ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal13o21 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY736118.1| Triticum aestivum 20S proteasome beta 4 subunit mRNA, complete cds Length = 654 Score = 529 bits (267), Expect = e-147 Identities = 307/319 (96%), Gaps = 1/319 (0%) Strand = Plus / Plus Query: 4 ggtgcatcgatgtactacattgactacatcgcgacactccacaagnatcgacaagggagc 63 ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| Sbjct: 331 ggtgcatcgatgtactacattgactacatcgcgacgctccacaag-atcgacaagggagc 389 Query: 64 atttgggtacgggtcgtacttctgtttgtcgctgatggacaagttgtaccaccctgacat 123 ||| ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| Sbjct: 390 attcgggtacgggtcgtacttctgtctgtcgctgatggacaagttgtaccgccctgacat 449 Query: 124 gactgtcgaggaagcggtagaccttgttgacaagtgcatcaaggagatcagactccggct 183 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 450 gactgtcgaggaagcggtagaccttgttgacaagtgcatcaaggagatcagactccggct 509 Query: 184 ggtcgtcgcgcctcagaatttcgccatcaagattgtggacaaggatggcgccagggacta 243 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 510 ggtcgtcgcgcctcagaatttcgccatcaagatcgtggacaaggatggcgccagggacta 569 Query: 244 tgctaggcgtgagatcggaggtgacagtcctgcagccgcaaccacagccgcaacagtagc 303 ||||||||||||||| ||||||||||||||||||| | ||||| || |||||||| |||| Sbjct: 570 tgctaggcgtgagataggaggtgacagtcctgcagtcacaaccgcaaccgcaacaatagc 629 Query: 304 aacaactgcctgaggtgat 322 ||||||||||||||||||| Sbjct: 630 aacaactgcctgaggtgat 648
>gb|AY746978.1| Zea mays putative beta 4 proteasome subunit mRNA, complete cds Length = 931 Score = 180 bits (91), Expect = 3e-42 Identities = 166/191 (86%) Strand = Plus / Plus Query: 65 tttgggtacgggtcgtacttctgtttgtcgctgatggacaagttgtaccaccctgacatg 124 ||||||||||| || |||||||||||||| || |||||||||||||||||||| |||||| Sbjct: 480 tttgggtacggatcatacttctgtttgtctcttatggacaagttgtaccacccggacatg 539 Query: 125 actgtcgaggaagcggtagaccttgttgacaagtgcatcaaggagatcagactccggctg 184 ||||| ||||||||||||||||| ||||| |||||||| ||||||||| | || |||||| Sbjct: 540 actgttgaggaagcggtagacctcgttgataagtgcattaaggagatccggctgcggctg 599 Query: 185 gtcgtcgcgcctcagaatttcgccatcaagattgtggacaaggatggcgccagggactat 244 || || ||||| ||||| |||| |||||||| || |||||||| || |||||||| || Sbjct: 600 gttgtggcgccccagaacttcgtgatcaagatcgtcgacaaggacggggccagggagtac 659 Query: 245 gctaggcgtga 255 || |||||||| Sbjct: 660 gcgaggcgtga 670
>gb|BT017976.1| Zea mays clone EL01N0524H02.c mRNA sequence Length = 922 Score = 176 bits (89), Expect = 4e-41 Identities = 201/237 (84%), Gaps = 1/237 (0%) Strand = Plus / Plus Query: 4 ggtgcatcgatgtactacattgactacatcgcgacactccacaagnatcgacaagggagc 63 ||||| ||| |||||||||| |||||||| ||||| | |||||| ||||||||||| || Sbjct: 483 ggtgcctcgctgtactacatcgactacattgcgaccttgcacaag-atcgacaagggcgc 541 Query: 64 atttgggtacgggtcgtacttctgtttgtcgctgatggacaagttgtaccaccctgacat 123 ||||||||||| ||||| ||||| |||| |||||||||||| |||||| ||| ||||| Sbjct: 542 ttttgggtacggatcgtatttctgcctgtctctgatggacaagctgtaccgcccggacat 601 Query: 124 gactgtcgaggaagcggtagaccttgttgacaagtgcatcaaggagatcagactccggct 183 ||| || |||||||||||||| || |||||||||||||| ||||||||| | || ||||| Sbjct: 602 gaccgttgaggaagcggtagatctcgttgacaagtgcattaaggagatccggctgcggct 661 Query: 184 ggtcgtcgcgcctcagaatttcgccatcaagattgtggacaaggatggcgccaggga 240 ||| || ||||| ||||| |||| |||||||| || |||||||| || |||||||| Sbjct: 662 ggttgtggcgccccagaacttcgtgatcaagatcgtagacaaggacggggccaggga 718
