>gb|AY659278.1| Synthetic construct Peudomonas aeruginosa clone FLH051808.01F
           PA1335 gene, partial cds
          Length = 1278

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 154 tctccatggcggtacaggcgatg 176
           |||||||||||||||||||||||
Sbjct: 215 tctccatggcggtacaggcgatg 237

>gb|AE004563.1| Pseudomonas aeruginosa PAO1, section 124 of 529 of the complete
            genome
          Length = 9937

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 154  tctccatggcggtacaggcgatg 176
            |||||||||||||||||||||||
Sbjct: 1248 tctccatggcggtacaggcgatg 1226

>emb|AL935270.6| Mouse DNA sequence from clone RP23-391A14 on chromosome 2, complete
             sequence
          Length = 127274

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 47    cttcctctcctttctgtctgtt 68
             ||||||||||||||||||||||
Sbjct: 62207 cttcctctcctttctgtctgtt 62186

>gb|AC124212.2| Mus musculus chromosome X clone CT7-532E7 map qA7.1, complete sequence
          Length = 109783

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 50    cctctcctttctgtctgttct 70
             |||||||||||||||||||||
Sbjct: 57258 cctctcctttctgtctgttct 57278

>ref|XM_756140.1| Ustilago maydis 521 hypothetical protein (UM05086.1) partial mRNA
          Length = 5505

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 206 tgtcctctcaaagctcgctaccatg 230
           |||||||||| ||||||||||||||
Sbjct: 318 tgtcctctcacagctcgctaccatg 342

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                            
Query: 195     gcgatgaactctgtcctctcaaagctcgc 223
               ||||||||||| |||||| ||||||||||
Sbjct: 3238041 gcgatgaactccgtcctcgcaaagctcgc 3238013

>gb|AC009230.3| Homo sapiens BAC clone RP11-343B21 from 2, complete sequence
          Length = 173993

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 290    gaccagcatgggaagcttccttgag 314
              ||||||||||||||| |||||||||
Sbjct: 172775 gaccagcatgggaagattccttgag 172751

>gb|AC079978.7| Homo sapiens BAC clone RP11-61H18 from 2, complete sequence
          Length = 5638

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 290  gaccagcatgggaagcttccttgag 314
            ||||||||||||||| |||||||||
Sbjct: 4857 gaccagcatgggaagattccttgag 4881

>dbj|AP002536.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0015I14
          Length = 150650

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 195   gcgatgaactctgtcctctcaaagctcgc 223
             ||||||||||| |||||| ||||||||||
Sbjct: 25404 gcgatgaactccgtcctcgcaaagctcgc 25376

>gb|AC002460.1|AC002460 Human BAC clone CTB-191D16, complete sequence
          Length = 174952

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 56     ctttctgtctgttctgttatc 76
              |||||||||||||||||||||
Sbjct: 172790 ctttctgtctgttctgttatc 172770

>emb|AL671874.17| Mouse DNA sequence from clone RP23-169I24 on chromosome X, complete
              sequence
          Length = 187669

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 50     cctctcctttctgtctgttct 70
              |||||||||||||||||||||
Sbjct: 178289 cctctcctttctgtctgttct 178309

>gb|AC131591.13| Mus musculus chromosome 1, clone RP24-541A5, complete sequence
          Length = 175644

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 46     gcttcctctcctttctgtctgttct 70
              ||||||| |||||||||||||||||
Sbjct: 101130 gcttcctatcctttctgtctgttct 101106

>gb|BC067986.2| Xenopus tropicalis RAD54-like (S. cerevisiae), mRNA (cDNA clone
            MGC:69368 IMAGE:5309406), complete cds
          Length = 2816

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 48   ttcctctcctttctgtctgt 67
            ||||||||||||||||||||
Sbjct: 1276 ttcctctcctttctgtctgt 1257

>gb|AC158347.4| Mus musculus chromosome 3, clone RP23-380F8, complete sequence
          Length = 193489

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 120    attgtatccatccattctga 139
              ||||||||||||||||||||
Sbjct: 163887 attgtatccatccattctga 163906

