K F +Y RP+ SIY V+ ELLV+ HL+ Sbjct: 6 TVSDSKRAFFAAYPRPVNSIYRRVIDELLVEVHLL 40
>THF1_SYNJA (Q2JSQ3) Protein thf1| Length = 239 Score = 47.4 bits (111), Expect(2) = 2e-10 Identities = 22/38 (57%), Positives = 26/38 (68%) Frame = +2 Query: 404 YDPVFALGFVTVYDQLMEGYPSNEDRDAIFKSYVTALN 517 YDP FALG VT+YD LME Y E R+AIF + AL+ Sbjct: 48 YDPFFALGLVTLYDSLMEAYHPPEQREAIFNALCKALH 85 Score = 37.0 bits (84), Expect(2) = 2e-10 Identities = 17/41 (41%), Positives = 25/41 (60%) Frame = +1 Query: 277 TVADTKMNFLKSYKRPIPSIYSTVLQELLVQQHLMRYKSTY 399 T++ TK F +Y RPI + Y V++ELLV+ HL S + Sbjct: 6 TLSATKAAFFSAYPRPINAAYRRVVEELLVELHLTTVNSAF 46
>THF1_ANASP (Q8YZ41) Protein thf1| Length = 233 Score = 43.9 bits (102), Expect(2) = 4e-10 Identities = 17/43 (39%), Positives = 28/43 (65%) Frame = +2 Query: 392 VRIKYDPVFALGFVTVYDQLMEGYPSNEDRDAIFKSYVTALNE 520 V Y+P++ALG VT +D+ MEGY D+++IF + A+ + Sbjct: 44 VDFSYNPIYALGVVTTFDRFMEGYQPERDKESIFSAICQAVEQ 86 Score = 39.3 bits (90), Expect(2) = 4e-10 Identities = 17/35 (48%), Positives = 25/35 (71%) Frame = +1 Query: 277 TVADTKMNFLKSYKRPIPSIYSTVLQELLVQQHLM 381 TV+DTK F + RPI +IY V++EL+V+ HL+ Sbjct: 6 TVSDTKRTFYALHTRPINTIYRRVVEELMVEMHLL 40
>THF1_ANAVT (Q3M4B2) Protein thf1| Length = 233 Score = 42.7 bits (99), Expect(2) = 9e-10 Identities = 16/43 (37%), Positives = 28/43 (65%) Frame = +2 Query: 392 VRIKYDPVFALGFVTVYDQLMEGYPSNEDRDAIFKSYVTALNE 520 V Y+P++ALG VT +D+ M+GY D+++IF + A+ + Sbjct: 44 VDFSYNPIYALGVVTTFDRFMQGYQPERDKESIFSAICQAVEQ 86 Score = 39.3 bits (90), Expect(2) = 9e-10 Identities = 17/35 (48%), Positives = 25/35 (71%) Frame = +1 Query: 277 TVADTKMNFLKSYKRPIPSIYSTVLQELLVQQHLM 381 TV+DTK F + RPI +IY V++EL+V+ HL+ Sbjct: 6 TVSDTKRTFYALHTRPINTIYRRVVEELMVEMHLL 40
>THF1_SYNY3 (P73956) Protein thf1| Length = 240 Score = 40.8 bits (94), Expect(2) = 7e-09 Identities = 18/35 (51%), Positives = 23/35 (65%) Frame = +1 Query: 277 TVADTKMNFLKSYKRPIPSIYSTVLQELLVQQHLM 381 TV+D K F Y RPI SIY ++ELLV+ HL+ Sbjct: 6 TVSDAKRKFFTHYSRPISSIYRRFVEELLVEMHLL 40 Score = 38.1 bits (87), Expect(2) = 7e-09 Identities = 16/32 (50%), Positives = 21/32 (65%) Frame = +2 Query: 404 YDPVFALGFVTVYDQLMEGYPSNEDRDAIFKS 499 YDP+FALG VT ++ M+GY E AIF + Sbjct: 48 YDPIFALGIVTSFNSFMQGYQPAEQLPAIFNA 79
>THF1_SYNP7 (Q31MY4) Protein thf1| Length = 254 Score = 42.0 bits (97), Expect(2) = 7e-08 Identities = 18/42 (42%), Positives = 29/42 (69%) Frame = +1 Query: 274 PTVADTKMNFLKSYKRPIPSIYSTVLQELLVQQHLMRYKSTY 399 PTV+D+K F +Y RPI +Y V++ELLV+ HL+ +++ Sbjct: 5 PTVSDSKRAFYAAYPRPINPLYRRVVEELLVEIHLLSVNTSF 46 Score = 33.5 bits (75), Expect(2) = 7e-08 Identities = 15/39 (38%), Positives = 21/39 (53%) Frame = +2 Query: 404 YDPVFALGFVTVYDQLMEGYPSNEDRDAIFKSYVTALNE 520 YDP+FALG VT +D M Y E +F + A+ + Sbjct: 48 YDPLFALGVVTAFDSFMSSYRPIEAVGPLFTALTQAVRQ 86
