ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal14d20 |
|---|---|
| Clone Library Name | barley_pub |
>gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mRNA, complete cds Length = 1709 Score = 831 bits (419), Expect = 0.0 Identities = 435/439 (99%), Gaps = 1/439 (0%) Strand = Plus / Plus Query: 1 gcgcatccaccgttgctagcaaggtcgaccaagcagcacagagatggctgctgccttctc 60 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 100 gcgcatccaccgttg-tagcaaggtcgaccaagcagcacagagatggctgctgccttctc 158 Query: 61 ctccaccgtcggggctccggcttctacgccgaccaacttcctcgggaagaagctcaagaa 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 159 ctccaccgtcggggctccggcttctacgccgaccaacttcctcgggaagaagctcaagaa 218 Query: 121 gcaggtgacctcggccgtgaactaccatggcaagagctccaaggccaacaggttcacagt 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 219 gcaggtgacctcggccgtgaactaccatggcaagagctccaaggccaacaggttcacagt 278 Query: 181 catggcagcggagaacatcgacgagaagaggaacaccgacaagtggaagggtcttgcgta 240 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 279 catggcagcggagaacatcgacgagaagaggaacaccgacaagtggaagggtcttgctac 338 Query: 241 cgatatctccgacgaccagcaggacatcaccagagggaagggcatcgtggactcgctctt 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 339 cgatatctccgacgaccagcaggacatcaccagagggaagggcatcgtggactcgctctt 398 Query: 301 ccaggcgcccacgggcgacggcacccacgaggccgtcctcagctcctacgagtacgtcag 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 399 ccaggcgcccacgggcgacggcacccacgaggccgtcctcagctcctacgagtacgtcag 458 Query: 361 ccagggcctgcggaagtacgacttcgacaacaccatgggaggcttctacatcgctcctgc 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 459 ccagggcctgcggaagtacgacttcgacaacaccatgggaggcttctacatcgctcctgc 518 Query: 421 tttcatggacaagcttgtt 439 ||||||||||||||||||| Sbjct: 519 tttcatggacaagcttgtt 537
>gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA Length = 1643 Score = 767 bits (387), Expect = 0.0 Identities = 426/439 (97%) Strand = Plus / Plus Query: 1 gcgcatccaccgttgctagcaaggtcgaccaagcagcacagagatggctgctgccttctc 60 |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 19 gcgcatccaccgctgctagcaaggtcgagcaagcagcacagagatggctgctgccttctc 78 Query: 61 ctccaccgtcggggctccggcttctacgccgaccaacttcctcgggaagaagctcaagaa 120 |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 79 ctccaccgtcggtgccccggcttctacgccgaccaacttcctcgggaagaagctcaagaa 138 Query: 121 gcaggtgacctcggccgtgaactaccatggcaagagctccaaggccaacaggttcacagt 180 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 139 gcaggtgacctcggccgtgaactaccatggcaagagctccaaggccaacaggttcacggt 198 Query: 181 catggcagcggagaacatcgacgagaagaggaacaccgacaagtggaagggtcttgcgta 240 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 199 catggcagcggaaaacatcgacgagaagaggaacaccgacaagtggaagggtcttgcgta 258 Query: 241 cgatatctccgacgaccagcaggacatcaccagagggaagggcatcgtggactcgctctt 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 259 cgatatctccgacgaccagcaggacatcaccagagggaagggcatcgtggactccctctt 318 Query: 301 ccaggcgcccacgggcgacggcacccacgaggccgtcctcagctcctacgagtacgtcag 360 |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 319 ccaggcgcccactggcgacggcacccacgaggccgtcctcagctcatacgagtacgtcag 378 Query: 361 ccagggcctgcggaagtacgacttcgacaacaccatgggaggcttctacatcgctcctgc 420 |||||| || |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 379 ccagggactcaagaagtacgacttcgacaacaccatgggaggcttctacatcgctcctgc 438 Query: 421 tttcatggacaagcttgtt 439 ||||||||||||||||||| Sbjct: 439 tttcatggacaagcttgtt 457
>gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5-bisphosphate carboxylase activase (RcaB) gene, complete cds; and ribulose 1,5-bisphosphate carboxylase activase (RcaA) gene, alternatively spliced, complete cds Length = 8766 Score = 700 bits (353), Expect = 0.0 Identities = 359/361 (99%) Strand = Plus / Plus Query: 79 ggcttctacgccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgt 138 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5518 ggcttctacgccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgt 5577 Query: 139 gaactaccatggcaagagctccaaggccaacaggttcacagtcatggcagcggagaacat 198 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5578 gaactaccatggcaagagctccaaggccaacaggttcacagtcatggcagcggagaacat 5637 Query: 199 cgacgagaagaggaacaccgacaagtggaagggtcttgcgtacgatatctccgacgacca 258 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5638 cgacgagaagaggaacaccgacaagtggaagggtcttgcgtacgatatctccgacgacca 5697 Query: 259 gcaggacatcaccagagggaagggcatcgtggactcgctcttccaggcgcccacgggcga 318 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 5698 gcaggacatcaccagagggaagggcatcgtggactcgctcttccaggcgcccacggggca 5757 Query: 319 cggcacccacgaggccgtcctcagctcctacgagtacgtcagccagggcctgcggaagta 378 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5758 cggcacccacgaggccgtcctcagctcctacgagtacgtcagccagggcctgcggaagta 5817 Query: 379 cgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagcttgt 438 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5818 cgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagcttgt 5877 Query: 439 t 439 | Sbjct: 5878 t 5878 Score = 240 bits (121), Expect = 3e-60 Identities = 190/213 (89%) Strand = Plus / Plus Query: 223 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 282 |||||||||||| || ||||| ||||| |||||||||||||||||||| | ||||| || Sbjct: 2939 gtggaagggtctggcctacgacatctcggacgaccagcaggacatcactcgggggaaagg 2998 Query: 283 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcag 342 |||||||||||| || |||||||| |||| |||||||||||||||||||||| |||| || Sbjct: 2999 catcgtggactccctgttccaggcccccatgggcgacggcacccacgaggccatcctaag 3058 Query: 343 ctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggagg 402 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || Sbjct: 3059 ctcctacgagtacatcagccagggcctgcggaagtacgacttcgacaacaccatggacgg 3118 Query: 403 cttctacatcgctcctgctttcatggacaagct 435 | |||||||| || || |||||||||||||| Sbjct: 3119 gctgtacatcgcgccggcattcatggacaagct 3151 Score = 143 bits (72), Expect = 5e-31 Identities = 79/80 (98%), Gaps = 1/80 (1%) Strand = Plus / Plus Query: 1 gcgcatccaccgttgctagcaaggtcgaccaagcagcacagagatggctgctgccttctc 60 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5320 gcgcatccaccgttg-tagcaaggtcgaccaagcagcacagagatggctgctgccttctc 5378 Query: 61 ctccaccgtcggggctccgg 80 |||||||||||||||||||| Sbjct: 5379 ctccaccgtcggggctccgg 5398
>gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mRNA, 3' end Length = 1394 Score = 535 bits (270), Expect = e-149 Identities = 279/282 (98%) Strand = Plus / Plus Query: 158 tccaaggccaacaggttcacagtcatggcagcggagaacatcgacgagaagaggaacacc 217 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 tccaaggccaacaggttcacagtcatggcagcggagaacatcgacgagaagaggaacacc 60 Query: 218 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 277 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 61 gacaagtggaagggtcttgctaccgatatctccgacgaccagcaggacatcaccagaggg 120 Query: 278 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 337 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 180 Query: 338 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 397 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 240 Query: 398 ggaggcttctacatcgctcctgctttcatggacaagcttgtt 439 |||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 ggaggcttctacatcgctcctgctttcatggacaagcttgtt 282
>gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha form precursor (RCA1) mRNA, complete cds; nuclear gene for chloroplast product Length = 1616 Score = 305 bits (154), Expect = 6e-80 Identities = 202/218 (92%) Strand = Plus / Plus Query: 218 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 277 |||||||||||||| || || ||||||||||||||||||||||||||||||||||| || Sbjct: 257 gacaagtggaagggcctcgcctacgatatctccgacgaccagcaggacatcaccaggggt 316 Query: 278 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 337 ||||| ||||| ||||| || ||||||||||||| |||||| |||||||||||||||||| Sbjct: 317 aagggtatcgtcgactccctgttccaggcgcccatgggcgatggcacccacgaggccgtc 376 Query: 338 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 397 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 377 ctcagctcctacgagtacgtcagccagggcctcaagaagtacgacttcgacaacaccatg 436 Query: 398 ggaggcttctacatcgctcctgctttcatggacaagct 435 ||||||||||||||||| || ||||||||||||||||| Sbjct: 437 ggaggcttctacatcgccccggctttcatggacaagct 474 Score = 228 bits (115), Expect = 1e-56 Identities = 139/147 (94%) Strand = Plus / Plus Query: 40 agagatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaactt 99 ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| ||| Sbjct: 76 agagatggctgctgccttctcctccaccgtcggagctccggcttccacgccgaccagctt 135 Query: 100 cctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctc 159 |||||| || |||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 136 cctcggcaacaagctcaagaagcaggtgacctcggcagtgaactaccatggcaagagctt 195 Query: 160 caaggccaacaggttcacagtcatggc 186 |||||||||||||||||| |||||||| Sbjct: 196 caaggccaacaggttcaccgtcatggc 222
>gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form precursor (RCA2) mRNA, complete cds; nuclear gene for chloroplast product Length = 1646 Score = 285 bits (144), Expect = 6e-74 Identities = 199/218 (91%) Strand = Plus / Plus Query: 218 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 277 |||||||||||||| || || ||||||||||||||||||||||||||||||||||| || Sbjct: 247 gacaagtggaagggcctcgcctacgatatctccgacgaccagcaggacatcaccaggggt 306 Query: 278 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 337 ||||| ||||| ||||| | ||||||||||||| |||||| || ||||||||||||||| Sbjct: 307 aagggtatcgtcgactccttgttccaggcgcccatgggcgatggnacccacgaggccgtc 366 Query: 338 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 397 |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 367 ctcagctcntacgagtacgtcagccagggcctcaagaagtacgacttcgacaacaccatg 426 Query: 398 ggaggcttctacatcgctcctgctttcatggacaagct 435 ||||||||||||||||| || ||||||||||||||||| Sbjct: 427 ggaggcttctacatcgccccggctttcatggacaagct 464 Score = 222 bits (112), Expect = 7e-55 Identities = 138/147 (93%) Strand = Plus / Plus Query: 40 agagatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaactt 99 ||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||| ||| Sbjct: 66 agagatggctgctgccttctcctccaccgtcggagctccggcttccacgccnaccagctt 125 Query: 100 cctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctc 159 |||||| || |||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 126 cctcggcaacaagctcaagaagcaggtgacctcggcagtgaactaccatggcaagagctt 185 Query: 160 caaggccaacaggttcacagtcatggc 186 |||||||||||||||||| |||||||| Sbjct: 186 caaggccaacaggttcaccgtcatggc 212
>dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ribulose-bisphosphate carboxylase activase large isoform precursor protein, complete cds, clone: 13YPR038 Length = 1558 Score = 266 bits (134), Expect = 6e-68 Identities = 197/218 (90%) Strand = Plus / Plus Query: 218 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 277 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 204 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 263 Query: 278 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 337 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 264 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 323 Query: 338 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 397 |||||||||||||||||| |||||||||| || | | |||||||||||||||||||||| Sbjct: 324 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 383 Query: 398 ggaggcttctacatcgctcctgctttcatggacaagct 435 ||||||||||||||||| |||||||||||||||||||| Sbjct: 384 ggaggcttctacatcgcccctgctttcatggacaagct 421 Score = 172 bits (87), Expect = 6e-40 Identities = 123/135 (91%) Strand = Plus / Plus Query: 42 agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 101 |||||||||||||||||||||||||||| || |||||||| || || ||||||||||||| Sbjct: 25 agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 84 Query: 102 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 161 | ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct: 85 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 144 Query: 162 aggccaacaggttca 176 | ||||||||||| Sbjct: 145 acatcaacaggttca 159
>dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F01, full insert sequence Length = 1721 Score = 266 bits (134), Expect = 6e-68 Identities = 197/218 (90%) Strand = Plus / Plus Query: 218 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 277 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 252 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 311 Query: 278 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 337 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 312 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 371 Query: 338 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 397 |||||||||||||||||| |||||||||| || | | |||||||||||||||||||||| Sbjct: 372 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 431 Query: 398 ggaggcttctacatcgctcctgctttcatggacaagct 435 ||||||||||||||||| |||||||||||||||||||| Sbjct: 432 ggaggcttctacatcgcccctgctttcatggacaagct 469 Score = 172 bits (87), Expect = 6e-40 Identities = 123/135 (91%) Strand = Plus / Plus Query: 42 agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 101 |||||||||||||||||||||||||||| || |||||||| || || ||||||||||||| Sbjct: 73 agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 132 Query: 102 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 161 | ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct: 133 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 192 Query: 162 aggccaacaggttca 176 | ||||||||||| Sbjct: 193 acatcaacaggttca 207
>dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C24, full insert sequence Length = 1680 Score = 266 bits (134), Expect = 6e-68 Identities = 197/218 (90%) Strand = Plus / Plus Query: 218 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 277 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 241 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 300 Query: 278 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 337 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 301 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 360 Query: 338 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 397 |||||||||||||||||| |||||||||| || | | |||||||||||||||||||||| Sbjct: 361 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 420 Query: 398 ggaggcttctacatcgctcctgctttcatggacaagct 435 ||||||||||||||||| |||||||||||||||||||| Sbjct: 421 ggaggcttctacatcgcccctgctttcatggacaagct 458 Score = 172 bits (87), Expect = 6e-40 Identities = 123/135 (91%) Strand = Plus / Plus Query: 42 agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 101 |||||||||||||||||||||||||||| || |||||||| || || ||||||||||||| Sbjct: 62 agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 121 Query: 102 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 161 | ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct: 122 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 181 Query: 162 aggccaacaggttca 176 | ||||||||||| Sbjct: 182 acatcaacaggttca 196
>dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E04, full insert sequence Length = 1691 Score = 266 bits (134), Expect = 6e-68 Identities = 197/218 (90%) Strand = Plus / Plus Query: 218 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 277 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 240 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 299 Query: 278 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 337 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 300 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 359 Query: 338 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 397 |||||||||||||||||| |||||||||| || | | |||||||||||||||||||||| Sbjct: 360 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 419 Query: 398 ggaggcttctacatcgctcctgctttcatggacaagct 435 ||||||||||||||||| |||||||||||||||||||| Sbjct: 420 ggaggcttctacatcgcccctgctttcatggacaagct 457 Score = 172 bits (87), Expect = 6e-40 Identities = 123/135 (91%) Strand = Plus / Plus Query: 42 agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 101 |||||||||||||||||||||||||||| || |||||||| || || ||||||||||||| Sbjct: 61 agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 120 Query: 102 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 161 | ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct: 121 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 180 Query: 162 aggccaacaggttca 176 | ||||||||||| Sbjct: 181 acatcaacaggttca 195
>dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D05, full insert sequence Length = 1470 Score = 266 bits (134), Expect = 6e-68 Identities = 197/218 (90%) Strand = Plus / Plus Query: 218 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 277 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 24 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 83 Query: 278 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 337 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 84 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 143 Query: 338 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 397 |||||||||||||||||| |||||||||| || | | |||||||||||||||||||||| Sbjct: 144 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 203 Query: 398 ggaggcttctacatcgctcctgctttcatggacaagct 435 ||||||||||||||||| |||||||||||||||||||| Sbjct: 204 ggaggcttctacatcgcccctgctttcatggacaagct 241
>dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase small isoform precursor, complete cds Length = 1706 Score = 266 bits (134), Expect = 6e-68 Identities = 197/218 (90%) Strand = Plus / Plus Query: 218 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 277 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 245 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 304 Query: 278 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 337 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 305 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 364 Query: 338 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 397 |||||||||||||||||| |||||||||| || | | |||||||||||||||||||||| Sbjct: 365 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 424 Query: 398 ggaggcttctacatcgctcctgctttcatggacaagct 435 ||||||||||||||||| |||||||||||||||||||| Sbjct: 425 ggaggcttctacatcgcccctgctttcatggacaagct 462 Score = 165 bits (83), Expect = 1e-37 Identities = 122/135 (90%) Strand = Plus / Plus Query: 42 agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 101 |||||||||||||||||||||||||||| || |||||||| || || ||||||||||||| Sbjct: 66 agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 125 Query: 102 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 161 | ||||||||||| || ||||||||||| ||||| ||||||||||||||||||||||||| Sbjct: 126 tggggaagaagctgaaaaagcaggtgacatcggcggtgaactaccatggcaagagctcca 185 Query: 162 aggccaacaggttca 176 | ||||||||||| Sbjct: 186 acatcaacaggttca 200
>dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform precursor, complete cds Length = 1623 Score = 266 bits (134), Expect = 6e-68 Identities = 197/218 (90%) Strand = Plus / Plus Query: 218 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 277 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 239 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 298 Query: 278 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 337 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 299 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 358 Query: 338 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 397 |||||||||||||||||| |||||||||| || | | |||||||||||||||||||||| Sbjct: 359 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 418 Query: 398 ggaggcttctacatcgctcctgctttcatggacaagct 435 ||||||||||||||||| |||||||||||||||||||| Sbjct: 419 ggaggcttctacatcgcccctgctttcatggacaagct 456 Score = 172 bits (87), Expect = 6e-40 Identities = 123/135 (91%) Strand = Plus / Plus Query: 42 agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 101 |||||||||||||||||||||||||||| || |||||||| || || ||||||||||||| Sbjct: 60 agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 119 Query: 102 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 161 | ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct: 120 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 179 Query: 162 aggccaacaggttca 176 | ||||||||||| Sbjct: 180 acatcaacaggttca 194
>gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carboxylase/oxygenase activase (rca) mRNA, complete cds Length = 1675 Score = 258 bits (130), Expect = 1e-65 Identities = 196/218 (89%) Strand = Plus / Plus Query: 218 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 277 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 212 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 271 Query: 278 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 337 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 272 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 331 Query: 338 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 397 |||||||||||||||||| |||||||||| || | | |||||||||||||||||||||| Sbjct: 332 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 391 Query: 398 ggaggcttctacatcgctcctgctttcatggacaagct 435 ||||||||||||||||| ||| |||||||||||||||| Sbjct: 392 ggaggcttctacatcgccccttctttcatggacaagct 429 Score = 172 bits (87), Expect = 6e-40 Identities = 123/135 (91%) Strand = Plus / Plus Query: 42 agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 101 |||||||||||||||||||||||||||| || |||||||| || || ||||||||||||| Sbjct: 33 agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 92 Query: 102 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 161 | ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct: 93 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 152 Query: 162 aggccaacaggttca 176 | ||||||||||| Sbjct: 153 acatcaacaggttca 167
>gb|AF251264.1|AF251264 Triticum aestivum ribulose bisphosphate carboxylase activase B (RcaB) mRNA, complete cds; nuclear gene for chloroplast product Length = 1525 Score = 240 bits (121), Expect = 3e-60 Identities = 190/213 (89%) Strand = Plus / Plus Query: 223 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 282 |||||||||||| || ||||| |||||||| ||||||||||||||||| || ||||| || Sbjct: 217 gtggaagggtctcgcttacgacatctccgatgaccagcaggacatcacgagggggaaagg 276 Query: 283 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcag 342 |||||||||||| || |||||||| |||| |||||||||||||||||||||| |||| || Sbjct: 277 catcgtggactccctgttccaggcccccatgggcgacggcacccacgaggccatcctgag 336 Query: 343 ctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggagg 402 ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| || Sbjct: 337 ctcctacgagtacatcagccagggcctgcgcaagtacgacttcgacaacaccatggacgg 396 Query: 403 cttctacatcgctcctgctttcatggacaagct 435 | |||||||| || || |||||||||||||| Sbjct: 397 gctgtacatcgccccggcgttcatggacaagct 429 Score = 77.8 bits (39), Expect = 3e-11 Identities = 72/83 (86%) Strand = Plus / Plus Query: 43 gatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcct 102 ||||||| |||| ||||| |||||||| || |||||||| || || ||||||| |||||| Sbjct: 25 gatggcttctgctttctcgtccaccgttggagctccggcgtcgaccccgaccaccttcct 84 Query: 103 cgggaagaagctcaagaagcagg 125 |||||||||| | |||||||||| Sbjct: 85 cgggaagaaggtgaagaagcagg 107
>gb|M55448.1|BLYRCAB Hordeum vulgare rubisco activase (RcaB) mRNA, complete cds Length = 1656 Score = 240 bits (121), Expect = 3e-60 Identities = 190/213 (89%) Strand = Plus / Plus Query: 223 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 282 |||||||||||| || ||||| ||||| |||||||||||||||||||| | ||||| || Sbjct: 370 gtggaagggtctggcctacgacatctcggacgaccagcaggacatcactcgggggaaagg 429 Query: 283 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcag 342 |||||||||||| || |||||||| |||| |||||||||||||||||||||| |||| || Sbjct: 430 catcgtggactccctgttccaggcccccatgggcgacggcacccacgaggccatcctaag 489 Query: 343 ctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggagg 402 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || Sbjct: 490 ctcctacgagtacatcagccagggcctgcggaagtacgacttcgacaacaccatggacgg 549 Query: 403 cttctacatcgctcctgctttcatggacaagct 435 | |||||||| || || |||||||||||||| Sbjct: 550 gctgtacatcgcgccggcattcatggacaagct 582
>gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0003C04 map S10003, complete sequence Length = 119238 Score = 176 bits (89), Expect = 4e-41 Identities = 134/149 (89%) Strand = Plus / Minus Query: 218 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 277 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 109706 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 109647 Query: 278 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 337 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 109646 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 109587 Query: 338 ctcagctcctacgagtacgtcagccaggg 366 |||||||||||||||||| |||||||||| Sbjct: 109586 ctcagctcctacgagtacctcagccaggg 109558 Score = 125 bits (63), Expect = 1e-25 Identities = 99/111 (89%) Strand = Plus / Minus Query: 223 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 282 ||||||||| || |||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct: 113205 gtggaagggactcgcgtacgacatctccgacgaccagcaggacatcaccagggggaaggg 113146 Query: 283 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggc 333 | |||| ||||| || |||||||| |||| ||| || |||||||||||||| Sbjct: 113145 cctcgtcgactccctgttccaggctcccatgggtgatggcacccacgaggc 113095 Score = 119 bits (60), Expect = 8e-24 Identities = 81/88 (92%) Strand = Plus / Minus Query: 89 ccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccat 148 |||||||||||||| ||||||||||| |||||||||||||| ||||| |||||||||||| Sbjct: 109838 ccgaccaacttcctggggaagaagctgaagaagcaggtgacatcggcggtgaactaccat 109779 Query: 149 ggcaagagctccaaggccaacaggttca 176 |||||||||||||| ||||||||||| Sbjct: 109778 ggcaagagctccaacatcaacaggttca 109751 Score = 111 bits (56), Expect = 2e-21 Identities = 59/60 (98%) Strand = Plus / Minus Query: 376 gtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagct 435 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 109435 gtacgacttcgacaacaccatgggaggcttctacatcgcccctgctttcatggacaagct 109376 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Minus Query: 42 agatggctgctgccttctcctccaccgtcggggctccgg 80 |||||||||||||||||||||||||||| || ||||||| Sbjct: 109984 agatggctgctgccttctcctccaccgttggagctccgg 109946