>gb|BT017738.1| Zea mays clone EL01N0449B05.c mRNA sequence Length = 944 Score = 172 bits (87), Expect = 7e-40 Identities = 165/191 (86%) Strand = Plus / Plus Query: 65 tttgggtacgggtcgtacttctgtttgtcgctgatggacaagttgtaccaccctgacatg 124 ||||||||||| || |||||||||||||| || |||||||||||||||||||| |||||| Sbjct: 430 tttgggtacggatcatacttctgtttgtctcttatggacaagttgtaccacccggacatg 489 Query: 125 actgtcgaggaagcggtagaccttgttgacaagtgcatcaaggagatcagactccggctg 184 ||||| |||||||| ||||| |||||||||||||||||||||||||| | || || || Sbjct: 490 actgttgaggaagcagtagatcttgttgacaagtgcatcaaggagattcggctgcgattg 549 Query: 185 gtcgtcgcgcctcagaatttcgccatcaagattgtggacaaggatggcgccagggactat 244 || |||||||||||||| || | ||||||||||| |||||||| || || ||||| || Sbjct: 550 gttgtcgcgcctcagaactttgttatcaagattgttgacaaggacggggcgagggagtac 609 Query: 245 gctaggcgtga 255 || |||||||| Sbjct: 610 gccaggcgtga 620
>gb|AY104366.1| Zea mays PCO066933 mRNA sequence Length = 1048 Score = 172 bits (87), Expect = 7e-40 Identities = 165/191 (86%) Strand = Plus / Plus Query: 65 tttgggtacgggtcgtacttctgtttgtcgctgatggacaagttgtaccaccctgacatg 124 ||||||||||| || |||||||||||||| || |||||||||||||||||||| |||||| Sbjct: 540 tttgggtacggatcatacttctgtttgtctcttatggacaagttgtaccacccggacatg 599 Query: 125 actgtcgaggaagcggtagaccttgttgacaagtgcatcaaggagatcagactccggctg 184 ||||| |||||||| ||||| |||||||||||||||||||||||||| | || || || Sbjct: 600 actgttgaggaagcagtagatcttgttgacaagtgcatcaaggagattcggctgcgattg 659 Query: 185 gtcgtcgcgcctcagaatttcgccatcaagattgtggacaaggatggcgccagggactat 244 || |||||||||||||| || | ||||||||||| |||||||| || || ||||| || Sbjct: 660 gttgtcgcgcctcagaactttgttatcaagattgttgacaaggacggggcgagggagtac 719 Query: 245 gctaggcgtga 255 || |||||||| Sbjct: 720 gccaggcgtga 730
>gb|BT017659.1| Zea mays clone EL01N0440E05.c mRNA sequence Length = 995 Score = 165 bits (83), Expect = 2e-37 Identities = 164/191 (85%) Strand = Plus / Plus Query: 65 tttgggtacgggtcgtacttctgtttgtcgctgatggacaagttgtaccaccctgacatg 124 ||||||||||| || |||||||||||| | || |||||||||||||||||||| |||||| Sbjct: 467 tttgggtacggatcatacttctgtttggctcttatggacaagttgtaccacccggacatg 526 Query: 125 actgtcgaggaagcggtagaccttgttgacaagtgcatcaaggagatcagactccggctg 184 ||||| |||||||| ||||| |||||||||||||||||||||||||| | || || || Sbjct: 527 actgttgaggaagcagtagatcttgttgacaagtgcatcaaggagattcggctgcgattg 586 Query: 185 gtcgtcgcgcctcagaatttcgccatcaagattgtggacaaggatggcgccagggactat 244 || |||||||||||||| || | ||||||||||| |||||||| || || ||||| || Sbjct: 587 gttgtcgcgcctcagaactttgttatcaagattgttgacaaggacggggcgagggagtac 646 Query: 245 gctaggcgtga 255 || |||||||| Sbjct: 647 gccaggcgtga 657
>ref|XM_469367.1| Oryza sativa (japonica cultivar-group), mRNA Length = 885 Score = 105 bits (53), Expect = 1e-19 Identities = 195/241 (80%), Gaps = 1/241 (0%) Strand = Plus / Plus Query: 14 tgtactacattgactacatcgcgacactccacaagnatcgacaagggagcatttgggtac 73 |||| ||||||||||||||||| ||| |||| ||| ||||| ||||| || |||||||| Sbjct: 417 tgtattacattgactacatcgcaacattccataag-atcgaaaagggtgcctttgggtat 475 Query: 74 gggtcgtacttctgtttgtcgctgatggacaagttgtaccaccctgacatgactgtcgag 133 || || ||||||||| | ||||||||||||||||| || | || |||||| | |||||| Sbjct: 476 ggctcctacttctgtctctcgctgatggacaagttatatcgtccagacatgtcagtcgag 535 Query: 134 gaagcggtagaccttgttgacaagtgcatcaaggagatcagactccggctggtcgtcgcg 193 ||||| || || ||||||||||||||||| || || || | ||| || ||||||| || Sbjct: 536 gaagctgttgatcttgttgacaagtgcattaaagaaattcggctcaggttggtcgttgct 595 Query: 194 cctcagaatttcgccatcaagattgtggacaaggatggcgccagggactatgctaggcgt 253 ||||| || ||| ||||||||||| || || || || || ||||| ||||| |||||| Sbjct: 596 cctcaaaacttcataatcaagattgttgataaagagggtgctagggagtatgccaggcgt 655 Query: 254 g 254 | Sbjct: 656 g 656
