Clone Information

BLAST Search Result

Clone Name	baal13o01
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	SF3A1_ARATH (Q8RXF1) Probable splicing factor 3 subunit 1	145	4e-35
2	SF3A1_MOUSE (Q8K4Z5) Splicing factor 3 subunit 1 (SF3a120)	44	3e-04
3	SF3A1_HUMAN (Q15459) Splicing factor 3 subunit 1 (Spliceosome-as...	43	4e-04
4	FOXJ3_HUMAN (Q9UPW0) Forkhead box protein J3	35	0.14
5	HRG_RABIT (Q28640) Histidine-rich glycoprotein precursor (Histid...	35	0.14
6	CREB5_HUMAN (Q02930) cAMP response element-binding protein 5 (CR...	34	0.19
7	CREB5_MOUSE (Q8K1L0) cAMP response element-binding protein 5 (CR...	34	0.19
8	PYGO_DROME (Q9V9W8) Protein pygopus (Protein gammy legs)	33	0.32
9	GLI3_MOUSE (Q61602) Zinc finger protein GLI3	33	0.42
10	SALM_DROME (P39770) Homeotic protein spalt-major	33	0.54
11	SFPQ_MOUSE (Q8VIJ6) Splicing factor, proline- and glutamine-rich...	33	0.54
12	OSA_DROME (Q8IN94) Trithorax group protein osa (Protein eyelid)	33	0.54
13	ROBO4_HUMAN (Q8WZ75) Roundabout homolog 4 precursor (Magic round...	32	0.71
14	ROBO4_MOUSE (Q8C310) Roundabout homolog 4 precursor	32	0.93
15	EMS_DROME (P18488) Homeotic protein empty spiracles	32	1.2
16	CBPY_SCHPO (O13849) Carboxypeptidase Y precursor (EC 3.4.16.5) (...	32	1.2
17	NCOA6_RAT (Q9JLI4) Nuclear receptor coactivator 6 (Amplified in ...	31	1.6
18	RCO1_NEUCR (P78706) Transcriptional repressor rco-1	31	2.1
19	SRC8_CHICK (Q01406) Src substrate protein p85 (p80) (Cortactin)	31	2.1
20	GLI3_PANTR (Q5IS56) Zinc finger protein GLI3	31	2.1
21	GLI3_HUMAN (P10071) Zinc finger protein GLI3	31	2.1
22	RBBP6_HUMAN (Q7Z6E9) Retinoblastoma-binding protein 6 (p53-assoc...	31	2.1
23	RBBP6_MOUSE (P97868) Retinoblastoma-binding protein 6 (p53-assoc...	31	2.1
24	NCOA6_HUMAN (Q14686) Nuclear receptor coactivator 6 (Amplified i...	31	2.1
25	UMP1_ARATH (Q9LKA5) Unknown mitochondrial protein At3g15000	31	2.1
26	YNM4_YEAST (P53919) Hypothetical 54.9 kDa protein in SPC98-TOM70...	30	2.7
27	EXTN_DAUCA (P06599) Extensin precursor	30	2.7
28	RENT1_ARATH (Q9FJR0) Regulator of nonsense transcripts 1 homolog...	30	2.7
29	SNRPA_MOUSE (Q62189) U1 small nuclear ribonucleoprotein A (U1 sn...	30	3.5
30	PALI_YARLI (Q7Z8R5) pH-response regulator protein palI/RIM9	30	3.5
31	HXA3_MOUSE (P02831) Homeobox protein Hox-A3 (Hox-1.5) (MO-10)	30	4.6
32	GLU2_MAIZE (P04706) Glutelin-2 precursor (Zein-gamma) (27 kDa ze...	30	4.6
33	ZC3H6_HUMAN (P61129) Zinc finger CCCH-type domain-containing pro...	30	4.6
34	RSMB_CHICK (Q9PV94) Small nuclear ribonucleoprotein-associated p...	30	4.6
35	FOXJ3_MOUSE (Q8BUR3) Forkhead box protein J3	30	4.6
36	NOTC1_RAT (Q07008) Neurogenic locus notch homolog protein 1 prec...	30	4.6
37	NOTC1_MOUSE (Q01705) Neurogenic locus notch homolog protein 1 pr...	30	4.6
38	WDR33_HUMAN (Q9C0J8) WD-repeat protein 33 (WD-repeat protein WDC...	30	4.6
39	PO6F2_MOUSE (Q8BJI4) POU domain, class 6, transcription factor 2	30	4.6
40	BRO1_YARLI (Q6CGJ5) Vacuolar protein-sorting protein BRO1 (BRO d...	30	4.6
41	RU1C_MOUSE (Q62241) U1 small nuclear ribonucleoprotein C (U1 snR...	29	6.0
42	RU1C_HUMAN (P09234) U1 small nuclear ribonucleoprotein C (U1 snR...	29	6.0
43	RSMB_MOUSE (P27048) Small nuclear ribonucleoprotein-associated p...	29	6.0
44	WASIP_HUMAN (O43516) Wiskott-Aldrich syndrome protein-interactin...	29	6.0
45	ENAM_MOUSE (O55196) Enamelin precursor	29	6.0
46	BRD4_HUMAN (O60885) Bromodomain-containing protein 4 (HUNK1 prot...	29	6.0
47	DAAM2_MOUSE (Q80U19) Disheveled-associated activator of morphoge...	29	6.0
48	CCNK_MOUSE (O88874) Cyclin-K	29	6.0
49	WASIP_RAT (Q6IN36) Wiskott-Aldrich syndrome protein-interacting ...	29	6.0
50	VND_DROME (P22808) Homeobox protein vnd (Protein ventral nervous...	29	7.8
51	DOCK1_HUMAN (Q14185) Dedicator of cytokinesis protein 1 (180 kDa...	29	7.8
52	LCP2_HUMAN (Q13094) Lymphocyte cytosolic protein 2 (SH2 domain-c...	29	7.8
53	CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit...	29	7.8
54	CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit...	29	7.8
55	BRD4_MOUSE (Q9ESU6) Bromodomain-containing protein 4 (Mitotic ch...	29	7.8
56	SMAD4_RAT (O70437) Mothers against decapentaplegic homolog 4 (SM...	29	7.8
57	SMAD4_PIG (Q9GKQ9) Mothers against decapentaplegic homolog 4 (SM...	29	7.8
58	SMAD4_HUMAN (Q13485) Mothers against decapentaplegic homolog 4 (...	29	7.8
59	PPSA_ECOLI (P23538) Phosphoenolpyruvate synthase (EC 2.7.9.2) (P...	29	7.8
60	RPB1_CAEEL (P16356) DNA-directed RNA polymerase II largest subun...	29	7.8
61	EXTN_SORBI (P24152) Extensin precursor (Proline-rich glycoprotein)	29	7.8
62	AKT1_ORYSA (Q8VYX2) Potassium channel AKT1 (OsAKT1)	29	7.8
63	FOR3_SCHPO (O94532) Formin-3	29	7.8