>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0026K20 map S10559, complete sequence Length = 115996 Score = 176 bits (89), Expect = 4e-41 Identities = 134/149 (89%) Strand = Plus / Minus Query: 218 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 277 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 31583 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 31524 Query: 278 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 337 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 31523 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 31464 Query: 338 ctcagctcctacgagtacgtcagccaggg 366 |||||||||||||||||| |||||||||| Sbjct: 31463 ctcagctcctacgagtacctcagccaggg 31435 Score = 125 bits (63), Expect = 1e-25 Identities = 99/111 (89%) Strand = Plus / Minus Query: 223 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 282 ||||||||| || |||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct: 35082 gtggaagggactcgcgtacgacatctccgacgaccagcaggacatcaccagggggaaggg 35023 Query: 283 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggc 333 | |||| ||||| || |||||||| |||| ||| || |||||||||||||| Sbjct: 35022 cctcgtcgactccctgttccaggctcccatgggtgatggcacccacgaggc 34972 Score = 119 bits (60), Expect = 8e-24 Identities = 81/88 (92%) Strand = Plus / Minus Query: 89 ccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccat 148 |||||||||||||| ||||||||||| |||||||||||||| ||||| |||||||||||| Sbjct: 31715 ccgaccaacttcctggggaagaagctgaagaagcaggtgacatcggcggtgaactaccat 31656 Query: 149 ggcaagagctccaaggccaacaggttca 176 |||||||||||||| ||||||||||| Sbjct: 31655 ggcaagagctccaacatcaacaggttca 31628 Score = 111 bits (56), Expect = 2e-21 Identities = 59/60 (98%) Strand = Plus / Minus Query: 376 gtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagct 435 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 31312 gtacgacttcgacaacaccatgggaggcttctacatcgcccctgctttcatggacaagct 31253 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Minus Query: 42 agatggctgctgccttctcctccaccgtcggggctccgg 80 |||||||||||||||||||||||||||| || ||||||| Sbjct: 31861 agatggctgctgccttctcctccaccgttggagctccgg 31823
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 176 bits (89), Expect = 4e-41 Identities = 134/149 (89%) Strand = Plus / Minus Query: 218 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 277 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 28304845 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 28304786 Query: 278 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 337 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 28304785 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 28304726 Query: 338 ctcagctcctacgagtacgtcagccaggg 366 |||||||||||||||||| |||||||||| Sbjct: 28304725 ctcagctcctacgagtacctcagccaggg 28304697 Score = 125 bits (63), Expect = 1e-25 Identities = 99/111 (89%) Strand = Plus / Minus Query: 223 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 282 ||||||||| || |||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct: 28308344 gtggaagggactcgcgtacgacatctccgacgaccagcaggacatcaccagggggaaggg 28308285 Query: 283 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggc 333 | |||| ||||| || |||||||| |||| ||| || |||||||||||||| Sbjct: 28308284 cctcgtcgactccctgttccaggctcccatgggtgatggcacccacgaggc 28308234 Score = 119 bits (60), Expect = 8e-24 Identities = 81/88 (92%) Strand = Plus / Minus Query: 89 ccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccat 148 |||||||||||||| ||||||||||| |||||||||||||| ||||| |||||||||||| Sbjct: 28304977 ccgaccaacttcctggggaagaagctgaagaagcaggtgacatcggcggtgaactaccat 28304918 Query: 149 ggcaagagctccaaggccaacaggttca 176 |||||||||||||| ||||||||||| Sbjct: 28304917 ggcaagagctccaacatcaacaggttca 28304890 Score = 111 bits (56), Expect = 2e-21 Identities = 59/60 (98%) Strand = Plus / Minus Query: 376 gtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagct 435 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 28304574 gtacgacttcgacaacaccatgggaggcttctacatcgcccctgctttcatggacaagct 28304515 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Minus Query: 42 agatggctgctgccttctcctccaccgtcggggctccgg 80 |||||||||||||||||||||||||||| || ||||||| Sbjct: 28305123 agatggctgctgccttctcctccaccgttggagctccgg 28305085
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 176 bits (89), Expect = 4e-41 Identities = 134/149 (89%) Strand = Plus / Minus Query: 218 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 277 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 28287294 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 28287235 Query: 278 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 337 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 28287234 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 28287175 Query: 338 ctcagctcctacgagtacgtcagccaggg 366 |||||||||||||||||| |||||||||| Sbjct: 28287174 ctcagctcctacgagtacctcagccaggg 28287146 Score = 125 bits (63), Expect = 1e-25 Identities = 99/111 (89%) Strand = Plus / Minus Query: 223 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 282 ||||||||| || |||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct: 28290793 gtggaagggactcgcgtacgacatctccgacgaccagcaggacatcaccagggggaaggg 28290734 Query: 283 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggc 333 | |||| ||||| || |||||||| |||| ||| || |||||||||||||| Sbjct: 28290733 cctcgtcgactccctgttccaggctcccatgggtgatggcacccacgaggc 28290683 Score = 119 bits (60), Expect = 8e-24 Identities = 81/88 (92%) Strand = Plus / Minus Query: 89 ccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccat 148 |||||||||||||| ||||||||||| |||||||||||||| ||||| |||||||||||| Sbjct: 28287426 ccgaccaacttcctggggaagaagctgaagaagcaggtgacatcggcggtgaactaccat 28287367 Query: 149 ggcaagagctccaaggccaacaggttca 176 |||||||||||||| ||||||||||| Sbjct: 28287366 ggcaagagctccaacatcaacaggttca 28287339 Score = 111 bits (56), Expect = 2e-21 Identities = 59/60 (98%) Strand = Plus / Minus Query: 376 gtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagct 435 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 28287023 gtacgacttcgacaacaccatgggaggcttctacatcgcccctgctttcatggacaagct 28286964 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Minus Query: 42 agatggctgctgccttctcctccaccgtcggggctccgg 80 |||||||||||||||||||||||||||| || ||||||| Sbjct: 28287572 agatggctgctgccttctcctccaccgttggagctccgg 28287534
>dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F04, full insert sequence Length = 1682 Score = 172 bits (87), Expect = 6e-40 Identities = 123/135 (91%) Strand = Plus / Plus Query: 42 agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 101 |||||||||||||||||||||||||||| || |||||||| || || ||||||||||||| Sbjct: 61 agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 120 Query: 102 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 161 | ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct: 121 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 180 Query: 162 aggccaacaggttca 176 | ||||||||||| Sbjct: 181 acatcaacaggttca 195 Score = 131 bits (66), Expect = 2e-27 Identities = 87/94 (92%) Strand = Plus / Plus Query: 342 gctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggag 401 |||||||||||||| |||||||||| || | | |||||||||||||||||||||||||| Sbjct: 327 gctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatgggag 386 Query: 402 gcttctacatcgctcctgctttcatggacaagct 435 ||||||||||||| |||||||||||||||||||| Sbjct: 387 gcttctacatcgcccctgctttcatggacaagct 420 Score = 89.7 bits (45), Expect = 7e-15 Identities = 78/89 (87%) Strand = Plus / Plus Query: 218 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 277 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 240 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 299 Query: 278 aagggcatcgtggactcgctcttccaggc 306 ||||| |||| ||||| || |||||||| Sbjct: 300 aagggtttcgtcgactcccttttccaggc 328
>gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/oxygenase activase precursor (rca1) mRNA, complete cds Length = 1424 Score = 133 bits (67), Expect = 5e-28 Identities = 130/151 (86%) Strand = Plus / Plus Query: 218 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 277 |||| ||||||||| || || ||||| ||||| ||||||||||||||||||||||| || Sbjct: 213 gacaggtggaagggcctggcctacgacatctcggacgaccagcaggacatcaccaggggc 272 Query: 278 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 337 |||||| |||| ||| |||||||||||||| | ||| ||||||||||||| ||||| Sbjct: 273 aagggcctcgtcgacaacctcttccaggcgcctatgggggacggcacccacgtcgccgtg 332 Query: 338 ctcagctcctacgagtacgtcagccagggcc 368 |||||||||||||| ||| |||||||||||| Sbjct: 333 ctcagctcctacgactacatcagccagggcc 363 Score = 91.7 bits (46), Expect = 2e-15 Identities = 107/127 (84%), Gaps = 9/127 (7%) Strand = Plus / Plus Query: 44 atggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaa------c 97 ||||| || |||||||||||||||||||| |||||||| || || ||||||| | Sbjct: 21 atggcggccgccttctcctccaccgtcggagctccggcctccaccccgaccaggagcagc 80 Query: 98 ttcctcgggaagaagctcaagaagc---aggtgacctcggccgtgaactaccatggcaag 154 |||||||||||||||||||| |||| ||||| || ||||||||| ||||||||||||| Sbjct: 81 ttcctcgggaagaagctcaacaagccgcaggtgtccgcggccgtgacctaccatggcaag 140 Query: 155 agctcca 161 ||||||| Sbjct: 141 agctcca 147
>gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase (rca4) mRNA, partial cds Length = 1674 Score = 113 bits (57), Expect = 5e-22 Identities = 153/185 (82%) Strand = Plus / Plus Query: 254 gaccagcaggacatcaccagagggaagggcatcgtggactcgctcttccaggcgcccacg 313 |||||||||||||||||||| ||||||||||| || ||||| || |||||||| |||| | Sbjct: 235 gaccagcaggacatcaccagggggaagggcatggtcgactccctgttccaggctcccatg 294 Query: 314 ggcgacggcacccacgaggccgtcctcagctcctacgagtacgtcagccagggcctgcgg 373 |||||||| |||||| | ||||||| ||||||||||||||| ||||| || || || Sbjct: 295 ggcgacggaacccacaaccccgtcctgagctcctacgagtacatcagcaccggtctccgc 354 Query: 374 aagtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaag 433 || | |||| ||||||||| || || || ||||||||||| || |||||||||||| Sbjct: 355 tcgttcaacttggacaacaccgtgaatggtttatacatcgctccggccttcatggacaag 414 Query: 434 cttgt 438 ||||| Sbjct: 415 cttgt 419
>gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase (rca3) mRNA, partial cds Length = 1494 Score = 113 bits (57), Expect = 5e-22 Identities = 153/185 (82%) Strand = Plus / Plus Query: 254 gaccagcaggacatcaccagagggaagggcatcgtggactcgctcttccaggcgcccacg 313 |||||||||||||||||||| ||||||||||| || ||||| || |||||||| |||| | Sbjct: 98 gaccagcaggacatcaccagggggaagggcatggtcgactccctgttccaggctcccatg 157 Query: 314 ggcgacggcacccacgaggccgtcctcagctcctacgagtacgtcagccagggcctgcgg 373 |||||||| |||||| | ||||||| ||||||||||||||| ||||| || || || Sbjct: 158 ggcgacggaacccacaaccccgtcctgagctcctacgagtacatcagcaccggtctccgc 217 Query: 374 aagtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaag 433 || | |||| ||||||||| || || || ||||||||||| || |||||||||||| Sbjct: 218 tcgttcaacttggacaacaccgtgaatggtttatacatcgctccggccttcatggacaag 277 Query: 434 cttgt 438 ||||| Sbjct: 278 cttgt 282
>gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase (rca1) mRNA, partial cds Length = 1597 Score = 113 bits (57), Expect = 5e-22 Identities = 153/185 (82%) Strand = Plus / Plus Query: 254 gaccagcaggacatcaccagagggaagggcatcgtggactcgctcttccaggcgcccacg 313 |||||||||||||||||||| ||||||||||| || ||||| || |||||||| |||| | Sbjct: 128 gaccagcaggacatcaccagggggaagggcatggtcgactccctgttccaggctcccatg 187 Query: 314 ggcgacggcacccacgaggccgtcctcagctcctacgagtacgtcagccagggcctgcgg 373 |||||||| |||||| | ||||||| ||||||||||||||| ||||| || || || Sbjct: 188 ggcgacggaacccacaaccccgtcctgagctcctacgagtacatcagcaccggtctccgc 247 Query: 374 aagtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaag 433 || | |||| ||||||||| || || || ||||||||||| || |||||||||||| Sbjct: 248 tcgttcaacttggacaacaccgtgaatggtttatacatcgctccggccttcatggacaag 307 Query: 434 cttgt 438 ||||| Sbjct: 308 cttgt 312
>gb|AY110044.1| Zea mays CL1146_1 mRNA sequence Length = 1750 Score = 111 bits (56), Expect = 2e-21 Identities = 126/151 (83%) Strand = Plus / Plus Query: 218 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 277 |||| ||||||||| || || ||||| ||||| ||||||||||||||||||||||| || Sbjct: 213 gacaggtggaagggcctggcctacgacatctcggacgaccagcaggacatcaccaggggc 272 Query: 278 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 337 |||||| |||| ||| |||||||||||||| | |||||||||||| ||||| Sbjct: 273 aagggcctcgtcgacaacctcttccaggcgcctatnnnnnacggcacccacgtcgccgtg 332 Query: 338 ctcagctcctacgagtacgtcagccagggcc 368 |||||||||||||| ||| |||||||||||| Sbjct: 333 ctcagctcctacgactacatcagccagggcc 363 Score = 91.7 bits (46), Expect = 2e-15 Identities = 107/127 (84%), Gaps = 9/127 (7%) Strand = Plus / Plus Query: 44 atggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaa------c 97 ||||| || |||||||||||||||||||| |||||||| || || ||||||| | Sbjct: 21 atggcggccgccttctcctccaccgtcggagctccggcctccaccccgaccaggagcagc 80 Query: 98 ttcctcgggaagaagctcaagaagc---aggtgacctcggccgtgaactaccatggcaag 154 |||||||||||||||||||| |||| ||||| || ||||||||| ||||||||||||| Sbjct: 81 ttcctcgggaagaagctcaacaagccgcaggtgtccgcggccgtgacctaccatggcaag 140 Query: 155 agctcca 161 ||||||| Sbjct: 141 agctcca 147
>gb|AF329934.1|AF329934 Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase activase 1 mRNA, complete cds Length = 1559 Score = 95.6 bits (48), Expect = 1e-16 Identities = 174/216 (80%) Strand = Plus / Plus Query: 224 tggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaagggc 283 |||||||||||||| || ||||||||||| ||||| || ||||| ||||||||||| || Sbjct: 280 tggaagggtcttgcttatgatatctccgatgaccaacaagacattaccagagggaaaggt 339 Query: 284 atcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcagc 343 || || ||||| | ||||| || |||| | ||| || || ||| | || ||| | ||| Sbjct: 340 atggtcgactcattgttccaagctcccatgaacgatggtactcactatgctgtcatgagc 399 Query: 344 tcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggaggc 403 ||||| |||||| | ||||| ||||| || | |||||||| ||||||| ||||| || Sbjct: 400 tcctatgagtacattagccaaggccttcgcacatacgacttggacaacaacatggatgga 459 Query: 404 ttctacatcgctcctgctttcatggacaagcttgtt 439 |||||||| || || ||||||||||||||||||||| Sbjct: 460 ttctacattgccccagctttcatggacaagcttgtt 495
>gb|U35111.1|NTU35111 Nicotiana tabacum rubisco activase precursor (Rca) mRNA, complete cds Length = 1674 Score = 79.8 bits (40), Expect = 7e-12 Identities = 82/96 (85%) Strand = Plus / Plus Query: 344 tcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggaggc 403 |||||||| ||||||||||| || || || ||||| |||| ||||||| ||| || Sbjct: 396 tcctacgaatacgtcagccaaggtcttcgccagtacaacttggacaacaagttggacgga 455 Query: 404 ttctacatcgctcctgctttcatggacaagcttgtt 439 |||||||||||||||||||||||||||||||||||| Sbjct: 456 ttctacatcgctcctgctttcatggacaagcttgtt 491
>ref|NM_179989.1| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2G39730 (RCA) transcript variant AT2G39730.2 mRNA, complete cds Length = 1815 Score = 73.8 bits (37), Expect = 4e-10 Identities = 88/105 (83%) Strand = Plus / Plus Query: 335 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 394 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 496 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 555 Query: 395 atgggaggcttctacatcgctcctgctttcatggacaagcttgtt 439 |||| || || ||||| ||||||||||||||||||||||||||| Sbjct: 556 atggatgggttttacattgctcctgctttcatggacaagcttgtt 600
>ref|NM_179990.1| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2G39730 (RCA) transcript variant AT2G39730.3 mRNA, complete cds Length = 1928 Score = 73.8 bits (37), Expect = 4e-10 Identities = 88/105 (83%) Strand = Plus / Plus Query: 335 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 394 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 496 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 555 Query: 395 atgggaggcttctacatcgctcctgctttcatggacaagcttgtt 439 |||| || || ||||| ||||||||||||||||||||||||||| Sbjct: 556 atggatgggttttacattgctcctgctttcatggacaagcttgtt 600
>ref|NM_129531.2| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2G39730 (RCA) transcript variant AT2G39730.1 mRNA, complete cds Length = 1833 Score = 73.8 bits (37), Expect = 4e-10 Identities = 88/105 (83%) Strand = Plus / Plus Query: 335 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 394 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 525 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 584 Query: 395 atgggaggcttctacatcgctcctgctttcatggacaagcttgtt 439 |||| || || ||||| ||||||||||||||||||||||||||| Sbjct: 585 atggatgggttttacattgctcctgctttcatggacaagcttgtt 629
