>Y1829_MYCTU (Q50604) Hypothetical protein Rv1829/MT1877|
          Length = 164

 Score = 52.4 bits (124), Expect = 3e-07
 Identities = 27/112 (24%), Positives = 57/112 (50%)
 Frame = +3

Query: 9   EDGSDLLLPIIVMETPSIMLLAALRNIRIPRPTIYNVVKEMTEMMGYTVRLVRITEMVHD 188
           E   D  LPI + ++ +  +    + +  PRP  +++++++   +G++++ VRI ++   
Sbjct: 24  EANGDRYLPIWIGQSEAAAIALEQQGVEPPRPLTHDLIRDLIAALGHSLKEVRIVDLQEG 83

Query: 189 AYYSRLYLAKTGNEEEVISFDLKPSDAINIAFRCKVPIQVNKRIAYNNGLKV 344
            +Y+ L   +       I    +PSD++ IA R  VPI V + +    GL +
Sbjct: 84  TFYADLIFDRN------IKVSARPSDSVAIALRVGVPIYVEEAVLAQAGLLI 129

>GT2D1_HUMAN (Q9UHL9) General transcription factor II-I repeat domain-containing|
           protein 1 (GTF2I repeat domain-containing protein 1)
           (Muscle TFII-I repeat domain-containing protein 1)
           (General transcription factor III) (Slow-muscle-fiber
           enhancer binding
          Length = 959

 Score = 32.0 bits (71), Expect = 0.37
 Identities = 21/61 (34%), Positives = 32/61 (52%)
 Frame = +3

Query: 183 HDAYYSRLYLAKTGNEEEVISFDLKPSDAINIAFRCKVPIQVNKRIAYNNGLKVIQPKPT 362
           +DA  SR+ +A T  E+    F+ K  +A+ I +  +VP    KRI  N G  +I+  P 
Sbjct: 692 YDARLSRIDIANTLREQVQDLFNKKYGEALGIKYPVQVPY---KRIKSNPGSVIIEGLPP 748

Query: 363 G 365
           G
Sbjct: 749 G 749

>Y1857_THEMA (Q9X2H2) UPF0144 protein TM1857|
          Length = 508

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 1/100 (1%)
 Frame = +3

Query: 51  TPSIMLLAALRNIRIPRPTIYNVVKEMTEMMGYTVRLVRITEMVHD-AYYSRLYLAKTGN 227
           TP  +L+AA   +   RP      +E  E   Y  RL+++ E+     Y  + Y  + G 
Sbjct: 402 TPEAVLVAAADALSAARP---GARRESLE--NYIKRLMKLEEIAKSFKYVEKAYAIQAGR 456

Query: 228 EEEVISFDLKPSDAINIAFRCKVPIQVNKRIAYNNGLKVI 347
           E  VI    K  DA+       +  ++ + + Y   LKV+
Sbjct: 457 EIRVIVEPDKVDDALAEKLAYDISKKIEEELEYPGVLKVV 496

>ATC1_DUNBI (P54209) Cation-transporting ATPase CA1 (EC 3.6.3.-)|
          Length = 1037

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 26/104 (25%), Positives = 39/104 (37%)
 Frame = +3

Query: 54  PSIMLLAALRNIRIPRPTIYNVVKEMTEMMGYTVRLVRITEMVHDAYYSRLYLAKTGNEE 233
           P ++LL  + N  +   T  N  K + ++  Y            DA   R      G  +
Sbjct: 113 PMVILLILVANATVGVVTERNAEKAIEQLKSYEA---------DDATVLR-----NGQLQ 158

Query: 234 EVISFDLKPSDAINIAFRCKVPIQVNKRIAYNNGLKVIQPKPTG 365
            + S D+ P D + +A   KVP        Y   LK+ Q   TG
Sbjct: 159 LIPSADIVPGDIVELAVGNKVPADTRVSHIYTTSLKIDQSLLTG 202

>ABCD1_MOUSE (P48410) ATP-binding cassette sub-family D member 1|
           (Adrenoleukodystrophy protein) (ALDP)
          Length = 736

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = +3

Query: 108 IYNVVKEMTEMMGYTVRLVRITEMVHDAYYSRLYLAKTGNEEE 236
           I +  KE+TE+ GYT R+  + ++  D  + R    +TG+ EE
Sbjct: 402 IMSSYKEVTELAGYTARVYEMFQVFEDVKHCR--FKRTGDLEE 442

>HIS4_METBF (Q46CW8) 1-(5-phosphoribosyl)-5-[(5-|
           phosphoribosylamino)methylideneamino]
           imidazole-4-carboxamide isomerase (EC 5.3.1.16)
           (Phosphoribosylformimino-5-aminoimidazole carboxamide
           ribotide isomerase)
          Length = 245

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 15/26 (57%), Positives = 18/26 (69%)
 Frame = -2

Query: 106 VGLGIRMFRRAASSIILGVSMTIMGS 29
           VG GIR F  AAS + LGVS  I+G+
Sbjct: 84  VGGGIRSFEDAASLLELGVSRVILGT 109

>VNST_CVMJH (P26625) 30 kDa nonstructural protein (NS2 protein) (Protein 2A)|
          Length = 265

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 10  KMGAIFCSPLLSWRHQVLCYWPP 78
           K+G  +CS L  W  + LCY PP
Sbjct: 175 KVGGFYCSELSIWCGERLCYKPP 197

>HIS4_METAC (Q8TU55) 1-(5-phosphoribosyl)-5-[(5-|
           phosphoribosylamino)methylideneamino]
           imidazole-4-carboxamide isomerase (EC 5.3.1.16)
           (Phosphoribosylformimino-5-aminoimidazole carboxamide
           ribotide isomerase)
          Length = 245

