ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | baal14e10 |
|---|---|
| Clone Library Name | barley_pub |
>gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mRNA, complete cds Length = 1709 Score = 841 bits (424), Expect = 0.0 Identities = 440/444 (99%), Gaps = 1/444 (0%) Strand = Plus / Plus Query: 8 ccagcacagccgcgcgcatccaccgttgctagcaaggtcgaccaagcagcacagagatgg 67 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 87 ccagcacagccgcgcgcatccaccgttg-tagcaaggtcgaccaagcagcacagagatgg 145 Query: 68 ctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcctcggga 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 146 ctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcctcggga 205 Query: 128 agaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctccaaggcca 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 206 agaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctccaaggcca 265 Query: 188 acaggttcacagtcatggcagcggagaacatcgacgagaagaggaacaccgacaagtgga 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 266 acaggttcacagtcatggcagcggagaacatcgacgagaagaggaacaccgacaagtgga 325 Query: 248 agggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaagggcatcg 307 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 326 agggtcttgctaccgatatctccgacgaccagcaggacatcaccagagggaagggcatcg 385 Query: 308 tggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcagctcct 367 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 386 tggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcagctcct 445 Query: 368 acgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggaggcttct 427 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 446 acgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggaggcttct 505 Query: 428 acatcgctcctgctttcatggaca 451 |||||||||||||||||||||||| Sbjct: 506 acatcgctcctgctttcatggaca 529
>gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA Length = 1643 Score = 761 bits (384), Expect = 0.0 Identities = 434/450 (96%), Gaps = 2/450 (0%) Strand = Plus / Plus Query: 2 tgatnaccagcacagccgcgcgcatccaccgttgctagcaaggtcgaccaagcagcacag 61 |||| |||||||||||||||| |||||||| ||||||||||||||| |||||||||||| Sbjct: 2 tgatcaccagcacagccgcgc--atccaccgctgctagcaaggtcgagcaagcagcacag 59 Query: 62 agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 121 ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| Sbjct: 60 agatggctgctgccttctcctccaccgtcggtgccccggcttctacgccgaccaacttcc 119 Query: 122 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 181 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 120 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 179 Query: 182 aggccaacaggttcacagtcatggcagcggagaacatcgacgagaagaggaacaccgaca 241 |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| Sbjct: 180 aggccaacaggttcacggtcatggcagcggaaaacatcgacgagaagaggaacaccgaca 239 Query: 242 agtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaagg 301 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 240 agtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaagg 299 Query: 302 gcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctca 361 ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 300 gcatcgtggactccctcttccaggcgcccactggcgacggcacccacgaggccgtcctca 359 Query: 362 gctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggag 421 |||| |||||||||||||||||||| || ||||||||||||||||||||||||||||| Sbjct: 360 gctcatacgagtacgtcagccagggactcaagaagtacgacttcgacaacaccatgggag 419 Query: 422 gcttctacatcgctcctgctttcatggaca 451 |||||||||||||||||||||||||||||| Sbjct: 420 gcttctacatcgctcctgctttcatggaca 449
>gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5-bisphosphate carboxylase activase (RcaB) gene, complete cds; and ribulose 1,5-bisphosphate carboxylase activase (RcaA) gene, alternatively spliced, complete cds Length = 8766 Score = 684 bits (345), Expect = 0.0 Identities = 351/353 (99%) Strand = Plus / Plus Query: 99 ggcttctacgccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgt 158 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5518 ggcttctacgccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgt 5577 Query: 159 gaactaccatggcaagagctccaaggccaacaggttcacagtcatggcagcggagaacat 218 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5578 gaactaccatggcaagagctccaaggccaacaggttcacagtcatggcagcggagaacat 5637 Query: 219 cgacgagaagaggaacaccgacaagtggaagggtcttgcgtacgatatctccgacgacca 278 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5638 cgacgagaagaggaacaccgacaagtggaagggtcttgcgtacgatatctccgacgacca 5697 Query: 279 gcaggacatcaccagagggaagggcatcgtggactcgctcttccaggcgcccacgggcga 338 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 5698 gcaggacatcaccagagggaagggcatcgtggactcgctcttccaggcgcccacggggca 5757 Query: 339 cggcacccacgaggccgtcctcagctcctacgagtacgtcagccagggcctgcggaagta 398 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5758 cggcacccacgaggccgtcctcagctcctacgagtacgtcagccagggcctgcggaagta 5817 Query: 399 cgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggaca 451 ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5818 cgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggaca 5870 Score = 232 bits (117), Expect = 8e-58 Identities = 186/209 (88%) Strand = Plus / Plus Query: 243 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 302 |||||||||||| || ||||| ||||| |||||||||||||||||||| | ||||| || Sbjct: 2939 gtggaagggtctggcctacgacatctcggacgaccagcaggacatcactcgggggaaagg 2998 Query: 303 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcag 362 |||||||||||| || |||||||| |||| |||||||||||||||||||||| |||| || Sbjct: 2999 catcgtggactccctgttccaggcccccatgggcgacggcacccacgaggccatcctaag 3058 Query: 363 ctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggagg 422 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || Sbjct: 3059 ctcctacgagtacatcagccagggcctgcggaagtacgacttcgacaacaccatggacgg 3118 Query: 423 cttctacatcgctcctgctttcatggaca 451 | |||||||| || || |||||||||| Sbjct: 3119 gctgtacatcgcgccggcattcatggaca 3147 Score = 174 bits (88), Expect = 2e-40 Identities = 97/99 (97%), Gaps = 1/99 (1%) Strand = Plus / Plus Query: 2 tgatnaccagcacagccgcgcgcatccaccgttgctagcaaggtcgaccaagcagcacag 61 |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 5301 tgatcaccagcacagccgcgcgcatccaccgttg-tagcaaggtcgaccaagcagcacag 5359 Query: 62 agatggctgctgccttctcctccaccgtcggggctccgg 100 ||||||||||||||||||||||||||||||||||||||| Sbjct: 5360 agatggctgctgccttctcctccaccgtcggggctccgg 5398
>gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mRNA, 3' end Length = 1394 Score = 519 bits (262), Expect = e-144 Identities = 271/274 (98%) Strand = Plus / Plus Query: 178 tccaaggccaacaggttcacagtcatggcagcggagaacatcgacgagaagaggaacacc 237 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 tccaaggccaacaggttcacagtcatggcagcggagaacatcgacgagaagaggaacacc 60 Query: 238 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 297 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 61 gacaagtggaagggtcttgctaccgatatctccgacgaccagcaggacatcaccagaggg 120 Query: 298 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 357 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 180 Query: 358 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 417 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 240 Query: 418 ggaggcttctacatcgctcctgctttcatggaca 451 |||||||||||||||||||||||||||||||||| Sbjct: 241 ggaggcttctacatcgctcctgctttcatggaca 274
>gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha form precursor (RCA1) mRNA, complete cds; nuclear gene for chloroplast product Length = 1616 Score = 297 bits (150), Expect = 2e-77 Identities = 198/214 (92%) Strand = Plus / Plus Query: 238 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 297 |||||||||||||| || || ||||||||||||||||||||||||||||||||||| || Sbjct: 257 gacaagtggaagggcctcgcctacgatatctccgacgaccagcaggacatcaccaggggt 316 Query: 298 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 357 ||||| ||||| ||||| || ||||||||||||| |||||| |||||||||||||||||| Sbjct: 317 aagggtatcgtcgactccctgttccaggcgcccatgggcgatggcacccacgaggccgtc 376 Query: 358 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 417 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 377 ctcagctcctacgagtacgtcagccagggcctcaagaagtacgacttcgacaacaccatg 436 Query: 418 ggaggcttctacatcgctcctgctttcatggaca 451 ||||||||||||||||| || ||||||||||||| Sbjct: 437 ggaggcttctacatcgccccggctttcatggaca 470 Score = 228 bits (115), Expect = 1e-56 Identities = 139/147 (94%) Strand = Plus / Plus Query: 60 agagatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaactt 119 ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| ||| Sbjct: 76 agagatggctgctgccttctcctccaccgtcggagctccggcttccacgccgaccagctt 135 Query: 120 cctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctc 179 |||||| || |||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 136 cctcggcaacaagctcaagaagcaggtgacctcggcagtgaactaccatggcaagagctt 195 Query: 180 caaggccaacaggttcacagtcatggc 206 |||||||||||||||||| |||||||| Sbjct: 196 caaggccaacaggttcaccgtcatggc 222
>gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form precursor (RCA2) mRNA, complete cds; nuclear gene for chloroplast product Length = 1646 Score = 278 bits (140), Expect = 1e-71 Identities = 195/214 (91%) Strand = Plus / Plus Query: 238 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 297 |||||||||||||| || || ||||||||||||||||||||||||||||||||||| || Sbjct: 247 gacaagtggaagggcctcgcctacgatatctccgacgaccagcaggacatcaccaggggt 306 Query: 298 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 357 ||||| ||||| ||||| | ||||||||||||| |||||| || ||||||||||||||| Sbjct: 307 aagggtatcgtcgactccttgttccaggcgcccatgggcgatggnacccacgaggccgtc 366 Query: 358 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 417 |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 367 ctcagctcntacgagtacgtcagccagggcctcaagaagtacgacttcgacaacaccatg 426 Query: 418 ggaggcttctacatcgctcctgctttcatggaca 451 ||||||||||||||||| || ||||||||||||| Sbjct: 427 ggaggcttctacatcgccccggctttcatggaca 460 Score = 222 bits (112), Expect = 8e-55 Identities = 138/147 (93%) Strand = Plus / Plus Query: 60 agagatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaactt 119 ||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||| ||| Sbjct: 66 agagatggctgctgccttctcctccaccgtcggagctccggcttccacgccnaccagctt 125 Query: 120 cctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctc 179 |||||| || |||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 126 cctcggcaacaagctcaagaagcaggtgacctcggcagtgaactaccatggcaagagctt 185 Query: 180 caaggccaacaggttcacagtcatggc 206 |||||||||||||||||| |||||||| Sbjct: 186 caaggccaacaggttcaccgtcatggc 212
>dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ribulose-bisphosphate carboxylase activase large isoform precursor protein, complete cds, clone: 13YPR038 Length = 1558 Score = 258 bits (130), Expect = 1e-65 Identities = 193/214 (90%) Strand = Plus / Plus Query: 238 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 297 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 204 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 263 Query: 298 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 357 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 264 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 323 Query: 358 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 417 |||||||||||||||||| |||||||||| || | | |||||||||||||||||||||| Sbjct: 324 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 383 Query: 418 ggaggcttctacatcgctcctgctttcatggaca 451 ||||||||||||||||| |||||||||||||||| Sbjct: 384 ggaggcttctacatcgcccctgctttcatggaca 417 Score = 172 bits (87), Expect = 6e-40 Identities = 123/135 (91%) Strand = Plus / Plus Query: 62 agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 121 |||||||||||||||||||||||||||| || |||||||| || || ||||||||||||| Sbjct: 25 agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 84 Query: 122 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 181 | ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct: 85 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 144 Query: 182 aggccaacaggttca 196 | ||||||||||| Sbjct: 145 acatcaacaggttca 159
>dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F01, full insert sequence Length = 1721 Score = 258 bits (130), Expect = 1e-65 Identities = 193/214 (90%) Strand = Plus / Plus Query: 238 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 297 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 252 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 311 Query: 298 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 357 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 312 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 371 Query: 358 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 417 |||||||||||||||||| |||||||||| || | | |||||||||||||||||||||| Sbjct: 372 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 431 Query: 418 ggaggcttctacatcgctcctgctttcatggaca 451 ||||||||||||||||| |||||||||||||||| Sbjct: 432 ggaggcttctacatcgcccctgctttcatggaca 465 Score = 172 bits (87), Expect = 6e-40 Identities = 123/135 (91%) Strand = Plus / Plus Query: 62 agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 121 |||||||||||||||||||||||||||| || |||||||| || || ||||||||||||| Sbjct: 73 agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 132 Query: 122 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 181 | ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct: 133 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 192 Query: 182 aggccaacaggttca 196 | ||||||||||| Sbjct: 193 acatcaacaggttca 207
>dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C24, full insert sequence Length = 1680 Score = 258 bits (130), Expect = 1e-65 Identities = 193/214 (90%) Strand = Plus / Plus Query: 238 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 297 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 241 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 300 Query: 298 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 357 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 301 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 360 Query: 358 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 417 |||||||||||||||||| |||||||||| || | | |||||||||||||||||||||| Sbjct: 361 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 420 Query: 418 ggaggcttctacatcgctcctgctttcatggaca 451 ||||||||||||||||| |||||||||||||||| Sbjct: 421 ggaggcttctacatcgcccctgctttcatggaca 454 Score = 172 bits (87), Expect = 6e-40 Identities = 123/135 (91%) Strand = Plus / Plus Query: 62 agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 121 |||||||||||||||||||||||||||| || |||||||| || || ||||||||||||| Sbjct: 62 agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 121 Query: 122 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 181 | ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct: 122 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 181 Query: 182 aggccaacaggttca 196 | ||||||||||| Sbjct: 182 acatcaacaggttca 196
>dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E04, full insert sequence Length = 1691 Score = 258 bits (130), Expect = 1e-65 Identities = 193/214 (90%) Strand = Plus / Plus Query: 238 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 297 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 240 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 299 Query: 298 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 357 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 300 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 359 Query: 358 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 417 |||||||||||||||||| |||||||||| || | | |||||||||||||||||||||| Sbjct: 360 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 419 Query: 418 ggaggcttctacatcgctcctgctttcatggaca 451 ||||||||||||||||| |||||||||||||||| Sbjct: 420 ggaggcttctacatcgcccctgctttcatggaca 453 Score = 172 bits (87), Expect = 6e-40 Identities = 123/135 (91%) Strand = Plus / Plus Query: 62 agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 121 |||||||||||||||||||||||||||| || |||||||| || || ||||||||||||| Sbjct: 61 agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 120 Query: 122 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 181 | ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct: 121 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 180 Query: 182 aggccaacaggttca 196 | ||||||||||| Sbjct: 181 acatcaacaggttca 195
>dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D05, full insert sequence Length = 1470 Score = 258 bits (130), Expect = 1e-65 Identities = 193/214 (90%) Strand = Plus / Plus Query: 238 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 297 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 24 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 83 Query: 298 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 357 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 84 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 143 Query: 358 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 417 |||||||||||||||||| |||||||||| || | | |||||||||||||||||||||| Sbjct: 144 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 203 Query: 418 ggaggcttctacatcgctcctgctttcatggaca 451 ||||||||||||||||| |||||||||||||||| Sbjct: 204 ggaggcttctacatcgcccctgctttcatggaca 237
>dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase small isoform precursor, complete cds Length = 1706 Score = 258 bits (130), Expect = 1e-65 Identities = 193/214 (90%) Strand = Plus / Plus Query: 238 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 297 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 245 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 304 Query: 298 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 357 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 305 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 364 Query: 358 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 417 |||||||||||||||||| |||||||||| || | | |||||||||||||||||||||| Sbjct: 365 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 424 Query: 418 ggaggcttctacatcgctcctgctttcatggaca 451 ||||||||||||||||| |||||||||||||||| Sbjct: 425 ggaggcttctacatcgcccctgctttcatggaca 458 Score = 165 bits (83), Expect = 2e-37 Identities = 122/135 (90%) Strand = Plus / Plus Query: 62 agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 121 |||||||||||||||||||||||||||| || |||||||| || || ||||||||||||| Sbjct: 66 agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 125 Query: 122 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 181 | ||||||||||| || ||||||||||| ||||| ||||||||||||||||||||||||| Sbjct: 126 tggggaagaagctgaaaaagcaggtgacatcggcggtgaactaccatggcaagagctcca 185 Query: 182 aggccaacaggttca 196 | ||||||||||| Sbjct: 186 acatcaacaggttca 200
>dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform precursor, complete cds Length = 1623 Score = 258 bits (130), Expect = 1e-65 Identities = 193/214 (90%) Strand = Plus / Plus Query: 238 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 297 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 239 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 298 Query: 298 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 357 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 299 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 358 Query: 358 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 417 |||||||||||||||||| |||||||||| || | | |||||||||||||||||||||| Sbjct: 359 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 418 Query: 418 ggaggcttctacatcgctcctgctttcatggaca 451 ||||||||||||||||| |||||||||||||||| Sbjct: 419 ggaggcttctacatcgcccctgctttcatggaca 452 Score = 172 bits (87), Expect = 6e-40 Identities = 123/135 (91%) Strand = Plus / Plus Query: 62 agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 121 |||||||||||||||||||||||||||| || |||||||| || || ||||||||||||| Sbjct: 60 agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 119 Query: 122 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 181 | ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct: 120 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 179 Query: 182 aggccaacaggttca 196 | ||||||||||| Sbjct: 180 acatcaacaggttca 194
>gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carboxylase/oxygenase activase (rca) mRNA, complete cds Length = 1675 Score = 250 bits (126), Expect = 3e-63 Identities = 192/214 (89%) Strand = Plus / Plus Query: 238 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 297 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 212 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 271 Query: 298 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 357 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 272 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 331 Query: 358 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 417 |||||||||||||||||| |||||||||| || | | |||||||||||||||||||||| Sbjct: 332 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 391 Query: 418 ggaggcttctacatcgctcctgctttcatggaca 451 ||||||||||||||||| ||| |||||||||||| Sbjct: 392 ggaggcttctacatcgccccttctttcatggaca 425 Score = 172 bits (87), Expect = 6e-40 Identities = 123/135 (91%) Strand = Plus / Plus Query: 62 agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 121 |||||||||||||||||||||||||||| || |||||||| || || ||||||||||||| Sbjct: 33 agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 92 Query: 122 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 181 | ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct: 93 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 152 Query: 182 aggccaacaggttca 196 | ||||||||||| Sbjct: 153 acatcaacaggttca 167
>gb|AF251264.1|AF251264 Triticum aestivum ribulose bisphosphate carboxylase activase B (RcaB) mRNA, complete cds; nuclear gene for chloroplast product Length = 1525 Score = 232 bits (117), Expect = 8e-58 Identities = 186/209 (88%) Strand = Plus / Plus Query: 243 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 302 |||||||||||| || ||||| |||||||| ||||||||||||||||| || ||||| || Sbjct: 217 gtggaagggtctcgcttacgacatctccgatgaccagcaggacatcacgagggggaaagg 276 Query: 303 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcag 362 |||||||||||| || |||||||| |||| |||||||||||||||||||||| |||| || Sbjct: 277 catcgtggactccctgttccaggcccccatgggcgacggcacccacgaggccatcctgag 336 Query: 363 ctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggagg 422 ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| || Sbjct: 337 ctcctacgagtacatcagccagggcctgcgcaagtacgacttcgacaacaccatggacgg 396 Query: 423 cttctacatcgctcctgctttcatggaca 451 | |||||||| || || |||||||||| Sbjct: 397 gctgtacatcgccccggcgttcatggaca 425 Score = 77.8 bits (39), Expect = 3e-11 Identities = 72/83 (86%) Strand = Plus / Plus Query: 63 gatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcct 122 ||||||| |||| ||||| |||||||| || |||||||| || || ||||||| |||||| Sbjct: 25 gatggcttctgctttctcgtccaccgttggagctccggcgtcgaccccgaccaccttcct 84 Query: 123 cgggaagaagctcaagaagcagg 145 |||||||||| | |||||||||| Sbjct: 85 cgggaagaaggtgaagaagcagg 107