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 105 bits (53), Expect = 1e-19 Identities = 195/241 (80%), Gaps = 1/241 (0%) Strand = Plus / Minus Query: 14 tgtactacattgactacatcgcgacactccacaagnatcgacaagggagcatttgggtac 73 |||| ||||||||||||||||| ||| |||| ||| ||||| ||||| || |||||||| Sbjct: 27567830 tgtattacattgactacatcgcaacattccataag-atcgaaaagggtgcctttgggtat 27567772 Query: 74 gggtcgtacttctgtttgtcgctgatggacaagttgtaccaccctgacatgactgtcgag 133 || || ||||||||| | ||||||||||||||||| || | || |||||| | |||||| Sbjct: 27567771 ggctcctacttctgtctctcgctgatggacaagttatatcgtccagacatgtcagtcgag 27567712 Query: 134 gaagcggtagaccttgttgacaagtgcatcaaggagatcagactccggctggtcgtcgcg 193 ||||| || || ||||||||||||||||| || || || | ||| || ||||||| || Sbjct: 27567711 gaagctgttgatcttgttgacaagtgcattaaagaaattcggctcaggttggtcgttgct 27567652 Query: 194 cctcagaatttcgccatcaagattgtggacaaggatggcgccagggactatgctaggcgt 253 ||||| || ||| ||||||||||| || || || || || ||||| ||||| |||||| Sbjct: 27567651 cctcaaaacttcataatcaagattgttgataaagagggtgctagggagtatgccaggcgt 27567592 Query: 254 g 254 | Sbjct: 27567591 g 27567591
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 105 bits (53), Expect = 1e-19 Identities = 195/241 (80%), Gaps = 1/241 (0%) Strand = Plus / Minus Query: 14 tgtactacattgactacatcgcgacactccacaagnatcgacaagggagcatttgggtac 73 |||| ||||||||||||||||| ||| |||| ||| ||||| ||||| || |||||||| Sbjct: 27659153 tgtattacattgactacatcgcaacattccataag-atcgaaaagggtgcctttgggtat 27659095 Query: 74 gggtcgtacttctgtttgtcgctgatggacaagttgtaccaccctgacatgactgtcgag 133 || || ||||||||| | ||||||||||||||||| || | || |||||| | |||||| Sbjct: 27659094 ggctcctacttctgtctctcgctgatggacaagttatatcgtccagacatgtcagtcgag 27659035 Query: 134 gaagcggtagaccttgttgacaagtgcatcaaggagatcagactccggctggtcgtcgcg 193 ||||| || || ||||||||||||||||| || || || | ||| || ||||||| || Sbjct: 27659034 gaagctgttgatcttgttgacaagtgcattaaagaaattcggctcaggttggtcgttgct 27658975 Query: 194 cctcagaatttcgccatcaagattgtggacaaggatggcgccagggactatgctaggcgt 253 ||||| || ||| ||||||||||| || || || || || ||||| ||||| |||||| Sbjct: 27658974 cctcaaaacttcataatcaagattgttgataaagagggtgctagggagtatgccaggcgt 27658915 Query: 254 g 254 | Sbjct: 27658914 g 27658914
>gb|AC123974.6| Oryza sativa chromosome 3 BAC OSJNBb0021P10 genomic sequence, complete sequence Length = 136982 Score = 105 bits (53), Expect = 1e-19 Identities = 195/241 (80%), Gaps = 1/241 (0%) Strand = Plus / Minus Query: 14 tgtactacattgactacatcgcgacactccacaagnatcgacaagggagcatttgggtac 73 |||| ||||||||||||||||| ||| |||| ||| ||||| ||||| || |||||||| Sbjct: 9527 tgtattacattgactacatcgcaacattccataag-atcgaaaagggtgcctttgggtat 9469 Query: 74 gggtcgtacttctgtttgtcgctgatggacaagttgtaccaccctgacatgactgtcgag 133 || || ||||||||| | ||||||||||||||||| || | || |||||| | |||||| Sbjct: 9468 ggctcctacttctgtctctcgctgatggacaagttatatcgtccagacatgtcagtcgag 9409 Query: 134 gaagcggtagaccttgttgacaagtgcatcaaggagatcagactccggctggtcgtcgcg 193 ||||| || || ||||||||||||||||| || || || | ||| || ||||||| || Sbjct: 9408 gaagctgttgatcttgttgacaagtgcattaaagaaattcggctcaggttggtcgttgct 9349 Query: 194 cctcagaatttcgccatcaagattgtggacaaggatggcgccagggactatgctaggcgt 253 ||||| || ||| ||||||||||| || || || || || ||||| ||||| |||||| Sbjct: 9348 cctcaaaacttcataatcaagattgttgataaagagggtgctagggagtatgccaggcgt 9289 Query: 254 g 254 | Sbjct: 9288 g 9288
>dbj|AK105847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-203-G05, full insert sequence Length = 1250 Score = 105 bits (53), Expect = 1e-19 Identities = 195/241 (80%), Gaps = 1/241 (0%) Strand = Plus / Plus Query: 14 tgtactacattgactacatcgcgacactccacaagnatcgacaagggagcatttgggtac 73 |||| ||||||||||||||||| ||| |||| ||| ||||| ||||| || |||||||| Sbjct: 830 tgtattacattgactacatcgcaacattccataag-atcgaaaagggtgcctttgggtat 888 Query: 74 gggtcgtacttctgtttgtcgctgatggacaagttgtaccaccctgacatgactgtcgag 133 || || ||||||||| | ||||||||||||||||| || | || |||||| | |||||| Sbjct: 889 ggctcctacttctgtctctcgctgatggacaagttatatcgtccagacatgtcagtcgag 948 Query: 134 gaagcggtagaccttgttgacaagtgcatcaaggagatcagactccggctggtcgtcgcg 193 ||||| || || ||||||||||||||||| || || || | ||| || ||||||| || Sbjct: 949 gaagctgttgatcttgttgacaagtgcattaaagaaattcggctcaggttggtcgttgct 1008 Query: 194 cctcagaatttcgccatcaagattgtggacaaggatggcgccagggactatgctaggcgt 253 ||||| || ||| ||||||||||| || || || || || ||||| ||||| |||||| Sbjct: 1009 cctcaaaacttcataatcaagattgttgataaagagggtgctagggagtatgccaggcgt 1068 Query: 254 g 254 | Sbjct: 1069 g 1069
