>RCAA_HORVU (Q40073) Ribulose bisphosphate carboxylase/oxygenase activase A,|
           chloroplast precursor (RuBisCO activase A) (RA A)
          Length = 464

 Score =  229 bits (585), Expect = 9e-61
 Identities = 114/115 (99%), Positives = 114/115 (99%)
 Frame = +3

Query: 54  MAAAFSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDK 233
           MAAAFSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDK
Sbjct: 1   MAAAFSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDK 60

Query: 234 WKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFD 398
           WKGLAYDISDDQQDITRGKGIVDSLFQAPTG GTHEAVLSSYEYVSQGLRKYDFD
Sbjct: 61  WKGLAYDISDDQQDITRGKGIVDSLFQAPTGHGTHEAVLSSYEYVSQGLRKYDFD 115

>RCA_ORYSA (P93431) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 432

 Score =  199 bits (506), Expect = 1e-51
 Identities = 102/117 (87%), Positives = 106/117 (90%), Gaps = 2/117 (1%)
 Frame = +3

Query: 54  MAAAFSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTD- 230
           MAAAFSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSS  NRF VMA E +DE + TD 
Sbjct: 1   MAAAFSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSNINRFKVMAKE-LDEGKQTDQ 59

Query: 231 -KWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFD 398
            +WKGLAYDISDDQQDITRGKG VDSLFQAPTGDGTHEAVLSSYEY+SQGLR YDFD
Sbjct: 60  DRWKGLAYDISDDQQDITRGKGFVDSLFQAPTGDGTHEAVLSSYEYLSQGLRTYDFD 116

>RCA_MAIZE (Q9ZT00) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 433

 Score =  170 bits (431), Expect = 7e-43
 Identities = 89/121 (73%), Positives = 103/121 (85%), Gaps = 6/121 (4%)
 Frame = +3

Query: 54  MAAAFSSTVGAPASTPT--NFLGKKLKK-QVTSAVNYHGKSSKAN-RFTVMAAENIDEKR 221
           MAAAFSSTVGAPASTPT  +FLGKKL K QV++AV YHGKSS +N RF  MAA+ +DE +
Sbjct: 1   MAAAFSSTVGAPASTPTRSSFLGKKLNKPQVSAAVTYHGKSSSSNSRFKAMAAKEVDETK 60

Query: 222 NTD--KWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDF 395
            TD  +WKGLAYDISDDQQDITRGKG+VD+LFQAP GDGTH AVLSSY+Y+SQG + Y+F
Sbjct: 61  QTDEDRWKGLAYDISDDQQDITRGKGLVDNLFQAPMGDGTHVAVLSSYDYISQGQKSYNF 120

Query: 396 D 398
           D
Sbjct: 121 D 121

>RCAB_HORVU (Q42450) Ribulose bisphosphate carboxylase/oxygenase activase B,|
           chloroplast precursor (RuBisCO activase B) (RA B)
          Length = 425

 Score =  159 bits (401), Expect = 2e-39
 Identities = 85/119 (71%), Positives = 96/119 (80%), Gaps = 4/119 (3%)
 Frame = +3

Query: 54  MAAAFSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSKANRFT-VMAAEN-IDEKRNT 227
           MA+AFSSTVGAPASTPT FLGKK+K        YHG +   +R   VMAA+  +D+ + T
Sbjct: 1   MASAFSSTVGAPASTPTIFLGKKVKNY------YHGGNKMKSRVVRVMAAKKELDQGKQT 54

Query: 228 D--KWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFD 398
           D  +WKGLAYDISDDQQDITRGKGIVDSLFQAP GDGTHEA+LSSYEY+SQGLRKYDFD
Sbjct: 55  DADRWKGLAYDISDDQQDITRGKGIVDSLFQAPMGDGTHEAILSSYEYISQGLRKYDFD 113

>RCA_ARATH (P10896) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 474

 Score =  117 bits (294), Expect = 5e-27
 Identities = 63/110 (57%), Positives = 77/110 (70%)
 Frame = +3

Query: 69  SSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDKWKGLA 248
           S  V APAST   FLGKK    V +   +   + K+N    + A   D++ + D+W+GLA
Sbjct: 23  SGAVSAPAST---FLGKK----VVTVSRFAQSNKKSNGSFKVLAVKEDKQTDGDRWRGLA 75