>gb|M55448.1|BLYRCAB Hordeum vulgare rubisco activase (RcaB) mRNA, complete cds Length = 1656 Score = 232 bits (117), Expect = 8e-58 Identities = 186/209 (88%) Strand = Plus / Plus Query: 243 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 302 |||||||||||| || ||||| ||||| |||||||||||||||||||| | ||||| || Sbjct: 370 gtggaagggtctggcctacgacatctcggacgaccagcaggacatcactcgggggaaagg 429 Query: 303 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcag 362 |||||||||||| || |||||||| |||| |||||||||||||||||||||| |||| || Sbjct: 430 catcgtggactccctgttccaggcccccatgggcgacggcacccacgaggccatcctaag 489 Query: 363 ctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggagg 422 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || Sbjct: 490 ctcctacgagtacatcagccagggcctgcggaagtacgacttcgacaacaccatggacgg 549 Query: 423 cttctacatcgctcctgctttcatggaca 451 | |||||||| || || |||||||||| Sbjct: 550 gctgtacatcgcgccggcattcatggaca 578
>gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0003C04 map S10003, complete sequence Length = 119238 Score = 176 bits (89), Expect = 4e-41 Identities = 134/149 (89%) Strand = Plus / Minus Query: 238 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 297 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 109706 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 109647 Query: 298 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 357 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 109646 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 109587 Query: 358 ctcagctcctacgagtacgtcagccaggg 386 |||||||||||||||||| |||||||||| Sbjct: 109586 ctcagctcctacgagtacctcagccaggg 109558 Score = 125 bits (63), Expect = 1e-25 Identities = 99/111 (89%) Strand = Plus / Minus Query: 243 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 302 ||||||||| || |||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct: 113205 gtggaagggactcgcgtacgacatctccgacgaccagcaggacatcaccagggggaaggg 113146 Query: 303 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggc 353 | |||| ||||| || |||||||| |||| ||| || |||||||||||||| Sbjct: 113145 cctcgtcgactccctgttccaggctcccatgggtgatggcacccacgaggc 113095 Score = 119 bits (60), Expect = 8e-24 Identities = 81/88 (92%) Strand = Plus / Minus Query: 109 ccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccat 168 |||||||||||||| ||||||||||| |||||||||||||| ||||| |||||||||||| Sbjct: 109838 ccgaccaacttcctggggaagaagctgaagaagcaggtgacatcggcggtgaactaccat 109779 Query: 169 ggcaagagctccaaggccaacaggttca 196 |||||||||||||| ||||||||||| Sbjct: 109778 ggcaagagctccaacatcaacaggttca 109751 Score = 103 bits (52), Expect = 5e-19 Identities = 55/56 (98%) Strand = Plus / Minus Query: 396 gtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggaca 451 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 109435 gtacgacttcgacaacaccatgggaggcttctacatcgcccctgctttcatggaca 109380 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Minus Query: 62 agatggctgctgccttctcctccaccgtcggggctccgg 100 |||||||||||||||||||||||||||| || ||||||| Sbjct: 109984 agatggctgctgccttctcctccaccgttggagctccgg 109946
>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0026K20 map S10559, complete sequence Length = 115996 Score = 176 bits (89), Expect = 4e-41 Identities = 134/149 (89%) Strand = Plus / Minus Query: 238 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 297 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 31583 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 31524 Query: 298 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 357 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 31523 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 31464 Query: 358 ctcagctcctacgagtacgtcagccaggg 386 |||||||||||||||||| |||||||||| Sbjct: 31463 ctcagctcctacgagtacctcagccaggg 31435 Score = 125 bits (63), Expect = 1e-25 Identities = 99/111 (89%) Strand = Plus / Minus Query: 243 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 302 ||||||||| || |||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct: 35082 gtggaagggactcgcgtacgacatctccgacgaccagcaggacatcaccagggggaaggg 35023 Query: 303 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggc 353 | |||| ||||| || |||||||| |||| ||| || |||||||||||||| Sbjct: 35022 cctcgtcgactccctgttccaggctcccatgggtgatggcacccacgaggc 34972 Score = 119 bits (60), Expect = 8e-24 Identities = 81/88 (92%) Strand = Plus / Minus Query: 109 ccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccat 168 |||||||||||||| ||||||||||| |||||||||||||| ||||| |||||||||||| Sbjct: 31715 ccgaccaacttcctggggaagaagctgaagaagcaggtgacatcggcggtgaactaccat 31656 Query: 169 ggcaagagctccaaggccaacaggttca 196 |||||||||||||| ||||||||||| Sbjct: 31655 ggcaagagctccaacatcaacaggttca 31628 Score = 103 bits (52), Expect = 5e-19 Identities = 55/56 (98%) Strand = Plus / Minus Query: 396 gtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggaca 451 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 31312 gtacgacttcgacaacaccatgggaggcttctacatcgcccctgctttcatggaca 31257 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Minus Query: 62 agatggctgctgccttctcctccaccgtcggggctccgg 100 |||||||||||||||||||||||||||| || ||||||| Sbjct: 31861 agatggctgctgccttctcctccaccgttggagctccgg 31823
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 176 bits (89), Expect = 4e-41 Identities = 134/149 (89%) Strand = Plus / Minus Query: 238 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 297 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 28304845 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 28304786 Query: 298 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 357 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 28304785 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 28304726 Query: 358 ctcagctcctacgagtacgtcagccaggg 386 |||||||||||||||||| |||||||||| Sbjct: 28304725 ctcagctcctacgagtacctcagccaggg 28304697 Score = 125 bits (63), Expect = 1e-25 Identities = 99/111 (89%) Strand = Plus / Minus Query: 243 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 302 ||||||||| || |||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct: 28308344 gtggaagggactcgcgtacgacatctccgacgaccagcaggacatcaccagggggaaggg 28308285 Query: 303 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggc 353 | |||| ||||| || |||||||| |||| ||| || |||||||||||||| Sbjct: 28308284 cctcgtcgactccctgttccaggctcccatgggtgatggcacccacgaggc 28308234 Score = 119 bits (60), Expect = 8e-24 Identities = 81/88 (92%) Strand = Plus / Minus Query: 109 ccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccat 168 |||||||||||||| ||||||||||| |||||||||||||| ||||| |||||||||||| Sbjct: 28304977 ccgaccaacttcctggggaagaagctgaagaagcaggtgacatcggcggtgaactaccat 28304918 Query: 169 ggcaagagctccaaggccaacaggttca 196 |||||||||||||| ||||||||||| Sbjct: 28304917 ggcaagagctccaacatcaacaggttca 28304890 Score = 103 bits (52), Expect = 5e-19 Identities = 55/56 (98%) Strand = Plus / Minus Query: 396 gtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggaca 451 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 28304574 gtacgacttcgacaacaccatgggaggcttctacatcgcccctgctttcatggaca 28304519 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Minus Query: 62 agatggctgctgccttctcctccaccgtcggggctccgg 100 |||||||||||||||||||||||||||| || ||||||| Sbjct: 28305123 agatggctgctgccttctcctccaccgttggagctccgg 28305085