>dbj|AK099128.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023041C17, full insert sequence Length = 926 Score = 105 bits (53), Expect = 1e-19 Identities = 195/241 (80%), Gaps = 1/241 (0%) Strand = Plus / Plus Query: 14 tgtactacattgactacatcgcgacactccacaagnatcgacaagggagcatttgggtac 73 |||| ||||||||||||||||| ||| |||| ||| ||||| ||||| || |||||||| Sbjct: 433 tgtattacattgactacatcgcaacattccataag-atcgaaaagggtgcctttgggtat 491 Query: 74 gggtcgtacttctgtttgtcgctgatggacaagttgtaccaccctgacatgactgtcgag 133 || || ||||||||| | ||||||||||||||||| || | || |||||| | |||||| Sbjct: 492 ggctcctacttctgtctctcgctgatggacaagttatatcgtccagacatgtcagtcgag 551 Query: 134 gaagcggtagaccttgttgacaagtgcatcaaggagatcagactccggctggtcgtcgcg 193 ||||| || || ||||||||||||||||| || || || | ||| || ||||||| || Sbjct: 552 gaagctgttgatcttgttgacaagtgcattaaagaaattcggctcaggttggtcgttgct 611 Query: 194 cctcagaatttcgccatcaagattgtggacaaggatggcgccagggactatgctaggcgt 253 ||||| || ||| ||||||||||| || || || || || ||||| ||||| |||||| Sbjct: 612 cctcaaaacttcataatcaagattgttgataaagagggtgctagggagtatgccaggcgt 671 Query: 254 g 254 | Sbjct: 672 g 672
>dbj|AK061228.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-211-A02, full insert sequence Length = 968 Score = 105 bits (53), Expect = 1e-19 Identities = 195/241 (80%), Gaps = 1/241 (0%) Strand = Plus / Plus Query: 14 tgtactacattgactacatcgcgacactccacaagnatcgacaagggagcatttgggtac 73 |||| ||||||||||||||||| ||| |||| ||| ||||| ||||| || |||||||| Sbjct: 472 tgtattacattgactacatcgcaacattccataag-atcgaaaagggtgcctttgggtat 530 Query: 74 gggtcgtacttctgtttgtcgctgatggacaagttgtaccaccctgacatgactgtcgag 133 || || ||||||||| | ||||||||||||||||| || | || |||||| | |||||| Sbjct: 531 ggctcctacttctgtctctcgctgatggacaagttatatcgtccagacatgtcagtcgag 590 Query: 134 gaagcggtagaccttgttgacaagtgcatcaaggagatcagactccggctggtcgtcgcg 193 ||||| || || ||||||||||||||||| || || || | ||| || ||||||| || Sbjct: 591 gaagctgttgatcttgttgacaagtgcattaaagaaattcggctcaggttggtcgttgct 650 Query: 194 cctcagaatttcgccatcaagattgtggacaaggatggcgccagggactatgctaggcgt 253 ||||| || ||| ||||||||||| || || || || || ||||| ||||| |||||| Sbjct: 651 cctcaaaacttcataatcaagattgttgataaagagggtgctagggagtatgccaggcgt 710 Query: 254 g 254 | Sbjct: 711 g 711
>dbj|AB026566.1| Oryza sativa (japonica cultivar-group) OsPBD1 mRNA for beta 4 subunit of 20S proteasome, complete cds Length = 882 Score = 105 bits (53), Expect = 1e-19 Identities = 195/241 (80%), Gaps = 1/241 (0%) Strand = Plus / Plus Query: 14 tgtactacattgactacatcgcgacactccacaagnatcgacaagggagcatttgggtac 73 |||| ||||||||||||||||| ||| |||| ||| ||||| ||||| || |||||||| Sbjct: 461 tgtattacattgactacatcgcaacattccataag-atcgaaaagggtgcctttgggtat 519 Query: 74 gggtcgtacttctgtttgtcgctgatggacaagttgtaccaccctgacatgactgtcgag 133 || || ||||||||| | ||||||||||||||||| || | || |||||| | |||||| Sbjct: 520 ggctcctacttctgtctctcgctgatggacaagttatatcgtccagacatgtcagtcgag 579 Query: 134 gaagcggtagaccttgttgacaagtgcatcaaggagatcagactccggctggtcgtcgcg 193 ||||| || || ||||||||||||||||| || || || | ||| || ||||||| || Sbjct: 580 gaagctgttgatcttgttgacaagtgcattaaagaaattcggctcaggttggtcgttgct 639 Query: 194 cctcagaatttcgccatcaagattgtggacaaggatggcgccagggactatgctaggcgt 253 ||||| || ||| ||||||||||| || || || || || ||||| ||||| |||||| Sbjct: 640 cctcaaaacttcataatcaagattgttgataaagagggtgctagggagtatgccaggcgt 699 Query: 254 g 254 | Sbjct: 700 g 700
