| Clone Name | baal13o23 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 192 bits (97), Expect = 8e-46 Identities = 118/125 (94%) Strand = Plus / Plus Query: 61 gatgacgcggggaaagcagaagatcgacgcgcagcggaagagcgcggagaagaaccagaa 120 |||||||||||| |||||||||||||| ||||||||| || |||||||||||||||||| Sbjct: 23910461 gatgacgcgggggaagcagaagatcgatgcgcagcggcggaacgcggagaagaaccagaa 23910520 Query: 121 gtccaaggggtcccagctcgaggcccgcgccgtcggcctcaaggtcgtctgccccatctg 180 ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 23910521 gtcgaaggggtcccagctcgaggcccgcgccgtcggcctcaaggtcatctgccccatctg 23910580 Query: 181 caagg 185 ||||| Sbjct: 23910581 caagg 23910585 Score = 75.8 bits (38), Expect = 1e-10 Identities = 56/62 (90%) Strand = Plus / Plus Query: 188 caactagccaacgagaagcaattgattgatcactatggatcaaagcaccccagggagaaa 247 ||||| ||||| ||||| ||||||||||||||||||||||||||||| |||| ||| ||| Sbjct: 23911961 caactggccaatgagaaacaattgattgatcactatggatcaaagcatcccaaggaaaaa 23912020 Query: 248 cc 249 || Sbjct: 23912021 cc 23912022 Score = 46.1 bits (23), Expect = 0.11 Identities = 32/35 (91%) Strand = Plus / Plus Query: 372 aatgtatgcatttcctcttgttccaggcaagagcc 406 |||||||||||||||||||||| | ||| |||||| Sbjct: 23912143 aatgtatgcatttcctcttgtttctggctagagcc 23912177
>dbj|AP006438.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0030C08 Length = 163423 Score = 192 bits (97), Expect = 8e-46 Identities = 118/125 (94%) Strand = Plus / Plus Query: 61 gatgacgcggggaaagcagaagatcgacgcgcagcggaagagcgcggagaagaaccagaa 120 |||||||||||| |||||||||||||| ||||||||| || |||||||||||||||||| Sbjct: 132127 gatgacgcgggggaagcagaagatcgatgcgcagcggcggaacgcggagaagaaccagaa 132186 Query: 121 gtccaaggggtcccagctcgaggcccgcgccgtcggcctcaaggtcgtctgccccatctg 180 ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 132187 gtcgaaggggtcccagctcgaggcccgcgccgtcggcctcaaggtcatctgccccatctg 132246 Query: 181 caagg 185 ||||| Sbjct: 132247 caagg 132251 Score = 75.8 bits (38), Expect = 1e-10 Identities = 56/62 (90%) Strand = Plus / Plus Query: 188 caactagccaacgagaagcaattgattgatcactatggatcaaagcaccccagggagaaa 247 ||||| ||||| ||||| ||||||||||||||||||||||||||||| |||| ||| ||| Sbjct: 133627 caactggccaatgagaaacaattgattgatcactatggatcaaagcatcccaaggaaaaa 133686 Query: 248 cc 249 || Sbjct: 133687 cc 133688 Score = 46.1 bits (23), Expect = 0.11 Identities = 32/35 (91%) Strand = Plus / Plus Query: 372 aatgtatgcatttcctcttgttccaggcaagagcc 406 |||||||||||||||||||||| | ||| |||||| Sbjct: 133809 aatgtatgcatttcctcttgtttctggctagagcc 133843
>dbj|AP004881.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0496E03 Length = 138622 Score = 192 bits (97), Expect = 8e-46 Identities = 118/125 (94%) Strand = Plus / Plus Query: 61 gatgacgcggggaaagcagaagatcgacgcgcagcggaagagcgcggagaagaaccagaa 120 |||||||||||| |||||||||||||| ||||||||| || |||||||||||||||||| Sbjct: 44425 gatgacgcgggggaagcagaagatcgatgcgcagcggcggaacgcggagaagaaccagaa 44484 Query: 121 gtccaaggggtcccagctcgaggcccgcgccgtcggcctcaaggtcgtctgccccatctg 180 ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 44485 gtcgaaggggtcccagctcgaggcccgcgccgtcggcctcaaggtcatctgccccatctg 44544 Query: 181 caagg 185 ||||| Sbjct: 44545 caagg 44549 Score = 75.8 bits (38), Expect = 1e-10 Identities = 56/62 (90%) Strand = Plus / Plus Query: 188 caactagccaacgagaagcaattgattgatcactatggatcaaagcaccccagggagaaa 247 ||||| ||||| ||||| ||||||||||||||||||||||||||||| |||| ||| ||| Sbjct: 45925 caactggccaatgagaaacaattgattgatcactatggatcaaagcatcccaaggaaaaa 45984 Query: 248 cc 249 || Sbjct: 45985 cc 45986 Score = 46.1 bits (23), Expect = 0.11 Identities = 32/35 (91%) Strand = Plus / Plus Query: 372 aatgtatgcatttcctcttgttccaggcaagagcc 406 |||||||||||||||||||||| | ||| |||||| Sbjct: 46107 aatgtatgcatttcctcttgtttctggctagagcc 46141