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 176 bits (89), Expect = 4e-41 Identities = 134/149 (89%) Strand = Plus / Minus Query: 238 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 297 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 28287294 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 28287235 Query: 298 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 357 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 28287234 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 28287175 Query: 358 ctcagctcctacgagtacgtcagccaggg 386 |||||||||||||||||| |||||||||| Sbjct: 28287174 ctcagctcctacgagtacctcagccaggg 28287146 Score = 125 bits (63), Expect = 1e-25 Identities = 99/111 (89%) Strand = Plus / Minus Query: 243 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 302 ||||||||| || |||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct: 28290793 gtggaagggactcgcgtacgacatctccgacgaccagcaggacatcaccagggggaaggg 28290734 Query: 303 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggc 353 | |||| ||||| || |||||||| |||| ||| || |||||||||||||| Sbjct: 28290733 cctcgtcgactccctgttccaggctcccatgggtgatggcacccacgaggc 28290683 Score = 119 bits (60), Expect = 8e-24 Identities = 81/88 (92%) Strand = Plus / Minus Query: 109 ccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccat 168 |||||||||||||| ||||||||||| |||||||||||||| ||||| |||||||||||| Sbjct: 28287426 ccgaccaacttcctggggaagaagctgaagaagcaggtgacatcggcggtgaactaccat 28287367 Query: 169 ggcaagagctccaaggccaacaggttca 196 |||||||||||||| ||||||||||| Sbjct: 28287366 ggcaagagctccaacatcaacaggttca 28287339 Score = 103 bits (52), Expect = 5e-19 Identities = 55/56 (98%) Strand = Plus / Minus Query: 396 gtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggaca 451 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 28287023 gtacgacttcgacaacaccatgggaggcttctacatcgcccctgctttcatggaca 28286968 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Minus Query: 62 agatggctgctgccttctcctccaccgtcggggctccgg 100 |||||||||||||||||||||||||||| || ||||||| Sbjct: 28287572 agatggctgctgccttctcctccaccgttggagctccgg 28287534
>dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F04, full insert sequence Length = 1682 Score = 172 bits (87), Expect = 6e-40 Identities = 123/135 (91%) Strand = Plus / Plus Query: 62 agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 121 |||||||||||||||||||||||||||| || |||||||| || || ||||||||||||| Sbjct: 61 agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 120 Query: 122 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 181 | ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct: 121 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 180 Query: 182 aggccaacaggttca 196 | ||||||||||| Sbjct: 181 acatcaacaggttca 195 Score = 123 bits (62), Expect = 5e-25 Identities = 83/90 (92%) Strand = Plus / Plus Query: 362 gctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggag 421 |||||||||||||| |||||||||| || | | |||||||||||||||||||||||||| Sbjct: 327 gctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatgggag 386 Query: 422 gcttctacatcgctcctgctttcatggaca 451 ||||||||||||| |||||||||||||||| Sbjct: 387 gcttctacatcgcccctgctttcatggaca 416 Score = 89.7 bits (45), Expect = 7e-15 Identities = 78/89 (87%) Strand = Plus / Plus Query: 238 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 297 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 240 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 299 Query: 298 aagggcatcgtggactcgctcttccaggc 326 ||||| |||| ||||| || |||||||| Sbjct: 300 aagggtttcgtcgactcccttttccaggc 328
>gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/oxygenase activase precursor (rca1) mRNA, complete cds Length = 1424 Score = 133 bits (67), Expect = 5e-28 Identities = 130/151 (86%) Strand = Plus / Plus Query: 238 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 297 |||| ||||||||| || || ||||| ||||| ||||||||||||||||||||||| || Sbjct: 213 gacaggtggaagggcctggcctacgacatctcggacgaccagcaggacatcaccaggggc 272 Query: 298 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 357 |||||| |||| ||| |||||||||||||| | ||| ||||||||||||| ||||| Sbjct: 273 aagggcctcgtcgacaacctcttccaggcgcctatgggggacggcacccacgtcgccgtg 332 Query: 358 ctcagctcctacgagtacgtcagccagggcc 388 |||||||||||||| ||| |||||||||||| Sbjct: 333 ctcagctcctacgactacatcagccagggcc 363 Score = 91.7 bits (46), Expect = 2e-15 Identities = 107/127 (84%), Gaps = 9/127 (7%) Strand = Plus / Plus Query: 64 atggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaa------c 117 ||||| || |||||||||||||||||||| |||||||| || || ||||||| | Sbjct: 21 atggcggccgccttctcctccaccgtcggagctccggcctccaccccgaccaggagcagc 80 Query: 118 ttcctcgggaagaagctcaagaagc---aggtgacctcggccgtgaactaccatggcaag 174 |||||||||||||||||||| |||| ||||| || ||||||||| ||||||||||||| Sbjct: 81 ttcctcgggaagaagctcaacaagccgcaggtgtccgcggccgtgacctaccatggcaag 140 Query: 175 agctcca 181 ||||||| Sbjct: 141 agctcca 147
>gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase (rca4) mRNA, partial cds Length = 1674 Score = 111 bits (56), Expect = 2e-21 Identities = 95/108 (87%) Strand = Plus / Plus Query: 274 gaccagcaggacatcaccagagggaagggcatcgtggactcgctcttccaggcgcccacg 333 |||||||||||||||||||| ||||||||||| || ||||| || |||||||| |||| | Sbjct: 235 gaccagcaggacatcaccagggggaagggcatggtcgactccctgttccaggctcccatg 294 Query: 334 ggcgacggcacccacgaggccgtcctcagctcctacgagtacgtcagc 381 |||||||| |||||| | ||||||| ||||||||||||||| ||||| Sbjct: 295 ggcgacggaacccacaaccccgtcctgagctcctacgagtacatcagc 342
>gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase (rca3) mRNA, partial cds Length = 1494 Score = 111 bits (56), Expect = 2e-21 Identities = 95/108 (87%) Strand = Plus / Plus Query: 274 gaccagcaggacatcaccagagggaagggcatcgtggactcgctcttccaggcgcccacg 333 |||||||||||||||||||| ||||||||||| || ||||| || |||||||| |||| | Sbjct: 98 gaccagcaggacatcaccagggggaagggcatggtcgactccctgttccaggctcccatg 157 Query: 334 ggcgacggcacccacgaggccgtcctcagctcctacgagtacgtcagc 381 |||||||| |||||| | ||||||| ||||||||||||||| ||||| Sbjct: 158 ggcgacggaacccacaaccccgtcctgagctcctacgagtacatcagc 205
>gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase (rca1) mRNA, partial cds Length = 1597 Score = 111 bits (56), Expect = 2e-21 Identities = 95/108 (87%) Strand = Plus / Plus Query: 274 gaccagcaggacatcaccagagggaagggcatcgtggactcgctcttccaggcgcccacg 333 |||||||||||||||||||| ||||||||||| || ||||| || |||||||| |||| | Sbjct: 128 gaccagcaggacatcaccagggggaagggcatggtcgactccctgttccaggctcccatg 187 Query: 334 ggcgacggcacccacgaggccgtcctcagctcctacgagtacgtcagc 381 |||||||| |||||| | ||||||| ||||||||||||||| ||||| Sbjct: 188 ggcgacggaacccacaaccccgtcctgagctcctacgagtacatcagc 235
>gb|AY110044.1| Zea mays CL1146_1 mRNA sequence Length = 1750 Score = 111 bits (56), Expect = 2e-21 Identities = 126/151 (83%) Strand = Plus / Plus Query: 238 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 297 |||| ||||||||| || || ||||| ||||| ||||||||||||||||||||||| || Sbjct: 213 gacaggtggaagggcctggcctacgacatctcggacgaccagcaggacatcaccaggggc 272 Query: 298 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 357 |||||| |||| ||| |||||||||||||| | |||||||||||| ||||| Sbjct: 273 aagggcctcgtcgacaacctcttccaggcgcctatnnnnnacggcacccacgtcgccgtg 332 Query: 358 ctcagctcctacgagtacgtcagccagggcc 388 |||||||||||||| ||| |||||||||||| Sbjct: 333 ctcagctcctacgactacatcagccagggcc 363 Score = 91.7 bits (46), Expect = 2e-15 Identities = 107/127 (84%), Gaps = 9/127 (7%) Strand = Plus / Plus Query: 64 atggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaa------c 117 ||||| || |||||||||||||||||||| |||||||| || || ||||||| | Sbjct: 21 atggcggccgccttctcctccaccgtcggagctccggcctccaccccgaccaggagcagc 80 Query: 118 ttcctcgggaagaagctcaagaagc---aggtgacctcggccgtgaactaccatggcaag 174 |||||||||||||||||||| |||| ||||| || ||||||||| ||||||||||||| Sbjct: 81 ttcctcgggaagaagctcaacaagccgcaggtgtccgcggccgtgacctaccatggcaag 140 Query: 175 agctcca 181 ||||||| Sbjct: 141 agctcca 147
>gb|AF329934.1|AF329934 Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase activase 1 mRNA, complete cds Length = 1559 Score = 79.8 bits (40), Expect = 7e-12 Identities = 166/208 (79%) Strand = Plus / Plus Query: 244 tggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaagggc 303 |||||||||||||| || ||||||||||| ||||| || ||||| ||||||||||| || Sbjct: 280 tggaagggtcttgcttatgatatctccgatgaccaacaagacattaccagagggaaaggt 339 Query: 304 atcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcagc 363 || || ||||| | ||||| || |||| | ||| || || ||| | || ||| | ||| Sbjct: 340 atggtcgactcattgttccaagctcccatgaacgatggtactcactatgctgtcatgagc 399 Query: 364 tcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggaggc 423 ||||| |||||| | ||||| ||||| || | |||||||| ||||||| ||||| || Sbjct: 400 tcctatgagtacattagccaaggccttcgcacatacgacttggacaacaacatggatgga 459 Query: 424 ttctacatcgctcctgctttcatggaca 451 |||||||| || || ||||||||||||| Sbjct: 460 ttctacattgccccagctttcatggaca 487
