ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal14e06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SWC4_USTMA (Q4PG15) SWR1-complex protein 4 30 2.2
2ASM_MOUSE (Q04519) Sphingomyelin phosphodiesterase precursor (EC... 29 3.8
3ASM_HUMAN (P17405) Sphingomyelin phosphodiesterase precursor (EC... 28 5.0
4ADG3_SCHPO (O74851) Protein adg3 precursor 28 6.5
5HLES_DROME (Q02308) Protein hairless 28 6.5

>SWC4_USTMA (Q4PG15) SWR1-complex protein 4|
          Length = 615

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +2

Query: 77  QPRPRIDGSTQAASTLCAPPTTSSAATGNQRAEMKPVVGI 196
           +P+P+ DG T+    L      S A T    AE KPV+G+
Sbjct: 52  RPKPKYDGMTRELFALLGDNAPSLAMTHGLDAEGKPVMGL 91



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>ASM_MOUSE (Q04519) Sphingomyelin phosphodiesterase precursor (EC 3.1.4.12)|
           (Acid sphingomyelinase) (aSMase)
          Length = 627

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 16/50 (32%), Positives = 18/50 (36%), Gaps = 12/50 (24%)
 Frame = -2

Query: 206 STPRYPPLASSPPA------------DYRWRRKRWSGEHRESTQPACCRR 93
           S P+ PP   SPPA            D  W  +   G       P CCRR
Sbjct: 178 SVPKPPPKPPSPPAPGAPVSRVLFLTDLHWDHEYLEGTDPYCADPLCCRR 227



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>ASM_HUMAN (P17405) Sphingomyelin phosphodiesterase precursor (EC 3.1.4.12)|
           (Acid sphingomyelinase) (aSMase)
          Length = 629

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 15/50 (30%), Positives = 18/50 (36%), Gaps = 12/50 (24%)
 Frame = -2

Query: 206 STPRYPPLASSPPA------------DYRWRRKRWSGEHRESTQPACCRR 93
           + P+ PP   SPPA            D  W      G   +   P CCRR
Sbjct: 180 TVPKPPPKPPSPPAPGAPVSRILFLTDLHWDHDYLEGTDPDCADPLCCRR 229



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>ADG3_SCHPO (O74851) Protein adg3 precursor|
          Length = 1131

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +2

Query: 83  RPRIDGSTQAASTLCAPPTTSSAATGN 163
           R  IDGS  ++S   A PT SS+ TG+
Sbjct: 434 RSSIDGSASSSSASLAVPTVSSSTTGS 460



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>HLES_DROME (Q02308) Protein hairless|
          Length = 1077

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +2

Query: 80  PRPRIDGSTQAASTLCAPPTTSSAA 154
           P P+++G+  A S   APPT++S+A
Sbjct: 855 PPPQVNGNGSAGSPTSAPPTSNSSA 879


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,492,214
Number of Sequences: 219361
Number of extensions: 411326
Number of successful extensions: 1353
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1352
length of database: 80,573,946
effective HSP length: 47
effective length of database: 70,263,979
effective search space used: 1686335496
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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