>THF1_SYNP6 (Q5N664) Protein thf1| Length = 254 Score = 42.0 bits (97), Expect(2) = 7e-08 Identities = 18/42 (42%), Positives = 29/42 (69%) Frame = +1 Query: 274 PTVADTKMNFLKSYKRPIPSIYSTVLQELLVQQHLMRYKSTY 399 PTV+D+K F +Y RPI +Y V++ELLV+ HL+ +++ Sbjct: 5 PTVSDSKRAFYAAYPRPINPLYRRVVEELLVEIHLLSVNTSF 46 Score = 33.5 bits (75), Expect(2) = 7e-08 Identities = 15/39 (38%), Positives = 21/39 (53%) Frame = +2 Query: 404 YDPVFALGFVTVYDQLMEGYPSNEDRDAIFKSYVTALNE 520 YDP+FALG VT +D M Y E +F + A+ + Sbjct: 48 YDPLFALGVVTAFDSFMSSYRPIEAVGPLFTALTQAVRQ 86
>THF1_SYNSC (Q3AJN7) Protein thf1| Length = 215 Score = 33.9 bits (76), Expect(2) = 2e-04 Identities = 14/42 (33%), Positives = 27/42 (64%) Frame = +1 Query: 277 TVADTKMNFLKSYKRPIPSIYSTVLQELLVQQHLMRYKSTYQ 402 T+AD+K F +++ I +Y + ELLV+ HL+ ++S ++ Sbjct: 6 TIADSKRAFHQAFPHVIAPLYRRLADELLVELHLLSHQSRFE 47 Score = 30.0 bits (66), Expect(2) = 2e-04 Identities = 11/35 (31%), Positives = 22/35 (62%) Frame = +2 Query: 395 RIKYDPVFALGFVTVYDQLMEGYPSNEDRDAIFKS 499 R + + +F++G TV+D ++GY DA+F++ Sbjct: 45 RFEANELFSVGLCTVFDTFIKGYRPEAQTDALFRA 79
>THF1_SYNS9 (Q3AY05) Protein thf1| Length = 215 Score = 34.3 bits (77), Expect(2) = 0.002 Identities = 14/42 (33%), Positives = 28/42 (66%) Frame = +1 Query: 277 TVADTKMNFLKSYKRPIPSIYSTVLQELLVQQHLMRYKSTYQ 402 T+AD+K F +++ I +Y + ELLV+ HL+ ++S+++ Sbjct: 6 TIADSKRAFHQAFPHVIAPLYRRLADELLVELHLLSHQSSFK 47 Score = 26.2 bits (56), Expect(2) = 0.002 Identities = 11/25 (44%), Positives = 14/25 (56%) Frame = +2 Query: 401 KYDPVFALGFVTVYDQLMEGYPSNE 475 K P+FA+G TV+D GY E Sbjct: 47 KTTPLFAVGLCTVFDTFSAGYRPEE 71
>THF1_SYNPX (Q7U6N6) Protein thf1| Length = 212 Score = 37.0 bits (84), Expect(2) = 0.003 Identities = 15/42 (35%), Positives = 28/42 (66%) Frame = +1 Query: 277 TVADTKMNFLKSYKRPIPSIYSTVLQELLVQQHLMRYKSTYQ 402 T+AD+K F +++ I +Y + ELLV+ HL+ +++T+Q Sbjct: 6 TIADSKRAFHQAFPHVIAPLYRRIADELLVELHLLSHQATFQ 47 Score = 22.7 bits (47), Expect(2) = 0.003 Identities = 9/29 (31%), Positives = 17/29 (58%) Frame = +2 Query: 413 VFALGFVTVYDQLMEGYPSNEDRDAIFKS 499 +FA+G TV+++ +GY E A+ + Sbjct: 51 LFAVGLKTVFERFTQGYRPMEHPAALLSA 79
>THF1_PROMT (Q46L45) Protein thf1| Length = 199 Score = 37.4 bits (85), Expect = 0.025 Identities = 15/42 (35%), Positives = 28/42 (66%) Frame = +1 Query: 277 TVADTKMNFLKSYKRPIPSIYSTVLQELLVQQHLMRYKSTYQ 402 T++D+K +F K + IP+IY + ELLV+ HL+ ++ ++ Sbjct: 6 TISDSKSDFHKEFPYVIPAIYRKLADELLVELHLLSHQKNFK 47