>gb|U35111.1|NTU35111 Nicotiana tabacum rubisco activase precursor (Rca) mRNA, complete cds Length = 1674 Score = 63.9 bits (32), Expect = 4e-07 Identities = 74/88 (84%) Strand = Plus / Plus Query: 364 tcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggaggc 423 |||||||| ||||||||||| || || || ||||| |||| ||||||| ||| || Sbjct: 396 tcctacgaatacgtcagccaaggtcttcgccagtacaacttggacaacaagttggacgga 455 Query: 424 ttctacatcgctcctgctttcatggaca 451 |||||||||||||||||||||||||||| Sbjct: 456 ttctacatcgctcctgctttcatggaca 483
>ref|NM_179989.1| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2G39730 (RCA) transcript variant AT2G39730.2 mRNA, complete cds Length = 1815 Score = 58.0 bits (29), Expect = 3e-05 Identities = 80/97 (82%) Strand = Plus / Plus Query: 355 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 414 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 496 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 555 Query: 415 atgggaggcttctacatcgctcctgctttcatggaca 451 |||| || || ||||| ||||||||||||||||||| Sbjct: 556 atggatgggttttacattgctcctgctttcatggaca 592
>ref|NM_179990.1| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2G39730 (RCA) transcript variant AT2G39730.3 mRNA, complete cds Length = 1928 Score = 58.0 bits (29), Expect = 3e-05 Identities = 80/97 (82%) Strand = Plus / Plus Query: 355 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 414 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 496 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 555 Query: 415 atgggaggcttctacatcgctcctgctttcatggaca 451 |||| || || ||||| ||||||||||||||||||| Sbjct: 556 atggatgggttttacattgctcctgctttcatggaca 592
>ref|NM_129531.2| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2G39730 (RCA) transcript variant AT2G39730.1 mRNA, complete cds Length = 1833 Score = 58.0 bits (29), Expect = 3e-05 Identities = 80/97 (82%) Strand = Plus / Plus Query: 355 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 414 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 525 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 584 Query: 415 atgggaggcttctacatcgctcctgctttcatggaca 451 |||| || || ||||| ||||||||||||||||||| Sbjct: 585 atggatgggttttacattgctcctgctttcatggaca 621
>gb|BT000710.1| Arabidopsis thaliana clone RAFL09-90-K08 (R19890) unknown protein (At2g39730) mRNA, complete cds Length = 1697 Score = 58.0 bits (29), Expect = 3e-05 Identities = 80/97 (82%) Strand = Plus / Plus Query: 355 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 414 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 407 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 466 Query: 415 atgggaggcttctacatcgctcctgctttcatggaca 451 |||| || || ||||| ||||||||||||||||||| Sbjct: 467 atggatgggttttacattgctcctgctttcatggaca 503
>gb|BT000613.1| Arabidopsis thaliana Rubsico activase (At2g39730/T5I7.3) mRNA, complete cds Length = 1425 Score = 58.0 bits (29), Expect = 3e-05 Identities = 80/97 (82%) Strand = Plus / Plus Query: 355 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 414 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 322 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 381 Query: 415 atgggaggcttctacatcgctcctgctttcatggaca 451 |||| || || ||||| ||||||||||||||||||| Sbjct: 382 atggatgggttttacattgctcctgctttcatggaca 418
>gb|AY056108.1| Arabidopsis thaliana At2g39730/T5I7.3_ mRNA, complete cds Length = 1674 Score = 58.0 bits (29), Expect = 3e-05 Identities = 80/97 (82%) Strand = Plus / Plus Query: 355 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 414 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 410 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 469 Query: 415 atgggaggcttctacatcgctcctgctttcatggaca 451 |||| || || ||||| ||||||||||||||||||| Sbjct: 470 atggatgggttttacattgctcctgctttcatggaca 506
>gb|AY052703.1| Arabidopsis thaliana At2g39730/T5I7.3 mRNA, complete cds Length = 1693 Score = 58.0 bits (29), Expect = 3e-05 Identities = 80/97 (82%) Strand = Plus / Plus Query: 355 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 414 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 399 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 458 Query: 415 atgggaggcttctacatcgctcctgctttcatggaca 451 |||| || || ||||| ||||||||||||||||||| Sbjct: 459 atggatgggttttacattgctcctgctttcatggaca 495
>gb|AY052290.1| Arabidopsis thaliana At2g39730/T5I7.3 mRNA, complete cds Length = 1655 Score = 58.0 bits (29), Expect = 3e-05 Identities = 80/97 (82%) Strand = Plus / Plus Query: 355 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 414 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 407 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 466 Query: 415 atgggaggcttctacatcgctcctgctttcatggaca 451 |||| || || ||||| ||||||||||||||||||| Sbjct: 467 atggatgggttttacattgctcctgctttcatggaca 503
>gb|AF325049.2|AF325049 Arabidopsis thaliana At2g39730 (At2g39730/T5I7.3) mRNA, complete cds Length = 1674 Score = 58.0 bits (29), Expect = 3e-05 Identities = 80/97 (82%) Strand = Plus / Plus Query: 355 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 414 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 410 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 469 Query: 415 atgggaggcttctacatcgctcctgctttcatggaca 451 |||| || || ||||| ||||||||||||||||||| Sbjct: 470 atggatgggttttacattgctcctgctttcatggaca 506
>gb|AY088487.1| Arabidopsis thaliana clone 7114 mRNA, complete sequence Length = 1787 Score = 58.0 bits (29), Expect = 3e-05 Identities = 80/97 (82%) Strand = Plus / Plus Query: 355 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 414 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 525 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 584 Query: 415 atgggaggcttctacatcgctcctgctttcatggaca 451 |||| || || ||||| ||||||||||||||||||| Sbjct: 585 atggatgggttttacattgctcctgctttcatggaca 621
>emb|X14212.1|ATRCA Arabidopsis thaliana mRNA for rubisco activase Length = 1652 Score = 58.0 bits (29), Expect = 3e-05 Identities = 80/97 (82%) Strand = Plus / Plus Query: 355 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 414 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 391 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 450 Query: 415 atgggaggcttctacatcgctcctgctttcatggaca 451 |||| || || ||||| ||||||||||||||||||| Sbjct: 451 atggatgggttttacattgctcctgctttcatggaca 487
>gb|BT012795.1| Lycopersicon esculentum clone 113794R, mRNA sequence Length = 1519 Score = 56.0 bits (28), Expect = 1e-04 Identities = 28/28 (100%) Strand = Plus / Plus Query: 424 ttctacatcgctcctgctttcatggaca 451 |||||||||||||||||||||||||||| Sbjct: 473 ttctacatcgctcctgctttcatggaca 500
>emb|Z21794.1|MDRBSCACA M.domestica ribulose-1,5-bisphosphate carboxylase/oxygenase activase mRNA Length = 1853 Score = 56.0 bits (28), Expect = 1e-04 Identities = 52/60 (86%) Strand = Plus / Plus Query: 267 ctccgacgaccagcaggacatcaccagagggaagggcatcgtggactcgctcttccaggc 326 |||||||||||| || |||||||| ||||| ||||| | |||||||| ||||||||||| Sbjct: 319 ctccgacgaccaacaagacatcacaagaggaaagggtaaggtggactccctcttccaggc 378
>gb|AF126870.2|AF126870 Vigna radiata rubisco activase (Rca) mRNA, complete cds; nuclear gene for chloroplast product Length = 1671 Score = 54.0 bits (27), Expect = 4e-04 Identities = 51/59 (86%) Strand = Plus / Plus Query: 244 tggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 302 ||||||||||| || ||||||||||| || ||||| || |||||||| || |||||||| Sbjct: 295 tggaagggtctggcctacgatatctctgatgaccaacaagacatcacaagggggaaggg 353
>gb|AF329935.1|AF329935 Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase activase 2 mRNA, partial cds Length = 1462 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Plus Query: 406 gacaacaccatgggaggcttctacatcgctcctgctttcatggaca 451 ||||||| ||||| || ||||||||||||||||| |||||||||| Sbjct: 257 gacaacaacatggatggtttctacatcgctcctgcattcatggaca 302