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 15/26 (57%), Positives = 18/26 (69%)
 Frame = -2

Query: 106 VGLGIRMFRRAASSIILGVSMTIMGS 29
           VG GIR F  AAS + LGVS  I+G+
Sbjct: 84  VGGGIRSFEDAASLLELGVSRIILGT 109

>K2C4_HUMAN (P19013) Keratin, type II cytoskeletal 4 (Cytokeratin-4) (CK-4)|
           (Keratin-4) (K4)
          Length = 534

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 23/93 (24%), Positives = 42/93 (45%), Gaps = 2/93 (2%)
 Frame = +3

Query: 105 TIYNVVKEMTEMMGYTVRLVRITEMVHDAYYS--RLYLAKTGNEEEVISFDLKPSDAINI 278
           T +N++++ T     T    +  E + + Y S  R  L   GN++  +  +LK       
Sbjct: 181 TKWNLLQQQT-----TTTSSKNLEPLFETYLSVLRKQLDTLGNDKGRLQSELKTMQDSVE 235

Query: 279 AFRCKVPIQVNKRIAYNNGLKVIQPKPTGSYVN 377
            F+ K   ++NKR A  N   V++     +Y+N
Sbjct: 236 DFKTKYEEEINKRTAAENDFVVLKKDVDAAYLN 268

>RIMB2_CHICK (Q8QFX1) RIM-binding protein 2 (RIM-BP2)|
          Length = 1325

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 17  ERSSAPHYCHGDTKYYATGRPSEHSD 94
           E    PHYCHG+  +  + R S+ SD
Sbjct: 755 ELGKQPHYCHGEDYHTESSRGSDLSD 780

>PRP5_YEAST (P21372) Pre-mRNA-processing ATP-dependent RNA helicase PRP5 (EC|
           3.6.1.-)
          Length = 849

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 12/80 (15%)
 Frame = +3

Query: 48  ETPSIMLLAAL--RNIRIPRPT---IYNVVKEMTEMMGYTVRLVR-------ITEMVHDA 191
           E  SI+L   +  R + +P  +   IYN VK   + +  T R  R       IT ++HD 
Sbjct: 574 EKNSILLCTEVLSRGLNVPEVSLVIIYNAVKTFAQYVHTTGRTARGSRSGTAITLLLHDE 633

Query: 192 YYSRLYLAKTGNEEEVISFD 251
                 L+K   +EE+ + D
Sbjct: 634 LSGAYILSKAMRDEEIKALD 653

>RIBB_PHOLE (Q02008) 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP|
           synthase)
          Length = 364

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +1

Query: 166 GLQKWCMMLTTLDCILQRLEMKKRLLVLISSHQMPSTL 279
           GL +W     +L+  +QR++ +  +LV+IS  + P TL
Sbjct: 266 GLSQW-----SLEAAMQRIQTEDGVLVIISQQESPKTL 298

>CISY_PYRFU (Q53554) Citrate synthase (EC 2.3.3.1)|
          Length = 376

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 6/87 (6%)
 Frame = +3

Query: 114 NVVKEMTEMMGYTVRLVRITEMV----HDAYYSRLYLAKTGNEEEVISFDLKPSDA--IN 275
           N  KE+ +  G    ++ I E +    H     R  ++  GN ++     + P +   I 
Sbjct: 66  NFKKELAKSRGLPKEVIEIMEALPKNTHPMGALRTIISYLGNIDDSGDIPVTPEEVYRIG 125

Query: 276 IAFRCKVPIQVNKRIAYNNGLKVIQPK 356
           I+   K+P  V       NGL+ + PK
Sbjct: 126 ISVTAKIPTIVANWYRIKNGLEYVPPK 152

>CLCE_ARATH (Q8GX93) Chloride channel protein CLC-e (AtCLC-e)|
          Length = 710

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +3

Query: 195 YSRLYLAKTGNEEEVISFDLKPSDAINIAFRCKVPIQVNKRIA-YNNGLKVIQ 350
           + RL  AK   +++ + FD +PS  + IA  C V +     +  +NN + +++
Sbjct: 50  FPRLPAAKQETDQDEVGFDQQPSQELAIASACLVGVLTGVSVVLFNNCVHLLR 102

>HIS4_METMA (Q8PWS2) 1-(5-phosphoribosyl)-5-[(5-|
           phosphoribosylamino)methylideneamino]
           imidazole-4-carboxamide isomerase (EC 5.3.1.16)
           (Phosphoribosylformimino-5-aminoimidazole carboxamide
           ribotide isomerase)
          Length = 246

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = -2

Query: 106 VGLGIRMFRRAASSIILGVSMTIMGS 29
           VG GIR F  AAS + +GVS  I+G+
Sbjct: 84  VGGGIRSFEDAASLLEIGVSRIILGT 109

>PRD10_HUMAN (Q9NQV6) PR domain zinc finger protein 10 (PR domain-containing|
           protein 10)
          Length = 1061

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = -1

Query: 98  WNPNVPKGGQ*HNTWCLHDNNGEQKIAP 15
           W P+ P+    H+ WC   NN    + P
Sbjct: 74  WEPDPPRPFDPHDLWCEECNNAHASVCP 101

>G6PD_ANASP (P48992) Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) (G6PD)|
          Length = 509

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -1

Query: 191 SIMHHFCNPHQTYRVSHHFG 132
           +++  +C  HQ YR+ H+ G
Sbjct: 181 AVVQKYCKEHQVYRIDHYLG 200


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,480,101
Number of Sequences: 219361
Number of extensions: 1172940
Number of successful extensions: 3195
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 3131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3194
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 1396778976
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)