Query: 249 YDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFD 398
           YD SDDQQDITRGKG+VDS+FQAP G GTH AVLSSYEYVSQGLR+Y+ D
Sbjct: 76  YDTSDDQQDITRGKGMVDSVFQAPMGTGTHHAVLSSYEYVSQGLRQYNLD 125

>RCA_MALDO (Q40281) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 437

 Score =  117 bits (292), Expect = 9e-27
 Identities = 63/112 (56%), Positives = 78/112 (69%), Gaps = 2/112 (1%)
 Frame = +3

Query: 69  SSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDK--WKG 242
           SS+   P+ST   FLG  LKK     VN    +SK +  ++    ++DE + TDK  WKG
Sbjct: 22  SSSASVPSST---FLGSSLKK-----VNSRFTNSKVSSGSLRIVASVDEDKQTDKDRWKG 73

Query: 243 LAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFD 398
           LA+D SDDQQDITRGKG VDSLFQAP G GTH A++SSYEY+S GLR+Y+FD
Sbjct: 74  LAFDTSDDQQDITRGKGKVDSLFQAPQGSGTHFAIMSSYEYISTGLRQYNFD 125

>RCA1_LARTR (Q7X9A0) Ribulose bisphosphate carboxylase/oxygenase activase 1,|
           chloroplast precursor (RuBisCO activase 1) (RA 1)
           (RubisCO activase alpha form)
          Length = 476

 Score =  115 bits (288), Expect = 3e-26
 Identities = 63/126 (50%), Positives = 83/126 (65%), Gaps = 11/126 (8%)
 Frame = +3

Query: 54  MAAAFSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSK----------ANRFTVMAAE 203
           MAAA+S TVGA    P +  G   +  +  +  + G S K          +  F ++A E
Sbjct: 1   MAAAYS-TVGAVNRAPLSLNGSGARASLVPSTAFFGSSLKKSAAKFPKASSGNFKIVAQE 59

Query: 204 -NIDEKRNTDKWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGL 380
            + D++ + DKWKGLAYDISDDQQDITRGKG+VD+LFQAP   GTH AV+SSY+Y+SQGL
Sbjct: 60  ISEDQQTDKDKWKGLAYDISDDQQDITRGKGMVDTLFQAPMQSGTHYAVMSSYDYISQGL 119

Query: 381 RKYDFD 398
           R+Y+ D
Sbjct: 120 RQYNLD 125

>RCA2_LARTR (Q7X999) Ribulose bisphosphate carboxylase/oxygenase activase 2,|
           chloroplast precursor (RuBisCO activase 2) (RA 2)
           (RubisCO activase beta form)
          Length = 435

 Score =  115 bits (288), Expect = 3e-26
 Identities = 63/126 (50%), Positives = 83/126 (65%), Gaps = 11/126 (8%)
 Frame = +3

Query: 54  MAAAFSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSK----------ANRFTVMAAE 203
           MAAA+S TVGA    P +  G   +  +  +  + G S K          +  F ++A E
Sbjct: 1   MAAAYS-TVGAVNRAPLSLNGSGARASLVPSTAFFGSSLKKSAAKFPKASSGNFKIVAQE 59

Query: 204 -NIDEKRNTDKWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGL 380
            + D++ + DKWKGLAYDISDDQQDITRGKG+VD+LFQAP   GTH AV+SSY+Y+SQGL
Sbjct: 60  ISEDQQTDKDKWKGLAYDISDDQQDITRGKGMVDTLFQAPMQSGTHYAVMSSYDYISQGL 119

Query: 381 RKYDFD 398
           R+Y+ D
Sbjct: 120 RQYNLD 125

>RCA1_TOBAC (Q40460) Ribulose bisphosphate carboxylase/oxygenase activase 1,|
           chloroplast precursor (RuBisCO activase 1) (RA 1)
          Length = 442

 Score =  114 bits (284), Expect = 7e-26
 Identities = 66/125 (52%), Positives = 78/125 (62%), Gaps = 16/125 (12%)
 Frame = +3

Query: 72  STVGAPASTP--------------TNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENI 209
           ST+GA   TP              T F GK LKK     V+    ++K+ R  V    ++
Sbjct: 6   STIGAVNKTPLSLNNSVAGTSVPSTAFFGKTLKKVYGKGVSSPKVTNKSLRI-VAEQIDV 64