>gb|BT000710.1| Arabidopsis thaliana clone RAFL09-90-K08 (R19890) unknown protein (At2g39730) mRNA, complete cds Length = 1697 Score = 73.8 bits (37), Expect = 4e-10 Identities = 88/105 (83%) Strand = Plus / Plus Query: 335 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 394 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 407 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 466 Query: 395 atgggaggcttctacatcgctcctgctttcatggacaagcttgtt 439 |||| || || ||||| ||||||||||||||||||||||||||| Sbjct: 467 atggatgggttttacattgctcctgctttcatggacaagcttgtt 511
>gb|BT000613.1| Arabidopsis thaliana Rubsico activase (At2g39730/T5I7.3) mRNA, complete cds Length = 1425 Score = 73.8 bits (37), Expect = 4e-10 Identities = 88/105 (83%) Strand = Plus / Plus Query: 335 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 394 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 322 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 381 Query: 395 atgggaggcttctacatcgctcctgctttcatggacaagcttgtt 439 |||| || || ||||| ||||||||||||||||||||||||||| Sbjct: 382 atggatgggttttacattgctcctgctttcatggacaagcttgtt 426
>gb|AY056108.1| Arabidopsis thaliana At2g39730/T5I7.3_ mRNA, complete cds Length = 1674 Score = 73.8 bits (37), Expect = 4e-10 Identities = 88/105 (83%) Strand = Plus / Plus Query: 335 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 394 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 410 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 469 Query: 395 atgggaggcttctacatcgctcctgctttcatggacaagcttgtt 439 |||| || || ||||| ||||||||||||||||||||||||||| Sbjct: 470 atggatgggttttacattgctcctgctttcatggacaagcttgtt 514
>gb|AY052703.1| Arabidopsis thaliana At2g39730/T5I7.3 mRNA, complete cds Length = 1693 Score = 73.8 bits (37), Expect = 4e-10 Identities = 88/105 (83%) Strand = Plus / Plus Query: 335 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 394 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 399 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 458 Query: 395 atgggaggcttctacatcgctcctgctttcatggacaagcttgtt 439 |||| || || ||||| ||||||||||||||||||||||||||| Sbjct: 459 atggatgggttttacattgctcctgctttcatggacaagcttgtt 503
>gb|AY052290.1| Arabidopsis thaliana At2g39730/T5I7.3 mRNA, complete cds Length = 1655 Score = 73.8 bits (37), Expect = 4e-10 Identities = 88/105 (83%) Strand = Plus / Plus Query: 335 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 394 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 407 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 466 Query: 395 atgggaggcttctacatcgctcctgctttcatggacaagcttgtt 439 |||| || || ||||| ||||||||||||||||||||||||||| Sbjct: 467 atggatgggttttacattgctcctgctttcatggacaagcttgtt 511
>gb|AF325049.2|AF325049 Arabidopsis thaliana At2g39730 (At2g39730/T5I7.3) mRNA, complete cds Length = 1674 Score = 73.8 bits (37), Expect = 4e-10 Identities = 88/105 (83%) Strand = Plus / Plus Query: 335 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 394 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 410 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 469 Query: 395 atgggaggcttctacatcgctcctgctttcatggacaagcttgtt 439 |||| || || ||||| ||||||||||||||||||||||||||| Sbjct: 470 atggatgggttttacattgctcctgctttcatggacaagcttgtt 514
>gb|AY088487.1| Arabidopsis thaliana clone 7114 mRNA, complete sequence Length = 1787 Score = 73.8 bits (37), Expect = 4e-10 Identities = 88/105 (83%) Strand = Plus / Plus Query: 335 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 394 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 525 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 584 Query: 395 atgggaggcttctacatcgctcctgctttcatggacaagcttgtt 439 |||| || || ||||| ||||||||||||||||||||||||||| Sbjct: 585 atggatgggttttacattgctcctgctttcatggacaagcttgtt 629
>emb|X14212.1|ATRCA Arabidopsis thaliana mRNA for rubisco activase Length = 1652 Score = 73.8 bits (37), Expect = 4e-10 Identities = 88/105 (83%) Strand = Plus / Plus Query: 335 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 394 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 391 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 450 Query: 395 atgggaggcttctacatcgctcctgctttcatggacaagcttgtt 439 |||| || || ||||| ||||||||||||||||||||||||||| Sbjct: 451 atggatgggttttacattgctcctgctttcatggacaagcttgtt 495
>gb|BT012795.1| Lycopersicon esculentum clone 113794R, mRNA sequence Length = 1519 Score = 71.9 bits (36), Expect = 2e-09 Identities = 36/36 (100%) Strand = Plus / Plus Query: 404 ttctacatcgctcctgctttcatggacaagcttgtt 439 |||||||||||||||||||||||||||||||||||| Sbjct: 473 ttctacatcgctcctgctttcatggacaagcttgtt 508
>gb|AF329935.1|AF329935 Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase activase 2 mRNA, partial cds Length = 1462 Score = 67.9 bits (34), Expect = 3e-08 Identities = 49/54 (90%) Strand = Plus / Plus Query: 386 gacaacaccatgggaggcttctacatcgctcctgctttcatggacaagcttgtt 439 ||||||| ||||| || ||||||||||||||||| |||||||||||||||||| Sbjct: 257 gacaacaacatggatggtttctacatcgctcctgcattcatggacaagcttgtt 310
>emb|Z14980.1|NTRCAJQ4 N.tabacum Rca gene for ribulose bisphosphate carboxylase activase (pJQ4) Length = 1655 Score = 63.9 bits (32), Expect = 4e-07 Identities = 35/36 (97%) Strand = Plus / Plus Query: 404 ttctacatcgctcctgctttcatggacaagcttgtt 439 ||||||||||||||| |||||||||||||||||||| Sbjct: 426 ttctacatcgctccttctttcatggacaagcttgtt 461
>gb|DQ233255.1| Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase activase alpha 2 mRNA, complete cds Length = 1433 Score = 60.0 bits (30), Expect = 6e-06 Identities = 48/54 (88%) Strand = Plus / Plus Query: 386 gacaacaccatgggaggcttctacatcgctcctgctttcatggacaagcttgtt 439 ||||||| ||||| || |||||||| |||||||| |||||||||||||||||| Sbjct: 256 gacaacaacatggatggtttctacattgctcctgcattcatggacaagcttgtt 309
>gb|AC003000.3| Arabidopsis thaliana chromosome 2 clone T5I7 map CIC10A06, complete sequence Length = 92624 Score = 58.0 bits (29), Expect = 3e-05 Identities = 32/33 (96%) Strand = Plus / Minus Query: 407 tacatcgctcctgctttcatggacaagcttgtt 439 ||||| ||||||||||||||||||||||||||| Sbjct: 14910 tacattgctcctgctttcatggacaagcttgtt 14878
>gb|M86720.1|ATHRBCOALP Arabidopisis thaliana ribulose bisphosphate carboxylase/oxygenase activase (rca) gene, complete cds Length = 3974 Score = 58.0 bits (29), Expect = 3e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 407 tacatcgctcctgctttcatggacaagcttgtt 439 ||||| ||||||||||||||||||||||||||| Sbjct: 2373 tacattgctcctgctttcatggacaagcttgtt 2405
>emb|Z21794.1|MDRBSCACA M.domestica ribulose-1,5-bisphosphate carboxylase/oxygenase activase mRNA Length = 1853 Score = 56.0 bits (28), Expect = 1e-04 Identities = 52/60 (86%) Strand = Plus / Plus Query: 247 ctccgacgaccagcaggacatcaccagagggaagggcatcgtggactcgctcttccaggc 306 |||||||||||| || |||||||| ||||| ||||| | |||||||| ||||||||||| Sbjct: 319 ctccgacgaccaacaagacatcacaagaggaaagggtaaggtggactccctcttccaggc 378
>gb|AF126870.2|AF126870 Vigna radiata rubisco activase (Rca) mRNA, complete cds; nuclear gene for chloroplast product Length = 1671 Score = 54.0 bits (27), Expect = 4e-04 Identities = 51/59 (86%) Strand = Plus / Plus Query: 224 tggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 282 ||||||||||| || ||||||||||| || ||||| || |||||||| || |||||||| Sbjct: 295 tggaagggtctggcctacgatatctctgatgaccaacaagacatcacaagggggaaggg 353 Score = 48.1 bits (24), Expect = 0.024 Identities = 33/36 (91%) Strand = Plus / Plus Query: 404 ttctacatcgctcctgctttcatggacaagcttgtt 439 |||||||| ||||||||||| |||||||||||||| Sbjct: 469 ttctacattgctcctgcttttctggacaagcttgtt 504
>gb|AF052424.1|AF052424 Datisca glomerata rubisco activase precursor, gene, partial cds Length = 1216 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 404 ttctacatcgctcctgctttcatggacaagcttgt 438 |||||||| ||||| |||||||||||||||||||| Sbjct: 6 ttctacatagctccagctttcatggacaagcttgt 40
>gb|AF047352.1|AF047352 Datisca glomerata rubisco activase precursor, mRNA, complete cds Length = 1634 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 404 ttctacatcgctcctgctttcatggacaagcttgt 438 |||||||| ||||| |||||||||||||||||||| Sbjct: 476 ttctacatagctccagctttcatggacaagcttgt 510
>gb|AF037361.1|AF037361 Lycopersicon pennellii rubisco activase mRNA, complete cds Length = 1656 Score = 54.0 bits (27), Expect = 4e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 401 ggcttctacatcgctcctgctttcatggacaagcttgtt 439 ||||||||||| || ||||||||||||||||| |||||| Sbjct: 434 ggcttctacattgcccctgctttcatggacaaacttgtt 472
