ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal14d15 |
|---|---|
| Clone Library Name | barley_pub |
>DSCL1_HUMAN (Q8TD84) Down syndrome cell adhesion molecule-like protein 1| precursor (Down syndrome cell adhesion molecule 2) Length = 2053 Score = 32.3 bits (72), Expect = 0.48 Identities = 13/28 (46%), Positives = 19/28 (67%) Frame = +2 Query: 122 PPGPRAHVPLPQGR*LPRDRRGHRQLGD 205 P GPR H+ +P+ + L D+ G +QLGD Sbjct: 1650 PQGPRLHIDIPRVQLLIEDKEGIKQLGD 1677
>DAPF_BACTN (Q8AAB7) Diaminopimelate epimerase (EC 5.1.1.7) (DAP epimerase)| Length = 267 Score = 31.6 bits (70), Expect = 0.81 Identities = 21/68 (30%), Positives = 36/68 (52%) Frame = +3 Query: 174 EIDVDIGSSAIATAILHLALGAVTSVTIDMGFLVESQSEEELPEKLFGAVRIAQMEMGSA 353 EI +D S I LH+ G VT+VT+DMG +E+++ + + F + R++ Sbjct: 96 EITLDT-RSGIKVLKLHVEGGKVTAVTVDMGSPLETEAVDFGDQFPFQSTRVSMGNPHLV 154 Query: 354 KYVETATE 377 +VE T+ Sbjct: 155 TFVEDITQ 162
>TIG_HELPY (P56420) Trigger factor (TF)| Length = 451 Score = 31.2 bits (69), Expect = 1.1 Identities = 26/85 (30%), Positives = 40/85 (47%) Frame = +3 Query: 123 LLGRALTCRYHKGDDYLEIDVDIGSSAIATAILHLALGAVTSVTIDMGFLVESQSEEELP 302 L+G ++ K D + EI+ DIG T +L V SV VE +EE++ Sbjct: 89 LIGSPNLTKFEKKDTHFEIEADIGLK--PTIVLDKIKECVPSVG------VEVPNEEKID 140 Query: 303 EKLFGAVRIAQMEMGSAKYVETATE 377 E R+ Q+ AK+V+T T+ Sbjct: 141 E------RLKQLAKDYAKFVDTNTQ 159
>CO4A2_HUMAN (P08572) Collagen alpha-2(IV) chain precursor| Length = 1712 Score = 30.4 bits (67), Expect = 1.8 Identities = 18/43 (41%), Positives = 23/43 (53%) Frame = +2 Query: 74 QGPLARPRHRGQLRRVPPGPRAHVPLPQGR*LPRDRRGHRQLG 202 QGP RP H GQ+ V R P P G P+ ++G+R LG Sbjct: 195 QGPPGRPGHVGQMGPVGAPGRPGPPGPPG---PKGQQGNRGLG 234
>CUTL1_CANFA (P39881) Homeobox protein cut-like 1 (CCAAT displacement protein)| (CDP) (Homeobox protein Clox) (Clox-1) (Fragment) Length = 975 Score = 30.0 bits (66), Expect = 2.4 Identities = 26/80 (32%), Positives = 32/80 (40%), Gaps = 1/80 (1%) Frame = +2 Query: 74 QGPLARPRHRGQLRRVPPGPRAHVPLPQG-R*LPRDRRGHRQLGDRHRHPASGAGRRHVG 250 +GP P RG P P A +G P R R+ R R A G GRR++ Sbjct: 832 RGPGPGPGRRGGGGPAPGAPAAPAAAARGPSRRPGARAKPRRRRRRRRRHARGGGRRYLS 891 Query: 251 DHRHGLPC*VPVRGGAARKA 310 G PC R GA R + Sbjct: 892 RPARGGPC--RARDGAHRSS 909
>VCAP_PRVIS (Q00705) Major capsid protein (MCP) (MCP142)| Length = 1330 Score = 30.0 bits (66), Expect = 2.4 Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 1/56 (1%) Frame = +2 Query: 77 GPLARPRHRGQLRRVPPGPRAHVPLPQGR*LPRDRRGHRQLGDRHR-HPASGAGRR 241 GP A P+ GQ+R +P ++PL RD RG DRHR PA+ A R Sbjct: 535 GPFAVPQVMGQVRAMPRIINGNIPLALCPVDFRDARGFELSVDRHRLAPATVAAVR 590
>TIG_WOLSU (Q7M7M4) Trigger factor (TF)| Length = 432 Score = 29.6 bits (65), Expect = 3.1 Identities = 34/125 (27%), Positives = 55/125 (44%) Frame = +3 Query: 27 DDAYRNARFKIVNRIVKGPWLVRATVGNYGACLLGRALTCRYHKGDDYLEIDVDIGSSAI 206 +DA R A ++++ +K +G + L+G Y+K D+ ++++V IG + Sbjct: 64 EDAEREALQELLDAALKD-------LGAEPSQLIGDPRITEYNKHDNGIDVEVKIGLAPE 116 Query: 207 ATAILHLALGAVTSVTIDMGFLVESQSEEELPEKLFGAVRIAQMEMGSAKYVETATEEPE 386 T S+T GF + S SEEE+ +L ME+ AK A P Sbjct: 117 IT--------LQESLTYVPGFELPSVSEEEINTRL--------MELAKAK----APLAPA 156 Query: 387 TAGKA 401 GKA Sbjct: 157 PEGKA 161