Query: 210 DEKRNTD--KWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLR 383
           D K+ TD  +WKGL  D SDDQQDITRGKG+VDSLFQAPTG GTH AVL SYEYVSQGLR
Sbjct: 65  DPKKQTDSDRWKGLVQDFSDDQQDITRGKGMVDSLFQAPTGTGTHHAVLQSYEYVSQGLR 124

Query: 384 KYDFD 398
           +Y+ D
Sbjct: 125 QYNLD 129

>RCA_PHAAU (O98997) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 439

 Score =  111 bits (277), Expect = 5e-25
 Identities = 63/107 (58%), Positives = 75/107 (70%), Gaps = 3/107 (2%)
 Frame = +3

Query: 81  GAPASTPTN-FLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNT--DKWKGLAY 251
           GA AS PT+ F G  LKK V S V  + K +  +   V A + I+E + T  D+WKGLAY
Sbjct: 22  GAGASAPTSAFFGTSLKKAVASRVP-NSKVTNGSFKIVAAEKEIEESQQTNKDRWKGLAY 80

Query: 252 DISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYD 392
           DISDDQQDITRGKG+VD LFQAP   GTH AV+SSYEY+S GLR+ D
Sbjct: 81  DISDDQQDITRGKGMVDPLFQAPMDAGTHYAVMSSYEYLSTGLRQLD 127

>RCA2_TOBAC (Q40565) Ribulose bisphosphate carboxylase/oxygenase activase 2,|
           chloroplast precursor (RuBisCO activase 2) (RA 2)
          Length = 439

 Score =  110 bits (275), Expect = 8e-25
 Identities = 62/116 (53%), Positives = 75/116 (64%), Gaps = 4/116 (3%)
 Frame = +3

Query: 63  AFSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAE--NIDEKRNT--D 230
           + +++V   +   T F GK LKK     V+        NR   +AAE  + D K+ T  D
Sbjct: 17  SLNNSVAGTSVPSTAFFGKTLKKVYGKGVS---SPKVTNRSLRIAAEEKDADPKKQTYSD 73

Query: 231 KWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFD 398
           +WKGL  D SDDQQDI RGKG+VDSLFQAPTG GTH AVL SYEYVSQGLR+Y+ D
Sbjct: 74  RWKGLVQDFSDDQQDIARGKGMVDSLFQAPTGTGTHHAVLQSYEYVSQGLRQYNMD 129

>RCA_PHAVU (O64981) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 441

 Score =  109 bits (272), Expect = 2e-24
 Identities = 59/109 (54%), Positives = 79/109 (72%), Gaps = 3/109 (2%)
 Frame = +3

Query: 81  GAPASTPTN-FLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNT--DKWKGLAY 251
           G  AS P++ F G  LKK ++S V  + K +  +   V A + I+E + T  D+W+GLAY
Sbjct: 22  GGGASGPSSAFFGTSLKKVISSRVP-NSKLTSGSFKIVAADKEIEETQQTEGDRWRGLAY 80

Query: 252 DISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFD 398
           D+SDDQQDITRGKG+VDSLFQAP   GTH AV+SS++Y+S GLR+Y+FD
Sbjct: 81  DVSDDQQDITRGKGLVDSLFQAPMDAGTHYAVISSHKYLSAGLRQYNFD 129

>RCA_SPIOL (P10871) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 472

 Score =  107 bits (268), Expect = 5e-24
 Identities = 62/106 (58%), Positives = 69/106 (65%), Gaps = 1/106 (0%)
 Frame = +3

Query: 84  APASTPTN-FLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDKWKGLAYDIS 260
           A AS PT+ FLG  LKK           SS+    TV AAEN  E++NTDKW  LA D S
Sbjct: 23  AGASVPTSGFLGSSLKKHTNVRFP---SSSRTTSMTVKAAEN--EEKNTDKWAHLAKDFS 77

Query: 261 DDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFD 398
           DDQ DI RGKG+VDSLFQAP   GTH  + SS+EY SQGLRKYD D
Sbjct: 78  DDQLDIRRGKGMVDSLFQAPADAGTHVPIQSSFEYESQGLRKYDID 123

>RCA_CUCSA (Q01587) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 413

 Score =  107 bits (267), Expect = 7e-24
 Identities = 61/127 (48%), Positives = 77/127 (60%), Gaps = 14/127 (11%)
 Frame = +3