>ref|NM_117565.2| Arabidopsis thaliana PBD2 (20S PROTEASOME BETA SUBUNIT 2); peptidase/ threonine endopeptidase AT4G14800 (PBD2) mRNA, complete cds Length = 881 Score = 56.0 bits (28), Expect = 1e-04 Identities = 61/71 (85%), Gaps = 1/71 (1%) Strand = Plus / Plus Query: 16 tactacattgactacatcgcgacactccacaagnatcgacaagggagcatttgggtacgg 75 ||||||||||||||||| || || ||||||||| | || |||||||||||||| ||||| Sbjct: 453 tactacattgactacattgcaaccctccacaagg-ttgataagggagcatttggatacgg 511 Query: 76 gtcgtacttct 86 || ||||||| Sbjct: 512 ctcatacttct 522
>emb|Z97337.2|ATFCA2 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 2 Length = 202860 Score = 56.0 bits (28), Expect = 1e-04 Identities = 61/71 (85%), Gaps = 1/71 (1%) Strand = Plus / Plus Query: 16 tactacattgactacatcgcgacactccacaagnatcgacaagggagcatttgggtacgg 75 ||||||||||||||||| || || ||||||||| | || |||||||||||||| ||||| Sbjct: 66867 tactacattgactacattgcaaccctccacaagg-ttgataagggagcatttggatacgg 66925 Query: 76 gtcgtacttct 86 || ||||||| Sbjct: 66926 ctcatacttct 66936
>emb|Y13175.1|ATY13175 Arabidopsis thaliana mRNA for proteasome subunit prcga Length = 829 Score = 56.0 bits (28), Expect = 1e-04 Identities = 61/71 (85%), Gaps = 1/71 (1%) Strand = Plus / Plus Query: 16 tactacattgactacatcgcgacactccacaagnatcgacaagggagcatttgggtacgg 75 ||||||||||||||||| || || ||||||||| | || |||||||||||||| ||||| Sbjct: 362 tactacattgactacattgcaaccctccacaagg-ttgataagggagcatttggatacgg 420 Query: 76 gtcgtacttct 86 || ||||||| Sbjct: 421 ctcatacttct 431
>gb|BT024588.1| Arabidopsis thaliana At4g14800 mRNA, complete cds Length = 600 Score = 56.0 bits (28), Expect = 1e-04 Identities = 61/71 (85%), Gaps = 1/71 (1%) Strand = Plus / Plus Query: 16 tactacattgactacatcgcgacactccacaagnatcgacaagggagcatttgggtacgg 75 ||||||||||||||||| || || ||||||||| | || |||||||||||||| ||||| Sbjct: 343 tactacattgactacattgcaaccctccacaagg-ttgataagggagcatttggatacgg 401 Query: 76 gtcgtacttct 86 || ||||||| Sbjct: 402 ctcatacttct 412
>gb|AY086350.1| Arabidopsis thaliana clone 24266 mRNA, complete sequence Length = 848 Score = 56.0 bits (28), Expect = 1e-04 Identities = 61/71 (85%), Gaps = 1/71 (1%) Strand = Plus / Plus Query: 16 tactacattgactacatcgcgacactccacaagnatcgacaagggagcatttgggtacgg 75 ||||||||||||||||| || || ||||||||| | || |||||||||||||| ||||| Sbjct: 454 tactacattgactacattgcaaccctccacaagg-ttgataagggagcatttggatacgg 512 Query: 76 gtcgtacttct 86 || ||||||| Sbjct: 513 ctcatacttct 523
>gb|AF043535.1|AF043535 Arabidopsis thaliana 20S proteasome beta subunit PBD2 (PBD2) mRNA, complete cds Length = 828 Score = 56.0 bits (28), Expect = 1e-04 Identities = 61/71 (85%), Gaps = 1/71 (1%) Strand = Plus / Plus Query: 16 tactacattgactacatcgcgacactccacaagnatcgacaagggagcatttgggtacgg 75 ||||||||||||||||| || || ||||||||| | || |||||||||||||| ||||| Sbjct: 362 tactacattgactacattgcaaccctccacaagg-ttgataagggagcatttggatacgg 420 Query: 76 gtcgtacttct 86 || ||||||| Sbjct: 421 ctcatacttct 431
>emb|AL161540.2|ATCHRIV40 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 40 Length = 197405 Score = 56.0 bits (28), Expect = 1e-04 Identities = 61/71 (85%), Gaps = 1/71 (1%) Strand = Plus / Plus Query: 16 tactacattgactacatcgcgacactccacaagnatcgacaagggagcatttgggtacgg 75 ||||||||||||||||| || || ||||||||| | || |||||||||||||| ||||| Sbjct: 12321 tactacattgactacattgcaaccctccacaagg-ttgataagggagcatttggatacgg 12379 Query: 76 gtcgtacttct 86 || ||||||| Sbjct: 12380 ctcatacttct 12390