>GBX1_MOUSE (P82976) Homeobox protein GBX-1 (Gastrulation and brain-specific| homeobox protein 1) Length = 418 Score = 29.3 bits (64), Expect = 4.0 Identities = 25/72 (34%), Positives = 28/72 (38%) Frame = +2 Query: 131 PRAHVPLPQGR*LPRDRRGHRQLGDRHRHPASGAGRRHVGDHRHGLPC*VPVRGGAARKA 310 P P P R LP R + H A A RRH+G PC V RG AR+ Sbjct: 3 PEGDTPNPPARPLPPYER---ESAAPEPHCAEPAPRRHLGPRARSEPC-VSARG--ARRG 56 Query: 311 LRRCAHRADGDG 346 RA G G Sbjct: 57 PGSAMQRAAGGG 68
>LEPA_WOLTR (Q5GRW9) GTP-binding protein lepA| Length = 598 Score = 29.3 bits (64), Expect = 4.0 Identities = 14/41 (34%), Positives = 21/41 (51%) Frame = +3 Query: 294 ELPEKLFGAVRIAQMEMGSAKYVETATEEPETAGKAAPGFR 416 EL G + + +M K +T TEE + G+A PGF+ Sbjct: 249 ELSAGEVGFITASMRKMADCKVGDTITEEKKPCGEALPGFK 289
>RL1_HHV11 (O12396) Neurovirulence factor RL1 (Neurovirulence factor ICP34.5)| Length = 248 Score = 28.9 bits (63), Expect = 5.3 Identities = 13/25 (52%), Positives = 14/25 (56%) Frame = +2 Query: 89 RPRHRGQLRRVPPGPRAHVPLPQGR 163 R RHRG R PPGP VP Q + Sbjct: 4 RRRHRGPRRPRPPGPTGAVPTAQSQ 28
>ICP34_HHV11 (P36313) Infected cell protein ICP34.5 (Neurovirulence factor| ICP34.5) Length = 248 Score = 28.9 bits (63), Expect = 5.3 Identities = 13/25 (52%), Positives = 14/25 (56%) Frame = +2 Query: 89 RPRHRGQLRRVPPGPRAHVPLPQGR 163 R RHRG R PPGP VP Q + Sbjct: 4 RRRHRGPRRPRPPGPTGAVPTAQSQ 28
>F16P1_ORYSA (O64422) Fructose-1,6-bisphosphatase, chloroplast precursor (EC| 3.1.3.11) (D-fructose-1,6-bisphosphate 1-phosphohydrolase) (FBPase) Length = 406 Score = 28.9 bits (63), Expect = 5.3 Identities = 15/37 (40%), Positives = 20/37 (54%) Frame = -3 Query: 271 RKPMSMVTDVTAPSARCRMAVAIAELPMSTSISR*SS 161 R+P + +APS RC AV A P +T S+ SS Sbjct: 31 RQPGRLAGGSSAPSVRCMAAVDTASAPAATEASKKSS 67
>ICP34_HHV1D (P37318) Infected cell protein ICP34.5 (Neurovirulence factor| ICP34.5) Length = 252 Score = 28.9 bits (63), Expect = 5.3 Identities = 13/25 (52%), Positives = 14/25 (56%) Frame = +2 Query: 89 RPRHRGQLRRVPPGPRAHVPLPQGR 163 R RHRG R PPGP VP Q + Sbjct: 5 RRRHRGPRRPRPPGPTGAVPTAQSQ 29
>SYN1_HUMAN (P17600) Synapsin-1 (Synapsin I) (Brain protein 4.1)| Length = 705 Score = 28.9 bits (63), Expect = 5.3 Identities = 22/59 (37%), Positives = 26/59 (44%), Gaps = 2/59 (3%) Frame = +2 Query: 71 RQGP--LARPRHRGQLRRVPPGPRAHVPLPQGR*LPRDRRGHRQLGDRHRHPASGAGRR 241 RQGP RP +GQ GP A PLPQ LP +Q + P G GR+ Sbjct: 476 RQGPPLQQRPPPQGQQHLSGLGPPAGSPLPQR--LPSPTSAPQQPASQAAPPTQGQGRQ 532
>ICP34_HHV1N (P37319) Infected cell protein ICP34.5 (Neurovirulence factor| ICP34.5) Length = 245 Score = 28.9 bits (63), Expect = 5.3 Identities = 13/25 (52%), Positives = 14/25 (56%) Frame = +2 Query: 89 RPRHRGQLRRVPPGPRAHVPLPQGR 163 R RHRG R PPGP VP Q + Sbjct: 5 RRRHRGPRRPRPPGPTGAVPTAQSQ 29