>emb|Z14980.1|NTRCAJQ4 N.tabacum Rca gene for ribulose bisphosphate carboxylase activase (pJQ4) Length = 1655 Score = 48.1 bits (24), Expect = 0.025 Identities = 27/28 (96%) Strand = Plus / Plus Query: 424 ttctacatcgctcctgctttcatggaca 451 ||||||||||||||| |||||||||||| Sbjct: 426 ttctacatcgctccttctttcatggaca 453
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 46.1 bits (23), Expect = 0.098 Identities = 23/23 (100%) Strand = Plus / Minus Query: 269 ccgacgaccagcaggacatcacc 291 ||||||||||||||||||||||| Sbjct: 1452088 ccgacgaccagcaggacatcacc 1452066
>gb|AF037361.1|AF037361 Lycopersicon pennellii rubisco activase mRNA, complete cds Length = 1656 Score = 46.1 bits (23), Expect = 0.098 Identities = 29/31 (93%) Strand = Plus / Plus Query: 421 ggcttctacatcgctcctgctttcatggaca 451 ||||||||||| || |||||||||||||||| Sbjct: 434 ggcttctacattgcccctgctttcatggaca 464
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome Length = 5650368 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 311 actcgctcttccaggcgcccac 332 |||||||||||||||||||||| Sbjct: 2553524 actcgctcttccaggcgcccac 2553503
>gb|AE015925.1| Chlamydophila caviae GPIC, complete genome Length = 1173390 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 126 gaagaagctcaagaagcaggtg 147 |||||||||||||||||||||| Sbjct: 632957 gaagaagctcaagaagcaggtg 632978
>emb|CR701838.2|CNS0G4HM Tetraodon nigroviridis full-length cDNA Length = 929 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 54 cagcacagagatggctgctgc 74 ||||||||||||||||||||| Sbjct: 531 cagcacagagatggctgctgc 511
>emb|CR686472.2|CNS0FSMS Tetraodon nigroviridis full-length cDNA Length = 939 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 54 cagcacagagatggctgctgc 74 ||||||||||||||||||||| Sbjct: 541 cagcacagagatggctgctgc 521
>emb|CR681817.2|CNS0FP1H Tetraodon nigroviridis full-length cDNA Length = 992 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 54 cagcacagagatggctgctgc 74 ||||||||||||||||||||| Sbjct: 595 cagcacagagatggctgctgc 575
>emb|CR680161.1|CNS0FNRH Tetraodon nigroviridis full-length cDNA Length = 1318 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 54 cagcacagagatggctgctgc 74 ||||||||||||||||||||| Sbjct: 932 cagcacagagatggctgctgc 912
>emb|CR675309.2|CNS0FK1F Tetraodon nigroviridis full-length cDNA Length = 1006 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 54 cagcacagagatggctgctgc 74 ||||||||||||||||||||| Sbjct: 609 cagcacagagatggctgctgc 589
>gb|AC003000.3| Arabidopsis thaliana chromosome 2 clone T5I7 map CIC10A06, complete sequence Length = 92624 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 427 tacatcgctcctgctttcatggaca 451 ||||| ||||||||||||||||||| Sbjct: 14910 tacattgctcctgctttcatggaca 14886
>gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase (rca2) mRNA, partial cds Length = 1436 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 353 ccgtcctcagctcctacgagtacgtcagc 381 ||||||| ||||||||||||||| ||||| Sbjct: 13 ccgtcctgagctcctacgagtacatcagc 41
>emb|Y10657.1|CLRCAGENE C.littorale rca gene Length = 2513 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 421 ggcttctacatcgctcctgctttcatgga 449 |||||||||||| ||||||||||| |||| Sbjct: 1128 ggcttctacatctctcctgctttcctgga 1156
>gb|M86720.1|ATHRBCOALP Arabidopisis thaliana ribulose bisphosphate carboxylase/oxygenase activase (rca) gene, complete cds Length = 3974 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 427 tacatcgctcctgctttcatggaca 451 ||||| ||||||||||||||||||| Sbjct: 2373 tacattgctcctgctttcatggaca 2397
>gb|CP000002.2| Bacillus licheniformis ATCC 14580, complete genome Length = 4222334 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 201 catggcagcggagaacatcg 220 |||||||||||||||||||| Sbjct: 1379894 catggcagcggagaacatcg 1379875
>gb|AY820769.1| Homo sapiens HCV NS5A trans-regulated protein 13 mRNA, complete cds Length = 2103 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 65 tggctgctgccttctcctcc 84 |||||||||||||||||||| Sbjct: 715 tggctgctgccttctcctcc 696
>gb|AE010322.1| Methanopyrus kandleri AV19 section 21 of 157 of the complete genome Length = 10732 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 265 atctccgacgaccagcaggacatc 288 |||||| ||||||||||||||||| Sbjct: 8676 atctcccacgaccagcaggacatc 8653
>gb|CP000110.1| Synechococcus sp. CC9605, complete genome Length = 2510659 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 205 gcagcggagaacatcgacga 224 |||||||||||||||||||| Sbjct: 173412 gcagcggagaacatcgacga 173393
>ref|XM_520373.1| PREDICTED: Pan troglodytes LOC464867 (LOC464867), mRNA Length = 1685 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 328 cccacgggcgacggcacccacgag 351 ||||||||||||| |||||||||| Sbjct: 1369 cccacgggcgacgtcacccacgag 1392
>ref|NM_001003053.1| Canis familiaris androgen receptor (dihydrotestosterone receptor; testicular feminization; spinal and bulbar muscular atrophy; Kennedy disease) (AR), mRNA Length = 3577 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 170 gcaagagctccaaggccaac 189 |||||||||||||||||||| Sbjct: 3271 gcaagagctccaaggccaac 3290
>ref|NM_004741.1| Homo sapiens nucleolar and coiled-body phosphoprotein 1 (NOLC1), mRNA Length = 2502 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 65 tggctgctgccttctcctcc 84 |||||||||||||||||||| Sbjct: 766 tggctgctgccttctcctcc 747
>gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, complete sequence Length = 384518 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 ctgccttctcctccaccgtc 90 |||||||||||||||||||| Sbjct: 240861 ctgccttctcctccaccgtc 240842
>gb|AE017333.1| Bacillus licheniformis DSM 13, complete genome Length = 4222645 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 201 catggcagcggagaacatcg 220 |||||||||||||||||||| Sbjct: 1380755 catggcagcggagaacatcg 1380736
>ref|NM_017617.2| Homo sapiens Notch homolog 1, translocation-associated (Drosophila) (NOTCH1), mRNA Length = 9312 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 328 cccacgggcgacggcacccacgag 351 ||||||||||||| |||||||||| Sbjct: 703 cccacgggcgacgtcacccacgag 726
>gb|BC001883.1| Homo sapiens nucleolar and coiled-body phosphoprotein 1, mRNA (cDNA clone MGC:1494 IMAGE:3533568), complete cds Length = 2464 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 65 tggctgctgccttctcctcc 84 |||||||||||||||||||| Sbjct: 722 tggctgctgccttctcctcc 703
>ref|XM_582842.2| PREDICTED: Bos taurus similar to chromodomain helicase DNA binding protein 4 (LOC506402), mRNA Length = 7219 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 ctgctgccttctcctccacc 87 |||||||||||||||||||| Sbjct: 5008 ctgctgccttctcctccacc 4989
>gb|DQ483716.1| Gymnogyps californianus clone 139F microsatellite sequence Length = 457 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 ctgctgccttctcctccacc 87 |||||||||||||||||||| Sbjct: 65 ctgctgccttctcctccacc 46
>gb|DQ483952.1| Gymnogyps californianus clone 118G microsatellite sequence Length = 470 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 ctgctgccttctcctccacc 87 |||||||||||||||||||| Sbjct: 65 ctgctgccttctcctccacc 46
>ref|XM_381225.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG01049.1) partial mRNA Length = 22443 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 126 gaagaagctcaagaagcagg 145 |||||||||||||||||||| Sbjct: 8385 gaagaagctcaagaagcagg 8404
>gb|BC006769.2| Homo sapiens nucleolar and coiled-body phosphoprotein 1, mRNA (cDNA clone MGC:5049 IMAGE:2900024), complete cds Length = 3237 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 65 tggctgctgccttctcctcc 84 |||||||||||||||||||| Sbjct: 232 tggctgctgccttctcctcc 213
>gb|AC115709.11| Mus musculus chromosome 12, clone RP23-76M3, complete sequence Length = 193170 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 421 ggcttctacatcgctcctgctttc 444 ||||||| |||||||||||||||| Sbjct: 147044 ggcttctgcatcgctcctgctttc 147067