>emb|BX828636.1|CNS0A2J1 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL24ZF09 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 751 Score = 50.1 bits (25), Expect = 0.007 Identities = 52/60 (86%), Gaps = 1/60 (1%) Strand = Plus / Plus Query: 16 tactacattgactacatcgcgacactccacaagnatcgacaagggagcatttgggtacgg 75 ||||||||||||||||| || || ||||||||| | || |||||||||||||| ||||| Sbjct: 367 tactacattgactacattgcaaccctccacaagg-ttgataagggagcatttggatacgg 425
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 275 gcagccgcaaccacagccgcaac 297 ||||||||||||||||||||||| Sbjct: 5863302 gcagccgcaaccacagccgcaac 5863324
>gb|CP000081.1| Leishmania major chromosome 35, complete sequence Length = 2090491 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 274 tgcagccgcaaccacagccgca 295 |||||||||||||||||||||| Sbjct: 1928267 tgcagccgcaaccacagccgca 1928288
>ref|XM_838505.1| Leishmania major strain Friedlin hypothetical protein (LMJ_1424) partial mRNA Length = 3090 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 274 tgcagccgcaaccacagccgca 295 |||||||||||||||||||||| Sbjct: 2165 tgcagccgcaaccacagccgca 2186
>gb|AE014291.4| Brucella suis 1330 chromosome I, complete sequence Length = 2107794 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 132 aggaagcggtagaccttgttg 152 ||||||||||||||||||||| Sbjct: 1694017 aggaagcggtagaccttgttg 1693997
>ref|XM_864952.1| PREDICTED: Bos taurus similar to zinc finger homeodomain 4, transcript variant 3 (LOC539762), mRNA Length = 13873 Score = 42.1 bits (21), Expect = 1.7 Identities = 30/33 (90%) Strand = Plus / Plus Query: 277 agccgcaaccacagccgcaacagtagcaacaac 309 ||||||| ||||||||||||||| | ||||||| Sbjct: 5684 agccgcagccacagccgcaacagcaacaacaac 5716
>ref|XM_874567.1| PREDICTED: Bos taurus similar to zinc finger homeodomain 4, transcript variant 5 (LOC539762), mRNA Length = 13876 Score = 42.1 bits (21), Expect = 1.7 Identities = 30/33 (90%) Strand = Plus / Plus Query: 277 agccgcaaccacagccgcaacagtagcaacaac 309 ||||||| ||||||||||||||| | ||||||| Sbjct: 5686 agccgcagccacagccgcaacagcaacaacaac 5718
>ref|XM_589234.2| PREDICTED: Bos taurus similar to zinc finger homeodomain 4, transcript variant 2 (LOC539762), mRNA Length = 13204 Score = 42.1 bits (21), Expect = 1.7 Identities = 30/33 (90%) Strand = Plus / Plus Query: 277 agccgcaaccacagccgcaacagtagcaacaac 309 ||||||| ||||||||||||||| | ||||||| Sbjct: 5855 agccgcagccacagccgcaacagcaacaacaac 5887
>gb|AE009471.1| Brucella melitensis 16M chromosome I, section 28 of 195 of the complete sequence Length = 10783 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 132 aggaagcggtagaccttgttg 152 ||||||||||||||||||||| Sbjct: 1098 aggaagcggtagaccttgttg 1118
>gb|AE017223.1| Brucella abortus biovar 1 str. 9-941 chromosome I, complete sequence Length = 2124241 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 132 aggaagcggtagaccttgttg 152 ||||||||||||||||||||| Sbjct: 1710939 aggaagcggtagaccttgttg 1710919
>gb|DQ298019.1| Klebsiella pneumoniae plasmid pIGMS32, complete sequence Length = 9294 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 126 ctgtcgaggaagcggtagacc 146 ||||||||||||||||||||| Sbjct: 2517 ctgtcgaggaagcggtagacc 2537
>emb|AM040264.1| Brucella melitensis biovar Abortus chromosome I, complete sequence, strain 2308 Length = 2121359 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 132 aggaagcggtagaccttgttg 152 ||||||||||||||||||||| Sbjct: 1708096 aggaagcggtagaccttgttg 1708076
>ref|NM_113162.2| Arabidopsis thaliana PBD1 (PROTEASOME SUBUNIT PRGB); peptidase/ threonine endopeptidase AT3G22630 (PBD1) mRNA, complete cds Length = 854 Score = 40.1 bits (20), Expect = 6.7 Identities = 32/36 (88%) Strand = Plus / Plus Query: 51 tcgacaagggagcatttgggtacgggtcgtacttct 86 ||||||||||||| ||||| ||||| || ||||||| Sbjct: 447 tcgacaagggagcttttggttacggctcctacttct 482