>ref|XM_545816.2| PREDICTED: Canis familiaris similar to transient receptor potential
            cation channel, subfamily M, member 1 (LOC488699), mRNA
          Length = 5983

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 134  ttctgaaaatctgatttgtt 153
            ||||||||||||||||||||
Sbjct: 4679 ttctgaaaatctgatttgtt 4660

>emb|AL353717.13| Human DNA sequence from clone RP11-562M8 on chromosome 9 Contains a
             novel pseudogene, a argininosuccinate synthetase (ASS)
             (CTLN1) pseudogene, the APTX gene for aprataxin, a
             transcription elongation factor A (SII), 1 pseudogene
             (GTF2SP) (TCEA1P) and 2 CpG islands, complete sequence
          Length = 120533

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 44    gagcttcctctcctttctgt 63
             ||||||||||||||||||||
Sbjct: 22827 gagcttcctctcctttctgt 22808

>ref|NM_001001241.2| Xenopus tropicalis RAD54-like (S. cerevisiae) (rad54l), mRNA
          Length = 2816

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 48   ttcctctcctttctgtctgt 67
            ||||||||||||||||||||
Sbjct: 1276 ttcctctcctttctgtctgt 1257

>gb|AC140778.15| Mus musculus chromosome 1, clone RP24-446J17, complete sequence
          Length = 160859

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 48    ttcctctcctttctgtctgt 67
             ||||||||||||||||||||
Sbjct: 68187 ttcctctcctttctgtctgt 68168

>gb|AC161377.6| Mus musculus BAC clone RP23-224D3 from chromosome 16, complete sequence
          Length = 201384

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 198    atgaactctgtcctctcaaagctc 221
              ||||| ||||||||||||||||||
Sbjct: 190243 atgaaatctgtcctctcaaagctc 190220

>gb|AY118394.1| Drosophila melanogaster RE52162 full insert cDNA
          Length = 4400

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 505  aagaactcaaggaacaagtc 524
            ||||||||||||||||||||
Sbjct: 2660 aagaactcaaggaacaagtc 2679

>ref|NM_164996.1| Drosophila melanogaster CG31760-RA (CG31760), mRNA
          Length = 4335

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 505  aagaactcaaggaacaagtc 524
            ||||||||||||||||||||
Sbjct: 2660 aagaactcaaggaacaagtc 2679

>gb|AC154208.2| Mus musculus BAC clone RP24-377L12 from chromosome 16, complete sequence
          Length = 178006

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 198    atgaactctgtcctctcaaagctc 221
              ||||| ||||||||||||||||||
Sbjct: 157520 atgaaatctgtcctctcaaagctc 157543

>gb|AC015553.21|AC015553 Homo sapiens 9 BAC RP11-100N10 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 162063

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 44     gagcttcctctcctttctgt 63
              ||||||||||||||||||||
Sbjct: 137536 gagcttcctctcctttctgt 137517

>gb|AC115949.13| Mus musculus chromosome 3, clone RP24-568B16, complete sequence
          Length = 177771

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 120   attgtatccatccattctga 139
             ||||||||||||||||||||
Sbjct: 35693 attgtatccatccattctga 35712

>emb|AL138995.5|CNS01DX0 Human chromosome 14 DNA sequence BAC C-2588E21 of library CalTech-D
             from chromosome 14 of Homo sapiens (Human), complete
             sequence
          Length = 163312

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 138   gaaaatctgatttgtttctc 157
             ||||||||||||||||||||
Sbjct: 72320 gaaaatctgatttgtttctc 72301

>emb|AL772189.7| Zebrafish DNA sequence from clone CH211-135B6 in linkage group 17,
             complete sequence
          Length = 183958

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 127   ccatccattctgaaaatctg 146
             ||||||||||||||||||||
Sbjct: 61779 ccatccattctgaaaatctg 61760


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,427,256
Number of Sequences: 3902068
Number of extensions: 4427256
Number of successful extensions: 80385
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 80325
Number of HSP's gapped (non-prelim): 60
length of query: 535
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 512
effective length of database: 17,143,297,704
effective search space: 8777368424448
effective search space used: 8777368424448
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)