>dbj|AK121308.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023112A22, full insert sequence Length = 1947 Score = 192 bits (97), Expect = 8e-46 Identities = 118/125 (94%) Strand = Plus / Plus Query: 61 gatgacgcggggaaagcagaagatcgacgcgcagcggaagagcgcggagaagaaccagaa 120 |||||||||||| |||||||||||||| ||||||||| || |||||||||||||||||| Sbjct: 93 gatgacgcgggggaagcagaagatcgatgcgcagcggcggaacgcggagaagaaccagaa 152 Query: 121 gtccaaggggtcccagctcgaggcccgcgccgtcggcctcaaggtcgtctgccccatctg 180 ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 153 gtcgaaggggtcccagctcgaggcccgcgccgtcggcctcaaggtcatctgccccatctg 212 Query: 181 caagg 185 ||||| Sbjct: 213 caagg 217 Score = 75.8 bits (38), Expect = 1e-10 Identities = 56/62 (90%) Strand = Plus / Plus Query: 188 caactagccaacgagaagcaattgattgatcactatggatcaaagcaccccagggagaaa 247 ||||| ||||| ||||| ||||||||||||||||||||||||||||| |||| ||| ||| Sbjct: 1593 caactggccaatgagaaacaattgattgatcactatggatcaaagcatcccaaggaaaaa 1652 Query: 248 cc 249 || Sbjct: 1653 cc 1654 Score = 46.1 bits (23), Expect = 0.11 Identities = 32/35 (91%) Strand = Plus / Plus Query: 372 aatgtatgcatttcctcttgttccaggcaagagcc 406 |||||||||||||||||||||| | ||| |||||| Sbjct: 1775 aatgtatgcatttcctcttgtttctggctagagcc 1809
>gb|AY110825.1| Zea mays CL16923_1 mRNA sequence Length = 772 Score = 149 bits (75), Expect = 1e-32 Identities = 114/127 (89%) Strand = Plus / Plus Query: 59 gggatgacgcggggaaagcagaagatcgacgcgcagcggaagagcgcggagaagaaccag 118 ||||||||||| || |||||||||||||||||||||||| | ||||||| |||||| Sbjct: 109 gggatgacgcgcgggaagcagaagatcgacgcgcagcggcgtaacgcggagcgaaaccag 168 Query: 119 aagtccaaggggtcccagctcgaggcccgcgccgtcggcctcaaggtcgtctgccccatc 178 || ||||||||||| |||||||||||||||||||||||||||||| |||||||| ||||| Sbjct: 169 aaatccaaggggtctcagctcgaggcccgcgccgtcggcctcaagatcgtctgctccatc 228 Query: 179 tgcaagg 185 ||||||| Sbjct: 229 tgcaagg 235 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Plus Query: 215 gatcactatggatcaaagcaccccagggagaaacctcc 252 |||||||||||||||||||| || | |||||||||||| Sbjct: 265 gatcactatggatcaaagcatccaaaggagaaacctcc 302
>gb|AC183833.2| Pan troglodytes BAC clone CH251-141C5 from chromosome 7, complete sequence Length = 155911 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Minus Query: 233 caccccagggagaaacctccag 254 |||||||||||||||||||||| Sbjct: 130371 caccccagggagaaacctccag 130350
>gb|AC099398.5| Homo sapiens BAC clone RP11-731K22 from 7, complete sequence Length = 86311 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Minus Query: 233 caccccagggagaaacctccag 254 |||||||||||||||||||||| Sbjct: 24307 caccccagggagaaacctccag 24286
>emb|AJ307325.1|HIM307325 Human immunodeficiency virus type 1 viral partial pro gene for protease, patient 29-0 Length = 297 Score = 44.1 bits (22), Expect = 0.45 Identities = 25/26 (96%) Strand = Plus / Minus Query: 427 ttctatgagtatcttgtcaaactgtc 452 ||||||||||||||||||| |||||| Sbjct: 195 ttctatgagtatcttgtcatactgtc 170
>gb|BC075233.1| Xenopus laevis MGC84425 protein, mRNA (cDNA clone MGC:84425 IMAGE:7019446), complete cds Length = 1320 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 259 atcaaatgcagagtaactgat 279 ||||||||||||||||||||| Sbjct: 1180 atcaaatgcagagtaactgat 1160
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 149 gccgtcggcctcaaggtcgtc 169 ||||||||||||||||||||| Sbjct: 1415013 gccgtcggcctcaaggtcgtc 1414993