>ref|NM_113160.2| Arabidopsis thaliana lipid binding AT3G22620 mRNA, complete cds Length = 1295 Score = 40.1 bits (20), Expect = 6.7 Identities = 32/36 (88%) Strand = Plus / Minus Query: 51 tcgacaagggagcatttgggtacgggtcgtacttct 86 ||||||||||||| ||||| ||||| || ||||||| Sbjct: 1225 tcgacaagggagcttttggttacggctcctacttct 1190
>ref|XM_481050.1| Oryza sativa (japonica cultivar-group), mRNA Length = 756 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 154 caagtgcatcaaggagatca 173 |||||||||||||||||||| Sbjct: 417 caagtgcatcaaggagatca 436
>ref|XM_478167.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3174 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 gcatcaaggagatcagactc 178 |||||||||||||||||||| Sbjct: 932 gcatcaaggagatcagactc 951
>gb|AE017354.1| Legionella pneumophila subsp. pneumophila str. Philadelphia 1, complete genome Length = 3397754 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 442 cccaggcgtggactagtctg 461 |||||||||||||||||||| Sbjct: 2732370 cccaggcgtggactagtctg 2732351
>gb|AC012164.12| Drosophila melanogaster clone BACR14D22, complete sequence Length = 169385 Score = 40.1 bits (20), Expect = 6.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 275 gcagccgcaaccacagccgcaacagtagcaac 306 ||||| ||||| ||||||||||||| |||||| Sbjct: 41207 gcagcagcaacaacagccgcaacaggagcaac 41176
>ref|XM_754679.1| Ustilago maydis 521 hypothetical protein (UM03625.1) partial mRNA Length = 1368 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 280 cgcaaccacagccgcaacag 299 |||||||||||||||||||| Sbjct: 254 cgcaaccacagccgcaacag 273
>gb|AY143817.1| Arabidopsis thaliana At3g22630/F16J14_20 mRNA, complete cds Length = 615 Score = 40.1 bits (20), Expect = 6.7 Identities = 32/36 (88%) Strand = Plus / Plus Query: 51 tcgacaagggagcatttgggtacgggtcgtacttct 86 ||||||||||||| ||||| ||||| || ||||||| Sbjct: 377 tcgacaagggagcttttggttacggctcctacttct 412
>emb|Y13692.1|ATY13692 Arabidopsis thaliana mRNA for proteasome subunit prgb Length = 753 Score = 40.1 bits (20), Expect = 6.7 Identities = 32/36 (88%) Strand = Plus / Plus Query: 51 tcgacaagggagcatttgggtacgggtcgtacttct 86 ||||||||||||| ||||| ||||| || ||||||| Sbjct: 400 tcgacaagggagcttttggttacggctcctacttct 435
>dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete genome Length = 2696255 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 323 cggccctgtcggtggtcatt 342 |||||||||||||||||||| Sbjct: 1544330 cggccctgtcggtggtcatt 1544311
>ref|NM_080122.2| Drosophila melanogaster Protein kinase-like 17E CG7001-RA (Pk17E), mRNA Length = 2254 Score = 40.1 bits (20), Expect = 6.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 275 gcagccgcaaccacagccgcaacagtagcaac 306 ||||| ||||| ||||||||||||| |||||| Sbjct: 498 gcagcagcaacaacagccgcaacaggagcaac 529
>gb|AY052249.1| Arabidopsis thaliana AT3g22630/F16J14_20 mRNA, complete cds Length = 836 Score = 40.1 bits (20), Expect = 6.7 Identities = 32/36 (88%) Strand = Plus / Plus Query: 51 tcgacaagggagcatttgggtacgggtcgtacttct 86 ||||||||||||| ||||| ||||| || ||||||| Sbjct: 429 tcgacaagggagcttttggttacggctcctacttct 464
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 154 caagtgcatcaaggagatca 173 |||||||||||||||||||| Sbjct: 9478434 caagtgcatcaaggagatca 9478453
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 159 gcatcaaggagatcagactc 178 |||||||||||||||||||| Sbjct: 18155525 gcatcaaggagatcagactc 18155506