>emb|AL592301.14| Human DNA sequence from clone RP11-413M3 on chromosome 9 Contains the 3' end of the gene for activator of G-protein signalling 3 (AGS3), two novel genes, the CARD9 gene for caspase recruitment domain family member 9, the SNAPC4 gene for a 190kDa small nuclear RNA activating complex polypeptide 4, the SDCCAG3 gene for serologically defined colon cancer antigen 3, the INPP5E gene for a 72kDa inositol polyphosphate-5-phosphatase, the gene for phosphatidylinositol polyphosphate 5-phosphatase type IV (PPI5PIV), a novel gene (KIAA0310), the 3' end of the NOTCH1 gene for Notch homolog 1 translocation-associated (Drosophila) and twenty CpG islands, complete sequence Length = 188462 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 328 cccacgggcgacggcacccacgag 351 ||||||||||||| |||||||||| Sbjct: 166513 cccacgggcgacgtcacccacgag 166490
>emb|AL500527.19| Human DNA sequence from clone RP11-302K17 on chromosome 10 Contains the gene for Hermansky-Pudlak syndrome-6 protein (HPS6), two pseudogenes for transcription elongation factor B (SIII), polypeptide 1, the LDB1 gene for LIM domain binding 1, a novel gene (KIAA0595), the NOLC1 gene for nucleolar and coiled-body phosphoprotein 1 and five CpG islands, complete sequence Length = 158434 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 65 tggctgctgccttctcctcc 84 |||||||||||||||||||| Sbjct: 101054 tggctgctgccttctcctcc 101035
>gb|BT009750.1| Synthetic construct Homo sapiens nucleolar and coiled-body phosphoprotein 1 mRNA, partial cds Length = 2103 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 65 tggctgctgccttctcctcc 84 |||||||||||||||||||| Sbjct: 715 tggctgctgccttctcctcc 696
>gb|AC104422.4| Homo sapiens chromosome 18, clone RP11-260B14, complete sequence Length = 147210 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 290 ccagagggaagggcatcgtg 309 |||||||||||||||||||| Sbjct: 35948 ccagagggaagggcatcgtg 35967
>emb|CR602162.1| full-length cDNA clone CS0DI026YK04 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1812 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 65 tggctgctgccttctcctcc 84 |||||||||||||||||||| Sbjct: 717 tggctgctgccttctcctcc 698
>dbj|AK056755.1| Homo sapiens cDNA FLJ32193 fis, clone PLACE6002345, highly similar to H.sapiens mRNA for nucleolar phosphoprotein p130 Length = 2288 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 65 tggctgctgccttctcctcc 84 |||||||||||||||||||| Sbjct: 570 tggctgctgccttctcctcc 551
>gb|AC091237.6| Mus musculus Strain C57BL7/J Chromosome 14 RP23-470F15, complete sequence Length = 177104 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 58 acagagatggctgctgcctt 77 |||||||||||||||||||| Sbjct: 121162 acagagatggctgctgcctt 121143
>gb|AF197950.1| Canis familiaris androgen receptor (AR) mRNA, complete cds Length = 3577 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 170 gcaagagctccaaggccaac 189 |||||||||||||||||||| Sbjct: 3271 gcaagagctccaaggccaac 3290
>gb|AC100806.2| Homo sapiens chromosome 18, clone CTB-2341H11, complete sequence Length = 81641 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 290 ccagagggaagggcatcgtg 309 |||||||||||||||||||| Sbjct: 47211 ccagagggaagggcatcgtg 47230
>gb|AC154546.2| Mus musculus BAC clone RP23-431I7 from chromosome 16, complete sequence Length = 180261 Score = 40.1 bits (20), Expect = 6.1 Identities = 35/40 (87%) Strand = Plus / Plus Query: 41 aaggtcgaccaagcagcacagagatggctgctgccttctc 80 |||||| ||||| ||||||| || ||||||||||||||| Sbjct: 111680 aaggtccaccaatgagcacagtgagggctgctgccttctc 111719
>gb|AF308602.1|AF308602 Homo sapiens NOTCH 1 (N1) mRNA, complete cds Length = 7693 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 328 cccacgggcgacggcacccacgag 351 ||||||||||||| |||||||||| Sbjct: 703 cccacgggcgacgtcacccacgag 726
>gb|AC019012.4|AC019012 Genomic Sequence For Arabidopsis thaliana Clone T3J11 From Chromosome V, complete sequence Length = 130299 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 180 caaggccaacaggttcacagtcat 203 ||||||||||||||||| |||||| Sbjct: 13824 caaggccaacaggttcagagtcat 13847
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 261 cgatatctccgacgaccagc 280 |||||||||||||||||||| Sbjct: 4182002 cgatatctccgacgaccagc 4181983
>gb|AY891983.1| Synthetic construct Homo sapiens clone FLH024209.01L nucleolar and coiled-body phosphoprotein 1 (NOLC1) mRNA, partial cds Length = 2103 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 65 tggctgctgccttctcctcc 84 |||||||||||||||||||| Sbjct: 715 tggctgctgccttctcctcc 696
>emb|CR974583.24| Mouse DNA sequence from clone RP23-118G7 on chromosome 12, complete sequence Length = 219072 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 421 ggcttctacatcgctcctgctttc 444 ||||||| |||||||||||||||| Sbjct: 141825 ggcttctgcatcgctcctgctttc 141848
>gb|AC018660.1|AC018660 Genomic Sequence For Arabidopsis thaliana Clone F11P10, Chromosome V, complete sequence Length = 105589 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 180 caaggccaacaggttcacagtcat 203 ||||||||||||||||| |||||| Sbjct: 27506 caaggccaacaggttcagagtcat 27483
>gb|AC134613.5| Mus musculus BAC clone RP23-133J23 from 8, complete sequence Length = 187148 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 127 aagaagctcaagaagcaggt 146 |||||||||||||||||||| Sbjct: 44669 aagaagctcaagaagcaggt 44650
>gb|AC153897.4| Mus musculus 10 BAC RP23-119E2 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 209755 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 65 tggctgctgccttctcctcc 84 |||||||||||||||||||| Sbjct: 46900 tggctgctgccttctcctcc 46919
>gb|AF052424.1|AF052424 Datisca glomerata rubisco activase precursor, gene, partial cds Length = 1216 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 424 ttctacatcgctcctgctttcatggaca 451 |||||||| ||||| ||||||||||||| Sbjct: 6 ttctacatagctccagctttcatggaca 33
>gb|AF047352.1|AF047352 Datisca glomerata rubisco activase precursor, mRNA, complete cds Length = 1634 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 424 ttctacatcgctcctgctttcatggaca 451 |||||||| ||||| ||||||||||||| Sbjct: 476 ttctacatagctccagctttcatggaca 503
>dbj|D21262.1|HUMORFGA Homo sapiens KIAA0035 mRNA, partial cds Length = 3727 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 65 tggctgctgccttctcctcc 84 |||||||||||||||||||| Sbjct: 708 tggctgctgccttctcctcc 689
>dbj|AP003156.1| Mus musculus genomic DNA, chromosome 16q clone:RP21-56O15, complete sequences Length = 162128 Score = 40.1 bits (20), Expect = 6.1 Identities = 35/40 (87%) Strand = Plus / Minus Query: 41 aaggtcgaccaagcagcacagagatggctgctgccttctc 80 |||||| ||||| ||||||| || ||||||||||||||| Sbjct: 108212 aaggtccaccaatgagcacagtgagggctgctgccttctc 108173
>gb|AE008692.1| Zymomonas mobilis subsp. mobilis ZM4, complete genome Length = 2056416 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 61 gagatggctgctgccttctcctcc 84 ||||||||||||||||||| |||| Sbjct: 472845 gagatggctgctgccttctgctcc 472822
>gb|M73980.1|HUMTAN1 Human TAN-1 mRNA (homologue of Drosophila Notch gene), 5' end Length = 7332 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 328 cccacgggcgacggcacccacgag 351 ||||||||||||| |||||||||| Sbjct: 703 cccacgggcgacgtcacccacgag 726
>emb|Z34289.1|HSNUCPP H.sapiens mRNA for nucleolar phosphoprotein p130 Length = 2502 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 65 tggctgctgccttctcctcc 84 |||||||||||||||||||| Sbjct: 766 tggctgctgccttctcctcc 747 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,314,179 Number of Sequences: 3902068 Number of extensions: 3314179 Number of successful extensions: 61893 Number of sequences better than 10.0: 99 Number of HSP's better than 10.0 without gapping: 99 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 61485 Number of HSP's gapped (non-prelim): 401 length of query: 451 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 429 effective length of database: 17,147,199,772 effective search space: 7356148702188 effective search space used: 7356148702188 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