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome Length = 3561584 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 148 cgccgtcggcctcaaggtcgt 168 ||||||||||||||||||||| Sbjct: 203733 cgccgtcggcctcaaggtcgt 203753
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 99 agagcgcggagaagaaccaga 119 ||||||||||||||||||||| Sbjct: 23573707 agagcgcggagaagaaccaga 23573687
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 134 cagctcgaggcccgcgccgtcggcc 158 ||||||||||||||||||| ||||| Sbjct: 5404777 cagctcgaggcccgcgccgccggcc 5404753
>dbj|AP003278.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0518F01 Length = 154541 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 99 agagcgcggagaagaaccaga 119 ||||||||||||||||||||| Sbjct: 36406 agagcgcggagaagaaccaga 36386
>dbj|AP003504.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0025A05 Length = 154298 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 99 agagcgcggagaagaaccaga 119 ||||||||||||||||||||| Sbjct: 137012 agagcgcggagaagaaccaga 136992
>dbj|AK102895.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033112N23, full insert sequence Length = 2100 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 99 agagcgcggagaagaaccaga 119 ||||||||||||||||||||| Sbjct: 361 agagcgcggagaagaaccaga 341
>dbj|AK067562.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013112G07, full insert sequence Length = 2074 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 99 agagcgcggagaagaaccaga 119 ||||||||||||||||||||| Sbjct: 360 agagcgcggagaagaaccaga 340
>gb|AC114608.5| Mus musculus chromosome 8, clone RP23-418L5, complete sequence Length = 190200 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 308 tgtttctgaggctgctcagtctgc 331 ||||||||||||||||||| |||| Sbjct: 94145 tgtttctgaggctgctcagactgc 94122
>ref|XM_362883.1| Magnaporthe grisea 70-15 hypothetical protein (MG08554.4) partial cds Length = 1692 Score = 40.1 bits (20), Expect = 7.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 145 ccgcgccgtcggcctcaaggtcgtctgc 172 ||||| ||||||| |||||||||||||| Sbjct: 942 ccgcgtcgtcggcatcaaggtcgtctgc 969
>ref|XM_419261.1| PREDICTED: Gallus gallus similar to hypothetical protein (LOC421181), mRNA Length = 1716 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 89 gcgcagcggaagagcgcggagaag 112 ||||||||| |||||||||||||| Sbjct: 122 gcgcagcggcagagcgcggagaag 99
>gb|BC003793.1| Mus musculus phosphotriesterase related, mRNA (cDNA clone MGC:6034 IMAGE:3601675), complete cds Length = 1707 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 427 ttctatgagtatcttgtcaa 446 |||||||||||||||||||| Sbjct: 1112 ttctatgagtatcttgtcaa 1093
>ref|NG_003770.1| Rattus norvegicus olfactory receptor pseudogene 874 (Olr874-ps) on chromosome 6 Length = 888 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 483 cctttggataagagaatgct 502 |||||||||||||||||||| Sbjct: 585 cctttggataagagaatgct 566
>gb|AC124475.3| Mus musculus BAC clone RP24-92F8 from chromosome 8, complete sequence Length = 212858 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 308 tgtttctgaggctgctcagtctgc 331 ||||||||||||||||||| |||| Sbjct: 196007 tgtttctgaggctgctcagactgc 196030
>emb|BX571772.8| Zebrafish DNA sequence from clone CH211-238E12 in linkage group 5, complete sequence Length = 125812 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 378 tgcatttcctcttgttccaggcaa 401 ||||||||||||||| |||||||| Sbjct: 5375 tgcatttcctcttgtaccaggcaa 5352
>emb|AL589740.4| Human DNA sequence from clone RP11-436D23 on chromosome 6 Contains part of a novel gene, complete sequence Length = 187863 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 411 tgagcatgtatttgccttct 430 |||||||||||||||||||| Sbjct: 2763 tgagcatgtatttgccttct 2744