>ICP34_HHV1F (P08353) Infected cell protein ICP34.5 (Neurovirulence factor| ICP34.5) Length = 263 Score = 28.9 bits (63), Expect = 5.3 Identities = 13/25 (52%), Positives = 14/25 (56%) Frame = +2 Query: 89 RPRHRGQLRRVPPGPRAHVPLPQGR 163 R RHRG R PPGP VP Q + Sbjct: 4 RRRHRGPRRPRPPGPTGAVPTAQSQ 28
>CP2B6_HUMAN (P20813) Cytochrome P450 2B6 (EC 1.14.14.1) (CYPIIB6) (P450 IIB1)| Length = 491 Score = 28.5 bits (62), Expect = 6.9 Identities = 30/85 (35%), Positives = 35/85 (41%), Gaps = 1/85 (1%) Frame = +2 Query: 95 RHRGQLRRVPPGPRAHVPLP-QGR*LPRDRRGHRQLGDRHRHPASGAGRRHVGDHRHGLP 271 RH R+PPGPR PLP G L DRRG + R R H+G + Sbjct: 22 RHPNTHDRLPPGPR---PLPLLGNLLQMDRRGLLKSFLRFREKYGDVFTVHLGPRPVVML 78 Query: 272 C*VPVRGGAARKALRRCAHRADGDG 346 C V A R+AL A G G Sbjct: 79 CGVE----AIREALVDKAEAFSGRG 99
>TIG_HELPJ (Q9ZL49) Trigger factor (TF)| Length = 451 Score = 28.5 bits (62), Expect = 6.9 Identities = 25/85 (29%), Positives = 40/85 (47%) Frame = +3 Query: 123 LLGRALTCRYHKGDDYLEIDVDIGSSAIATAILHLALGAVTSVTIDMGFLVESQSEEELP 302 L+G ++ K D + EI+ DIG T +L V SV VE +EE++ Sbjct: 89 LIGSPNFTKFEKKDTHFEIEADIGLK--PTIVLDKIQECVPSVG------VEVPNEEKVN 140 Query: 303 EKLFGAVRIAQMEMGSAKYVETATE 377 E R+ Q+ AK+V+T ++ Sbjct: 141 E------RLKQLAKDYAKFVDTDSQ 159
>M3K4_HUMAN (Q9Y6R4) Mitogen-activated protein kinase kinase kinase 4 (EC| 2.7.11.25) (MAPK/ERK kinase kinase 4) (MEK kinase 4) (MEKK 4) (MAP three kinase 1) Length = 1607 Score = 28.5 bits (62), Expect = 6.9 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 3/44 (6%) Frame = +2 Query: 68 HRQGPLARPRHRGQLRRVPPGPRAHVPLPQG---R*LPRDRRGH 190 HR P RP + PP P +P P+G R +P D R H Sbjct: 1145 HRNSP--RPMKVPRCHSDPPNPHLIIPTPEGFSTRSMPSDARSH 1186
>SYFB_PORGI (Q7MXR4) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase beta chain) (PheRS) Length = 819 Score = 28.1 bits (61), Expect = 9.0 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%) Frame = +3 Query: 105 GNYGACLLGRALTCRYHKGDDYLEI-DVDIGSSA 203 G ++G LTC H D+L I VD+G+ A Sbjct: 43 GGLRGLVIGHVLTCEEHPNSDHLHITTVDVGADA 76
>PO6F2_HUMAN (P78424) POU domain, class 6, transcription factor 2| (Retina-derived POU-domain factor 1) (RPF-1) Length = 684 Score = 28.1 bits (61), Expect = 9.0 Identities = 17/50 (34%), Positives = 22/50 (44%) Frame = +3 Query: 273 VESQSEEELPEKLFGAVRIAQMEMGSAKYVETATEEPETAGKAAPGFRVG 422 VES E+ P KLFGA G+ + T + A + P F VG Sbjct: 42 VESNDSEDTPSKLFGA-------RGNPALSDPGTPDQHQASQTHPPFPVG 84
>BNB_DROME (P29746) Protein bangles and beads| Length = 442 Score = 28.1 bits (61), Expect = 9.0 Identities = 15/46 (32%), Positives = 23/46 (50%) Frame = +3 Query: 270 LVESQSEEELPEKLFGAVRIAQMEMGSAKYVETATEEPETAGKAAP 407 +V ++ E +PE+ RI ++E AK EEP A +A P Sbjct: 201 VVAAEKETPVPEQPARQERINEIEQKDAKKDAAVAEEPAKAAEATP 246 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 45,791,137 Number of Sequences: 219361 Number of extensions: 865613 Number of successful extensions: 2591 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 2494 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2591 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2336739400 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