Query: 60  AAFSSTVGAPASTPTN------------FLGKKLKKQVTSAVNYHGKSSK--ANRFTVMA 197
           AA  ST+GA   T  N            FLG +LK      V+    +SK     F ++A
Sbjct: 2   AATVSTIGAVNRTTLNNSNYGGLVPNSAFLGSRLK------VSSRFTTSKMVTGNFKIVA 55

Query: 198 AENIDEKRNTDKWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQG 377
            ++ +++   DKW+GLA+D SDDQQDITRGKG+ D LFQAP G GTH AVLSSYEY+S G
Sbjct: 56  EQDEEKQTEKDKWRGLAFDTSDDQQDITRGKGLADPLFQAPMGTGTHNAVLSSYEYISAG 115

Query: 378 LRKYDFD 398
           LR Y +D
Sbjct: 116 LRDYSYD 122

>RCA_LYCPN (O49074) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 459

 Score =  106 bits (264), Expect = 2e-23
 Identities = 60/127 (47%), Positives = 75/127 (59%), Gaps = 14/127 (11%)
 Frame = +3

Query: 60  AAFSSTVGAPASTP--------------TNFLGKKLKKQVTSAVNYHGKSSKANRFTVMA 197
           AA  ST+GA +  P              T F GK LKK     V+       +NR   + 
Sbjct: 2   AASVSTIGAASKAPLSLNNSVAGTSVPSTAFFGKSLKKVYAKGVS---SPKVSNRNLRVV 58

Query: 198 AENIDEKRNTDKWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQG 377
           A+ +DE +  D+WKGL  + SDDQQDI RGKG+VDSLFQAPTG GTH A+++SYEYVSQ 
Sbjct: 59  AQEVDETKE-DRWKGLYDNTSDDQQDIARGKGLVDSLFQAPTGTGTHHAIMNSYEYVSQA 117

Query: 378 LRKYDFD 398
           L+ Y  D
Sbjct: 118 LKTYQLD 124

>RCA_CHLRE (P23489) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 408

 Score = 57.8 bits (138), Expect = 6e-09
 Identities = 30/62 (48%), Positives = 40/62 (64%), Gaps = 3/62 (4%)
 Frame = +3

Query: 216 KRNTDKWKGL--AYDISDDQQDITRGKGIVDSLFQAPTG-DGTHEAVLSSYEYVSQGLRK 386
           ++   +W+ +    D SDDQQDITRG+ +VD LFQ   G  GTH AVLSS EY+SQ    
Sbjct: 37  RKQMGRWRSIDAGVDASDDQQDITRGREMVDDLFQGGFGAGGTHNAVLSSQEYLSQSRAS 96

Query: 387 YD 392
           ++
Sbjct: 97  FN 98

>RS3A_PICTO (Q6KYU3) 30S ribosomal protein S3Ae|
          Length = 209

 Score = 31.2 bits (69), Expect = 0.62
 Identities = 21/85 (24%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
 Frame = +3

Query: 84  APASTPTNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDKWKGLAYDISD 263
           +PA+ P+  +G+K++  V+   ++ G   K++   +   +    KR T ++ G  + +SD
Sbjct: 35  SPAADPSLMIGRKVEVPVS---DFTGNFRKSSTMVIFRVKECTGKRCTTEFIG--HKVSD 89

Query: 264 D--QQDITRGKGIVDSLFQAPTGDG 332
           D  ++ + R K  +D +  + T DG
Sbjct: 90  DTIRRMVRRRKERIDIIMPSKTKDG 114

>PTR2_CANAL (P46030) Peptide transporter PTR2|
          Length = 623

 Score = 31.2 bits (69), Expect = 0.62
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 10/59 (16%)
 Frame = -2

Query: 331 PSPVGAWKSESTMPFPLVMSCW----SSEISYAR------PFHLSVFLFSSMFSAAMTV 185
           P+P+ AWK+ S         CW    + E++Y R          ++FL  S FSAA+++
Sbjct: 488 PAPITAWKASSLFILAAAGECWAYTTAYELAYTRSPPALKSLVYALFLVMSAFSAALSL 546

>CASZ1_MOUSE (Q9CWL2) Castor homolog 1 zinc finger protein (Castor-related|
           protein) (Fragment)
          Length = 255