>ref|NM_008961.2| Mus musculus phosphotriesterase related (Pter), mRNA Length = 3620 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 427 ttctatgagtatcttgtcaa 446 |||||||||||||||||||| Sbjct: 1204 ttctatgagtatcttgtcaa 1185
>ref|XM_682958.1| PREDICTED: Danio rerio similar to voltage-gated calcium channel subunit Cav2.2 variant I (LOC559600), mRNA Length = 2004 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 378 tgcatttcctcttgttccaggcaa 401 ||||||||||||||| |||||||| Sbjct: 1243 tgcatttcctcttgtaccaggcaa 1220
>ref|XM_678505.1| PREDICTED: Danio rerio similar to voltage-gated calcium channel subunit Cav2.2 variant I (LOC555860), partial mRNA Length = 1167 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 378 tgcatttcctcttgttccaggcaa 401 ||||||||||||||| |||||||| Sbjct: 295 tgcatttcctcttgtaccaggcaa 272
>gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome Length = 5751492 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 167 gtctgccccatctgcaaggc 186 |||||||||||||||||||| Sbjct: 1991260 gtctgccccatctgcaaggc 1991279
>dbj|AK075604.1| Mus musculus adult male kidney cDNA, RIKEN full-length enriched library, clone:0610042L23 product:phosphotriesterase related, full insert sequence Length = 3557 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 427 ttctatgagtatcttgtcaa 446 |||||||||||||||||||| Sbjct: 1142 ttctatgagtatcttgtcaa 1123
>gb|AC102608.14| Mus musculus chromosome 3, clone RP23-402L6, complete sequence Length = 185014 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 15 gaaggagtcggaggcagaag 34 |||||||||||||||||||| Sbjct: 178927 gaaggagtcggaggcagaag 178946
>gb|AC102466.11| Mus musculus chromosome 3, clone RP24-337A2, complete sequence Length = 164455 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 15 gaaggagtcggaggcagaag 34 |||||||||||||||||||| Sbjct: 161330 gaaggagtcggaggcagaag 161311
>emb|AL929209.17| Mouse DNA sequence from clone RP23-415C3 on chromosome 2, complete sequence Length = 210790 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 427 ttctatgagtatcttgtcaa 446 |||||||||||||||||||| Sbjct: 25886 ttctatgagtatcttgtcaa 25867
>gb|U28016.1|MMU28016 Mus musculus parathion hydrolase (phosphotriesterase)-related protein mRNA, complete cds Length = 1697 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 427 ttctatgagtatcttgtcaa 446 |||||||||||||||||||| Sbjct: 1121 ttctatgagtatcttgtcaa 1102
>emb|AL831735.10| Mouse DNA sequence from clone RP23-452D3 on chromosome 2, complete sequence Length = 193718 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 310 tttctgaggctgctcagtct 329 |||||||||||||||||||| Sbjct: 176757 tttctgaggctgctcagtct 176776
>dbj|AB045983.1| Mus musculus gene for gliacolin, complete cds Length = 11031 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 427 ttctatgagtatcttgtcaa 446 |||||||||||||||||||| Sbjct: 10513 ttctatgagtatcttgtcaa 10532 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,941,253 Number of Sequences: 3902068 Number of extensions: 3941253 Number of successful extensions: 122487 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 36 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 122231 Number of HSP's gapped (non-prelim): 255 length of query: 519 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 496 effective length of database: 17,143,297,704 effective search space: 8503075661184 effective search space used: 8503075661184 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)