>gb|AC129090.22| Medicago truncatula clone mth2-14i8, complete sequence Length = 163160 Score = 52.0 bits (26), Expect = 0.002 Identities = 47/54 (87%) Strand = Plus / Minus Query: 386 gacaacaccatgggaggcttctacatcgctcctgctttcatggacaagcttgtt 439 ||||||||||||| || || ||||| || |||||||| ||||||||||||||| Sbjct: 84295 gacaacaccatggatggtttttacattgcacctgcttttatggacaagcttgtt 84242
>emb|AJ271896.1|PHA271896 Pinus halepensis partial mRNA for rubisco activase (rca gene) Length = 678 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Plus Query: 406 ctacatcgctcctgctttcatggacaagcttgtt 439 |||||| ||||||||||| ||||||||||||||| Sbjct: 156 ctacattgctcctgcttttatggacaagcttgtt 189
>gb|AY312576.1| Larrea tridentata Rubisco activase beta form precursor (RCA2) mRNA, complete cds; nuclear gene for chloroplast product Length = 1694 Score = 48.1 bits (24), Expect = 0.024 Identities = 54/64 (84%) Strand = Plus / Plus Query: 375 agtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagc 434 ||||| |||| ||||||| ||||| || |||||||| || || || ||||||||||||| Sbjct: 431 agtacaacttggacaacaacatggacggtttctacatagcaccagccttcatggacaagc 490 Query: 435 ttgt 438 |||| Sbjct: 491 ttgt 494
>gb|AY312575.1| Larrea tridentata Rubisco activase alpha form precursor (RCA1) mRNA, complete cds; nuclear gene for chloroplast product Length = 1724 Score = 48.1 bits (24), Expect = 0.024 Identities = 54/64 (84%) Strand = Plus / Plus Query: 375 agtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagc 434 ||||| |||| ||||||| ||||| || |||||||| || || || ||||||||||||| Sbjct: 431 agtacaacttggacaacaacatggacggtttctacatagcaccagccttcatggacaagc 490 Query: 435 ttgt 438 |||| Sbjct: 491 ttgt 494
>gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase (rca2) mRNA, partial cds Length = 1436 Score = 48.1 bits (24), Expect = 0.024 Identities = 30/32 (93%) Strand = Plus / Plus Query: 407 tacatcgctcctgctttcatggacaagcttgt 438 ||||||||||| || ||||||||||||||||| Sbjct: 87 tacatcgctccggccttcatggacaagcttgt 118
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 46.1 bits (23), Expect = 0.096 Identities = 23/23 (100%) Strand = Plus / Minus Query: 249 ccgacgaccagcaggacatcacc 271 ||||||||||||||||||||||| Sbjct: 1452088 ccgacgaccagcaggacatcacc 1452066
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome Length = 5650368 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 291 actcgctcttccaggcgcccac 312 |||||||||||||||||||||| Sbjct: 2553524 actcgctcttccaggcgcccac 2553503
>gb|AE015925.1| Chlamydophila caviae GPIC, complete genome Length = 1173390 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 106 gaagaagctcaagaagcaggtg 127 |||||||||||||||||||||| Sbjct: 632957 gaagaagctcaagaagcaggtg 632978
>emb|CR701838.2|CNS0G4HM Tetraodon nigroviridis full-length cDNA Length = 929 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 34 cagcacagagatggctgctgc 54 ||||||||||||||||||||| Sbjct: 531 cagcacagagatggctgctgc 511
>emb|CR686472.2|CNS0FSMS Tetraodon nigroviridis full-length cDNA Length = 939 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 34 cagcacagagatggctgctgc 54 ||||||||||||||||||||| Sbjct: 541 cagcacagagatggctgctgc 521
>emb|CR681817.2|CNS0FP1H Tetraodon nigroviridis full-length cDNA Length = 992 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 34 cagcacagagatggctgctgc 54 ||||||||||||||||||||| Sbjct: 595 cagcacagagatggctgctgc 575
>emb|CR680161.1|CNS0FNRH Tetraodon nigroviridis full-length cDNA Length = 1318 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 34 cagcacagagatggctgctgc 54 ||||||||||||||||||||| Sbjct: 932 cagcacagagatggctgctgc 912
>emb|CR675309.2|CNS0FK1F Tetraodon nigroviridis full-length cDNA Length = 1006 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 34 cagcacagagatggctgctgc 54 ||||||||||||||||||||| Sbjct: 609 cagcacagagatggctgctgc 589
>gb|AY117142.1| Chenopodium quinoa rubisco activase (rca) mRNA, complete cds Length = 1809 Score = 42.1 bits (21), Expect = 1.5 Identities = 33/37 (89%) Strand = Plus / Plus Query: 403 cttctacatcgctcctgctttcatggacaagcttgtt 439 ||||||||| || ||| |||||||||||||| ||||| Sbjct: 514 cttctacattgccccttctttcatggacaagattgtt 550
>gb|S45033.1| rubisco activase, ribulosebisphosphate carboxylase/oxygenase activase {alternatively spliced} [spinach, Genomic, 3691 nt] Length = 3691 Score = 42.1 bits (21), Expect = 1.5 Identities = 33/37 (89%) Strand = Plus / Plus Query: 403 cttctacatcgctcctgctttcatggacaagcttgtt 439 ||||||||| || ||||| || ||||||||||||||| Sbjct: 2067 cttctacattgcccctgcctttatggacaagcttgtt 2103
>emb|Y10657.1|CLRCAGENE C.littorale rca gene Length = 2513 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 401 ggcttctacatcgctcctgctttcatgga 429 |||||||||||| ||||||||||| |||| Sbjct: 1128 ggcttctacatctctcctgctttcctgga 1156
>gb|AF041068.1|AF041068 Phaseolus vulgaris rubisco activase (Rca1) mRNA, complete cds Length = 1627 Score = 42.1 bits (21), Expect = 1.5 Identities = 54/65 (83%) Strand = Plus / Plus Query: 375 agtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagc 434 ||||| |||| ||||||| || || || |||||||| ||||| ||||| ||||||||| Sbjct: 436 agtacaactttgacaacatcaaggatggtttctacattgctccagcttttttggacaagc 495 Query: 435 ttgtt 439 ||||| Sbjct: 496 ttgtt 500
>gb|CP000002.2| Bacillus licheniformis ATCC 14580, complete genome Length = 4222334 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 181 catggcagcggagaacatcg 200 |||||||||||||||||||| Sbjct: 1379894 catggcagcggagaacatcg 1379875
>gb|AY820769.1| Homo sapiens HCV NS5A trans-regulated protein 13 mRNA, complete cds Length = 2103 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 tggctgctgccttctcctcc 64 |||||||||||||||||||| Sbjct: 715 tggctgctgccttctcctcc 696
>gb|AE010322.1| Methanopyrus kandleri AV19 section 21 of 157 of the complete genome Length = 10732 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 245 atctccgacgaccagcaggacatc 268 |||||| ||||||||||||||||| Sbjct: 8676 atctcccacgaccagcaggacatc 8653
>gb|CP000110.1| Synechococcus sp. CC9605, complete genome Length = 2510659 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 185 gcagcggagaacatcgacga 204 |||||||||||||||||||| Sbjct: 173412 gcagcggagaacatcgacga 173393
>ref|XM_520373.1| PREDICTED: Pan troglodytes LOC464867 (LOC464867), mRNA Length = 1685 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 308 cccacgggcgacggcacccacgag 331 ||||||||||||| |||||||||| Sbjct: 1369 cccacgggcgacgtcacccacgag 1392
>ref|NM_001003053.1| Canis familiaris androgen receptor (dihydrotestosterone receptor; testicular feminization; spinal and bulbar muscular atrophy; Kennedy disease) (AR), mRNA Length = 3577 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 150 gcaagagctccaaggccaac 169 |||||||||||||||||||| Sbjct: 3271 gcaagagctccaaggccaac 3290
>ref|NM_004741.1| Homo sapiens nucleolar and coiled-body phosphoprotein 1 (NOLC1), mRNA Length = 2502 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 tggctgctgccttctcctcc 64 |||||||||||||||||||| Sbjct: 766 tggctgctgccttctcctcc 747
>gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, complete sequence Length = 384518 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 51 ctgccttctcctccaccgtc 70 |||||||||||||||||||| Sbjct: 240861 ctgccttctcctccaccgtc 240842
>gb|AE017333.1| Bacillus licheniformis DSM 13, complete genome Length = 4222645 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 181 catggcagcggagaacatcg 200 |||||||||||||||||||| Sbjct: 1380755 catggcagcggagaacatcg 1380736
>ref|NM_017617.2| Homo sapiens Notch homolog 1, translocation-associated (Drosophila) (NOTCH1), mRNA Length = 9312 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 308 cccacgggcgacggcacccacgag 331 ||||||||||||| |||||||||| Sbjct: 703 cccacgggcgacgtcacccacgag 726
>gb|BC001883.1| Homo sapiens nucleolar and coiled-body phosphoprotein 1, mRNA (cDNA clone MGC:1494 IMAGE:3533568), complete cds Length = 2464 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 tggctgctgccttctcctcc 64 |||||||||||||||||||| Sbjct: 722 tggctgctgccttctcctcc 703
>ref|XM_582842.2| PREDICTED: Bos taurus similar to chromodomain helicase DNA binding protein 4 (LOC506402), mRNA Length = 7219 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 48 ctgctgccttctcctccacc 67 |||||||||||||||||||| Sbjct: 5008 ctgctgccttctcctccacc 4989
>gb|DQ483716.1| Gymnogyps californianus clone 139F microsatellite sequence Length = 457 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 48 ctgctgccttctcctccacc 67 |||||||||||||||||||| Sbjct: 65 ctgctgccttctcctccacc 46