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +3

Query: 30  QGRPSSTEMAAAFSSTVGAPASTPTNFLGKKLKKQV 137
           QG PS     +  +   G+PA  P+ FLGK +K  V
Sbjct: 52  QGNPSLESFLSIKTEAEGSPAGEPSPFLGKAVKALV 87

>PTN13_MOUSE (Q64512) Tyrosine-protein phosphatase non-receptor type 13 (EC|
           3.1.3.48) (Protein tyrosine phosphatase PTP-BL)
           (Protein-tyrosine phosphatase RIP) (protein tyrosine
           phosphatase DPZPTP) (PTP36)
          Length = 2453

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +3

Query: 252 DISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRK 386
           D S   +D  RGKG+            THEA LS   +V++GL K
Sbjct: 195 DRSQAIRDRLRGKGLPTGRSSTSDALDTHEAPLSQQTFVNKGLSK 239

>RT107_YEAST (P38850) Regulator of Ty1 transposition protein 107|
          Length = 1070

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 14/53 (26%), Positives = 28/53 (52%)
 Frame = +3

Query: 162 KSSKANRFTVMAAENIDEKRNTDKWKGLAYDISDDQQDITRGKGIVDSLFQAP 320
           K  + +   +++ E++  K++TDK+  L   +SD+   I   K  V+S +  P
Sbjct: 688 KQGEESTGKLISTEDVTSKKDTDKFSHLFEGLSDNDDHINDEKPAVNSKYTTP 740

>DHOM_HELPJ (Q9ZL20) Homoserine dehydrogenase (EC 1.1.1.3) (HDH)|
          Length = 421

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 219 RNTDKWKGLAYDISDDQQDITRGKGI 296
           R+  K KG A++ISDD + +   KGI
Sbjct: 46  RDVKKHKGYAFEISDDLESVIEDKGI 71

>SWC3_ASHGO (Q758T8) SWR1-complex protein 3|
          Length = 688

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
 Frame = +3

Query: 60  AAFSSTVGAPASTPTNF-LGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDKW 236
           A  SST GAP      F  G  + K  TSA+  HG  S+      + AE     R   K+
Sbjct: 434 ATLSSTDGAPPLNRRQFPCGIWVTKMQTSALEAHGAISEKGTTITIKAEEGTAPRQKRKY 493

Query: 237 KGLAYDISDDQQDI 278
                ++ D+ + +
Sbjct: 494 TKRKKEVEDEDKSM 507

>TRIPC_HUMAN (Q14669) Thyroid receptor-interacting protein 12 (TRIP12)|
          Length = 1992

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 14/27 (51%), Positives = 15/27 (55%)
 Frame = +2

Query: 11  AHPPLLARSTKQHRDGCCLLLHRRGSG 91
           A  P L RST+Q   G C    RRGSG
Sbjct: 315 AELPSLRRSTRQKTTGSCASTSRRGSG 341

>HTRA_LACLA (Q9LA06) Serine protease do-like htrA (EC 3.4.21.-) (HtrALl)|
          Length = 408

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 24/107 (22%), Positives = 46/107 (42%)
 Frame = +3

Query: 72  STVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDKWKGLAY 251
           S V    +T      KK+   V S +NY   +S+++ F+ +   N     +TD  + L+ 
Sbjct: 48  SNVSVNVNTDVTSAIKKVSNSVVSVMNYQKDNSQSSDFSSIFGGNSGSSSSTDGLQ-LSS 106

Query: 252 DISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYD 392
           + S      + G   V + +    G+ + + +LS  + V   +  YD
Sbjct: 107 EGSGVIYKKSGGDAYVVTNYHVIAGNSSLDVLLSGGQKVKASVVGYD 153

>RSMB_PSEPK (Q88RR3) Ribosomal RNA small subunit methyltransferase B (EC|
           2.1.1.-) (rRNA (cytosine-C(5)-)-methyltransferase) (16S
           rRNA m5C967 methyltransferase)
          Length = 436

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +2

Query: 5   SRAHPPLLARSTKQH--RDGCCLLLHRRGSGFYADQLPRE 118
           + AHPP++ R  ++H  RD    LL   G G  A Q  R+
Sbjct: 165 NNAHPPMILRVNRRHHSRDAYLALLAEAGIGASACQYSRD 204

>NORM_OCEIH (Q8CUL5) Probable multidrug resistance protein norM|
           (Multidrug-efflux transporter)
          Length = 447