>THF1_PROMM (Q7V7R3) Protein thf1| Length = 243 Score = 34.7 bits (78), Expect(2) = 0.028 Identities = 15/41 (36%), Positives = 24/41 (58%) Frame = +1 Query: 277 TVADTKMNFLKSYKRPIPSIYSTVLQELLVQQHLMRYKSTY 399 T+AD+K F + IPS+Y ELLV+ HL+ ++ + Sbjct: 6 TIADSKRAFNHDFPHVIPSLYRRTTDELLVELHLLSHQKHF 46 Score = 21.6 bits (44), Expect(2) = 0.028 Identities = 8/19 (42%), Positives = 11/19 (57%) Frame = +2 Query: 407 DPVFALGFVTVYDQLMEGY 463 D +FA+G V+D GY Sbjct: 49 DALFAIGLSQVFDVFTSGY 67
>AKAP2_HUMAN (Q9Y2D5) A-kinase anchor protein 2 (Protein kinase A-anchoring| protein 2) (PRKA2) (AKAP-2) Length = 1103 Score = 30.4 bits (67), Expect = 3.1 Identities = 19/62 (30%), Positives = 28/62 (45%) Frame = -1 Query: 278 VGGISPAVMTQRTTEREPRRALALSMTPPETLTAAVAVDGLQSAARRSAANGSDDMAAMG 99 VGG+SP V T+ EP A PP + + D + A R + + S A+G Sbjct: 318 VGGLSPPV--HEATQPEPTERTASRQAPPHIELSNSSPDPMAEAERTNGHSPSQPRDALG 375 Query: 98 ES 93 +S Sbjct: 376 DS 377
>HXA4_HUMAN (Q00056) Homeobox protein Hox-A4 (Hox-1D) (Hox-1.4)| Length = 320 Score = 29.3 bits (64), Expect = 6.9 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%) Frame = +3 Query: 9 APVNYPFALTGGVDHP-PPYPVREPVAARGLSHGGH 113 A YP+ GG PP P + P A+G +HG H Sbjct: 96 ADTAYPYGYRGGASPGRPPQPEQPPAQAKGPAHGLH 131
>SN_HUMAN (Q9BZZ2) Sialoadhesin precursor (Sialic acid-binding Ig-like| lectin-1) (Siglec-1) (CD169 antigen) Length = 1709 Score = 29.3 bits (64), Expect = 6.9 Identities = 13/19 (68%), Positives = 15/19 (78%) Frame = +3 Query: 69 VREPVAARGLSHGGHIVAS 125 V EP+A LSHGGHI+AS Sbjct: 436 VSEPLATLVLSHGGHILAS 454
>PFTB_CAEEL (P41992) Probable protein farnesyltransferase beta subunit (EC| 2.5.1.58) (CAAX farnesyltransferase beta subunit) (RAS proteins prenyltransferase beta) (FTase-beta) Length = 335 Score = 29.3 bits (64), Expect = 6.9 Identities = 16/43 (37%), Positives = 20/43 (46%) Frame = +3 Query: 99 SHGGHIVASVRCTAPSGRLEAVDGDCRGERLRWRHAQREGSAG 227 SH G I V A +GRL+ +D D E L +R G G Sbjct: 195 SHSGQIYCCVGALAIAGRLDEIDRDRTAEWLAFRQCDSGGLNG 237
>HMDH1_ORYSA (P48019) 3-hydroxy-3-methylglutaryl-coenzyme A reductase 1 (EC| 1.1.1.34) (HMG-CoA reductase 1) Length = 509 Score = 28.9 bits (63), Expect = 9.0 Identities = 28/69 (40%), Positives = 31/69 (44%), Gaps = 7/69 (10%) Frame = +3 Query: 57 PPYPVREPVAARGLSHGG--HIVASVRCTA-PSGRLEAVDGDC-RGERLR---WRHAQRE 215 PP P G+ G IVA+V A PS RLE+ GDC R RLR R Sbjct: 77 PPEPAPMHGHGGGMMEGDDEEIVAAVASGALPSHRLESRLGDCRRAARLRREALRRVTGR 136 Query: 216 GSAGLTFGG 242 G GL F G Sbjct: 137 GVEGLPFDG 145 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 79,109,405 Number of Sequences: 219361 Number of extensions: 1666270 Number of successful extensions: 5738 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 5475 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5735 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3985467738 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