>emb|BX826068.1|CNS0A687 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL83ZA02 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 743 Score = 40.1 bits (20), Expect = 6.7 Identities = 32/36 (88%) Strand = Plus / Plus Query: 51 tcgacaagggagcatttgggtacgggtcgtacttct 86 ||||||||||||| ||||| ||||| || ||||||| Sbjct: 378 tcgacaagggagcttttggttacggctcctacttct 413
>gb|AY069491.1| Drosophila melanogaster LD21956 full insert cDNA Length = 2054 Score = 40.1 bits (20), Expect = 6.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 275 gcagccgcaaccacagccgcaacagtagcaac 306 ||||| ||||| ||||||||||||| |||||| Sbjct: 394 gcagcagcaacaacagccgcaacaggagcaac 425
>dbj|AP005190.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0477A12 Length = 138141 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 159 gcatcaaggagatcagactc 178 |||||||||||||||||||| Sbjct: 90831 gcatcaaggagatcagactc 90812
>gb|AC157093.4| Mus musculus 6 BAC RP24-338D12 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 185068 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 287 acagccgcaacagtagcaacaact 310 ||||| |||||||||||||||||| Sbjct: 48864 acagcagcaacagtagcaacaact 48887
>dbj|AP000731.1| Arabidopsis thaliana genomic DNA, chromosome 3, BAC clone:F16J14 Length = 47827 Score = 40.1 bits (20), Expect = 6.7 Identities = 32/36 (88%) Strand = Plus / Minus Query: 51 tcgacaagggagcatttgggtacgggtcgtacttct 86 ||||||||||||| ||||| ||||| || ||||||| Sbjct: 46988 tcgacaagggagcttttggttacggctcctacttct 46953
>dbj|AP005157.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0005L24 Length = 155365 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 154 caagtgcatcaaggagatca 173 |||||||||||||||||||| Sbjct: 8464 caagtgcatcaaggagatca 8483
>dbj|AK070976.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023073E17, full insert sequence Length = 3174 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 gcatcaaggagatcagactc 178 |||||||||||||||||||| Sbjct: 932 gcatcaaggagatcagactc 951
>gb|AE003510.5| Drosophila melanogaster chromosome X, section 62 of 74 of the complete sequence Length = 297236 Score = 40.1 bits (20), Expect = 6.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 275 gcagccgcaaccacagccgcaacagtagcaac 306 ||||| ||||| ||||||||||||| |||||| Sbjct: 30964 gcagcagcaacaacagccgcaacaggagcaac 30995
>gb|AF043534.1|AF043534 Arabidopsis thaliana 20S proteasome beta subunit PBD1 (PBD1) mRNA, complete cds Length = 839 Score = 40.1 bits (20), Expect = 6.7 Identities = 32/36 (88%) Strand = Plus / Plus Query: 51 tcgacaagggagcatttgggtacgggtcgtacttct 86 ||||||||||||| ||||| ||||| || ||||||| Sbjct: 447 tcgacaagggagcttttggttacggctcctacttct 482
>gb|AF499741.1| Oryza sativa CaM-binding transcription factor (CBT) mRNA, complete cds Length = 3134 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 gcatcaaggagatcagactc 178 |||||||||||||||||||| Sbjct: 908 gcatcaaggagatcagactc 927
>gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome Length = 2695903 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 323 cggccctgtcggtggtcatt 342 |||||||||||||||||||| Sbjct: 76553 cggccctgtcggtggtcatt 76572 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,127,000 Number of Sequences: 3902068 Number of extensions: 3127000 Number of successful extensions: 48630 Number of sequences better than 10.0: 58 Number of HSP's better than 10.0 without gapping: 58 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 48348 Number of HSP's gapped (non-prelim): 262 length of query: 494 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 472 effective length of database: 17,147,199,772 effective search space: 8093478292384 effective search space used: 8093478292384 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