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 10/57 (17%)
 Frame = -2

Query: 337 WVPSPVGAWKSESTMPF----------PLVMSCWSSEISYARPFHLSVFLFSSMFSA 197
           W+ S +  +      PF          P  +S W+ ++    P  L++F  +S+FSA
Sbjct: 205 WIISGISIFMIHRVYPFHSYKVFQKILPPTLSYWADQLKIGLPIGLAIFFETSIFSA 261

>RS7_PSYAR (Q4FQG4) 30S ribosomal protein S7|
          Length = 157

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
 Frame = +3

Query: 99  PTNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDKWKGLAYDISDDQQDI 278
           P    G +   +  + V  HGK S A R    A E + +KRN +       D+ ++ + +
Sbjct: 14  PDPKFGSQTVAKFINHVMSHGKKSTAERIVYGALETVSQKRNIEDPVSFFEDVLENVRPM 73

Query: 279 --TRGKGIVDSLFQAP 320
              + + +  + +Q P
Sbjct: 74  VEVKARRVGGATYQVP 89

>AAPP_RHILV (Q52815) General L-amino acid transport ATP-binding protein aapP|
          Length = 257

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = +3

Query: 174 ANRFTVMAAENIDEKRNTDKWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDG 332
           A + TV A E   E  N +KW G  + + D    + RG+ IV      P+G G
Sbjct: 6   AKKLTVSATEVAVEIVNMNKWYGDFHVLRDINLKVMRGERIV---IAGPSGSG 55

>KADA_METTL (P43410) Adenylate kinase (EC 2.7.4.3) (ATP-AMP transphosphorylase)|
          Length = 192

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 23/96 (23%), Positives = 39/96 (40%)
 Frame = +3

Query: 81  GAPASTPTNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDKWKGLAYDIS 260
           G P    T    K ++K     +NY   +     F V   EN+ E R  D+ + L  D  
Sbjct: 10  GVPGVGGTTITQKAMEKLSEEGINYKMVNFGTVMFEVAQEENLVEDR--DQMRKLDPDTQ 67

Query: 261 DDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYV 368
              Q +  G+ I + + ++P    TH  + +   Y+
Sbjct: 68  KRIQKLA-GRKIAEMVKESPVVVDTHSTIKTPKGYL 102

>CASZ1_HUMAN (Q86V15) Castor homolog 1 zinc finger protein (Castor-related|
           protein)
          Length = 1044

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 30  QGRPSSTEMAAAFSSTVGAPASTPTNFLGKKLKKQV 137
           QG P    +    +   G+PA+ P+ FLGK +K  V
Sbjct: 841 QGNPGLGSLLNIKAEAEGSPAAEPSPFLGKAVKALV 876

>IF2A_METJA (Q57581) Translation initiation factor 2 alpha subunit|
           (eIF-2-alpha) (aIF2-alpha)
          Length = 266

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 13/55 (23%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
 Frame = +3

Query: 177 NRFTVMAAEN---IDEKRNTDKWKGLAYDISDDQQDIT--RGKGIVDSLFQAPTG 326
           N F  M  E    +D+   +++WK + Y+++ +  ++T    +G+++    AP G
Sbjct: 138 NAFETMVIEGKEVLDDLEISEEWKNVLYEVAKESIELTNVEVEGVIEMKSYAPDG 192

>CBID_BRUSU (Q8G018) Putative cobalt-precorrin-6A synthase [deacetylating] (EC|
           2.1.1.-)
          Length = 368

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 240 GLAYDISDDQQDITRGKGIVDSLFQAPTGDG 332
           G+  D  DD  D+T G  I+ +++ AP G G
Sbjct: 74  GIVKDAGDDP-DVTHGATIISTVYPAPPGTG 103

>CBID_BRUME (Q8YHU3) Putative cobalt-precorrin-6A synthase [deacetylating] (EC|
           2.1.1.-)
          Length = 369

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 240 GLAYDISDDQQDITRGKGIVDSLFQAPTGDG 332
           G+  D  DD  D+T G  I+ +++ AP G G
Sbjct: 74  GIVKDAGDDP-DVTHGATIISTVYPAPPGTG 103


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.312    0.118    0.350 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,897,823
Number of Sequences: 219361
Number of extensions: 880491
Number of successful extensions: 2526
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 2470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2518
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 1365190992
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)