>gb|DQ483952.1| Gymnogyps californianus clone 118G microsatellite sequence Length = 470 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 48 ctgctgccttctcctccacc 67 |||||||||||||||||||| Sbjct: 65 ctgctgccttctcctccacc 46
>ref|XM_381225.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG01049.1) partial mRNA Length = 22443 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 106 gaagaagctcaagaagcagg 125 |||||||||||||||||||| Sbjct: 8385 gaagaagctcaagaagcagg 8404
>gb|BC006769.2| Homo sapiens nucleolar and coiled-body phosphoprotein 1, mRNA (cDNA clone MGC:5049 IMAGE:2900024), complete cds Length = 3237 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 tggctgctgccttctcctcc 64 |||||||||||||||||||| Sbjct: 232 tggctgctgccttctcctcc 213
>gb|AC115709.11| Mus musculus chromosome 12, clone RP23-76M3, complete sequence Length = 193170 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 401 ggcttctacatcgctcctgctttc 424 ||||||| |||||||||||||||| Sbjct: 147044 ggcttctgcatcgctcctgctttc 147067
>emb|AL592301.14| Human DNA sequence from clone RP11-413M3 on chromosome 9 Contains the 3' end of the gene for activator of G-protein signalling 3 (AGS3), two novel genes, the CARD9 gene for caspase recruitment domain family member 9, the SNAPC4 gene for a 190kDa small nuclear RNA activating complex polypeptide 4, the SDCCAG3 gene for serologically defined colon cancer antigen 3, the INPP5E gene for a 72kDa inositol polyphosphate-5-phosphatase, the gene for phosphatidylinositol polyphosphate 5-phosphatase type IV (PPI5PIV), a novel gene (KIAA0310), the 3' end of the NOTCH1 gene for Notch homolog 1 translocation-associated (Drosophila) and twenty CpG islands, complete sequence Length = 188462 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 308 cccacgggcgacggcacccacgag 331 ||||||||||||| |||||||||| Sbjct: 166513 cccacgggcgacgtcacccacgag 166490
>emb|AL500527.19| Human DNA sequence from clone RP11-302K17 on chromosome 10 Contains the gene for Hermansky-Pudlak syndrome-6 protein (HPS6), two pseudogenes for transcription elongation factor B (SIII), polypeptide 1, the LDB1 gene for LIM domain binding 1, a novel gene (KIAA0595), the NOLC1 gene for nucleolar and coiled-body phosphoprotein 1 and five CpG islands, complete sequence Length = 158434 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 tggctgctgccttctcctcc 64 |||||||||||||||||||| Sbjct: 101054 tggctgctgccttctcctcc 101035
>gb|BT009750.1| Synthetic construct Homo sapiens nucleolar and coiled-body phosphoprotein 1 mRNA, partial cds Length = 2103 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 tggctgctgccttctcctcc 64 |||||||||||||||||||| Sbjct: 715 tggctgctgccttctcctcc 696
>gb|AC104422.4| Homo sapiens chromosome 18, clone RP11-260B14, complete sequence Length = 147210 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 270 ccagagggaagggcatcgtg 289 |||||||||||||||||||| Sbjct: 35948 ccagagggaagggcatcgtg 35967
>emb|CR602162.1| full-length cDNA clone CS0DI026YK04 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1812 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 tggctgctgccttctcctcc 64 |||||||||||||||||||| Sbjct: 717 tggctgctgccttctcctcc 698
>dbj|AK056755.1| Homo sapiens cDNA FLJ32193 fis, clone PLACE6002345, highly similar to H.sapiens mRNA for nucleolar phosphoprotein p130 Length = 2288 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 tggctgctgccttctcctcc 64 |||||||||||||||||||| Sbjct: 570 tggctgctgccttctcctcc 551
>gb|AC091237.6| Mus musculus Strain C57BL7/J Chromosome 14 RP23-470F15, complete sequence Length = 177104 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 38 acagagatggctgctgcctt 57 |||||||||||||||||||| Sbjct: 121162 acagagatggctgctgcctt 121143
>gb|AF197950.1| Canis familiaris androgen receptor (AR) mRNA, complete cds Length = 3577 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 150 gcaagagctccaaggccaac 169 |||||||||||||||||||| Sbjct: 3271 gcaagagctccaaggccaac 3290
>gb|AC100806.2| Homo sapiens chromosome 18, clone CTB-2341H11, complete sequence Length = 81641 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 270 ccagagggaagggcatcgtg 289 |||||||||||||||||||| Sbjct: 47211 ccagagggaagggcatcgtg 47230
>gb|AC154546.2| Mus musculus BAC clone RP23-431I7 from chromosome 16, complete sequence Length = 180261 Score = 40.1 bits (20), Expect = 5.9 Identities = 35/40 (87%) Strand = Plus / Plus Query: 21 aaggtcgaccaagcagcacagagatggctgctgccttctc 60 |||||| ||||| ||||||| || ||||||||||||||| Sbjct: 111680 aaggtccaccaatgagcacagtgagggctgctgccttctc 111719
>gb|AF308602.1|AF308602 Homo sapiens NOTCH 1 (N1) mRNA, complete cds Length = 7693 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 308 cccacgggcgacggcacccacgag 331 ||||||||||||| |||||||||| Sbjct: 703 cccacgggcgacgtcacccacgag 726
>gb|AC019012.4|AC019012 Genomic Sequence For Arabidopsis thaliana Clone T3J11 From Chromosome V, complete sequence Length = 130299 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 160 caaggccaacaggttcacagtcat 183 ||||||||||||||||| |||||| Sbjct: 13824 caaggccaacaggttcagagtcat 13847
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 241 cgatatctccgacgaccagc 260 |||||||||||||||||||| Sbjct: 4182002 cgatatctccgacgaccagc 4181983
>gb|AY891983.1| Synthetic construct Homo sapiens clone FLH024209.01L nucleolar and coiled-body phosphoprotein 1 (NOLC1) mRNA, partial cds Length = 2103 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 tggctgctgccttctcctcc 64 |||||||||||||||||||| Sbjct: 715 tggctgctgccttctcctcc 696
>emb|CR974583.24| Mouse DNA sequence from clone RP23-118G7 on chromosome 12, complete sequence Length = 219072 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 401 ggcttctacatcgctcctgctttc 424 ||||||| |||||||||||||||| Sbjct: 141825 ggcttctgcatcgctcctgctttc 141848
>gb|AC018660.1|AC018660 Genomic Sequence For Arabidopsis thaliana Clone F11P10, Chromosome V, complete sequence Length = 105589 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 160 caaggccaacaggttcacagtcat 183 ||||||||||||||||| |||||| Sbjct: 27506 caaggccaacaggttcagagtcat 27483
>gb|AC134613.5| Mus musculus BAC clone RP23-133J23 from 8, complete sequence Length = 187148 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 107 aagaagctcaagaagcaggt 126 |||||||||||||||||||| Sbjct: 44669 aagaagctcaagaagcaggt 44650
>gb|AC153897.4| Mus musculus 10 BAC RP23-119E2 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 209755 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 tggctgctgccttctcctcc 64 |||||||||||||||||||| Sbjct: 46900 tggctgctgccttctcctcc 46919
>dbj|D21262.1|HUMORFGA Homo sapiens KIAA0035 mRNA, partial cds Length = 3727 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 tggctgctgccttctcctcc 64 |||||||||||||||||||| Sbjct: 708 tggctgctgccttctcctcc 689
>dbj|AP003156.1| Mus musculus genomic DNA, chromosome 16q clone:RP21-56O15, complete sequences Length = 162128 Score = 40.1 bits (20), Expect = 5.9 Identities = 35/40 (87%) Strand = Plus / Minus Query: 21 aaggtcgaccaagcagcacagagatggctgctgccttctc 60 |||||| ||||| ||||||| || ||||||||||||||| Sbjct: 108212 aaggtccaccaatgagcacagtgagggctgctgccttctc 108173
>gb|AE008692.1| Zymomonas mobilis subsp. mobilis ZM4, complete genome Length = 2056416 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 41 gagatggctgctgccttctcctcc 64 ||||||||||||||||||| |||| Sbjct: 472845 gagatggctgctgccttctgctcc 472822
>gb|M73980.1|HUMTAN1 Human TAN-1 mRNA (homologue of Drosophila Notch gene), 5' end Length = 7332 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 308 cccacgggcgacggcacccacgag 331 ||||||||||||| |||||||||| Sbjct: 703 cccacgggcgacgtcacccacgag 726
>emb|Z34289.1|HSNUCPP H.sapiens mRNA for nucleolar phosphoprotein p130 Length = 2502 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 tggctgctgccttctcctcc 64 |||||||||||||||||||| Sbjct: 766 tggctgctgccttctcctcc 747 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,284,147 Number of Sequences: 3902068 Number of extensions: 3284147 Number of successful extensions: 62083 Number of sequences better than 10.0: 107 Number of HSP's better than 10.0 without gapping: 107 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 61665 Number of HSP's gapped (non-prelim): 409 length of query: 439 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 417 effective length of database: 17,147,199,772 effective search space: 7150382304924 effective search space used: 7150382304924 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