>SF3A1_ARATH (Q8RXF1) Probable splicing factor 3 subunit 1|
          Length = 785

 Score =  145 bits (367), Expect = 4e-35
 Identities = 98/201 (48%), Positives = 111/201 (55%), Gaps = 41/201 (20%)
 Frame = +3

Query: 6    AXIKETTLAPDDEISRNIIGLARTRPDIFGTTEEEVSNAVKAEIEKKKDEQPKQVIWDGH 185
            A I+ETTLA DDEI++NI+GLAR RPDIFGTTEEEVSNAVKAEIEKKKDEQPKQVIWDGH
Sbjct: 448  AKIRETTLAQDDEIAKNIVGLARLRPDIFGTTEEEVSNAVKAEIEKKKDEQPKQVIWDGH 507

Query: 186  SGSIGWTATQAMS--IGGEEQGDXXXXXXXXXXXXXXXXXXX-------------XLSLV 320
            +GSIG TA QA+S    GEEQGD                                 L+L 
Sbjct: 508  TGSIGRTANQALSQNANGEEQGDGVYGDPNSFPGPAALPPPRPGVPIVRPLPPPPNLAL- 566

Query: 321  NVPRFTPN------------PM--PYHVQ-------PPHH---MQGVPPHMMSNMHPPLP 428
            N+PR  P+            PM  P H Q       PP H   M   PP M   MH P P
Sbjct: 567  NLPRPPPSAQYPGAPRPLGVPMMQPMHQQHQLTMPGPPGHPQMMMNRPPQMQPGMHVPPP 626

Query: 429  PGQQ--HMIRMSGPMGHMPNS 485
            PG Q  H +++  P G +P S
Sbjct: 627  PGSQFAHHMQIPRPYGQLPPS 647

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>SF3A1_MOUSE (Q8K4Z5) Splicing factor 3 subunit 1 (SF3a120)|
          Length = 791

 Score = 43.5 bits (101), Expect = 3e-04
 Identities = 37/142 (26%), Positives = 53/142 (37%), Gaps = 1/142 (0%)
 Frame = +3

Query: 30  APDDEISRNIIGLARTRPDIFGTTEEEVSNAVKAEIEKKKDEQPKQVIWDGHSGSIGWTA 209
           AP  +I  ++  LA  R DIFG  E  +   +  E  +K +E+   V WDGHSGS+  T 
Sbjct: 455 APGLDIESSLKQLAERRTDIFGVEETAIGKKIGEEEIQKPEEK---VTWDGHSGSMARTQ 511

Query: 210 TQAM-SIGGEEQGDXXXXXXXXXXXXXXXXXXXXLSLVNVPRFTPNPMPYHVQPPHHMQG 386
             A  +I  +EQ +                         +    PN +P    PP     
Sbjct: 512 QAAQANITLQEQIEAIHKAKGLVPEDDTKE--------KIGPSKPNEIPQQPPPPSSATN 563

Query: 387 VPPHMMSNMHPPLPPGQQHMIR 452
           +P         P PP     +R
Sbjct: 564 IPSSAPPITSVPRPPAMPPPVR 585

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>SF3A1_HUMAN (Q15459) Splicing factor 3 subunit 1 (Spliceosome-associated|
           protein 114) (SAP 114) (SF3a120)
          Length = 793

 Score = 43.1 bits (100), Expect = 4e-04
 Identities = 38/138 (27%), Positives = 54/138 (39%), Gaps = 4/138 (2%)
 Frame = +3

Query: 30  APDDEISRNIIGLARTRPDIFGTTEEEVSNAVKAEIEKKKDEQPKQVIWDGHSGSIGWTA 209
           AP  +I  ++  LA  R DIFG  E  +   +  E  +K +E+   V WDGHSGS+  T 
Sbjct: 457 APGLDIESSLKQLAERRTDIFGVEETAIGKKIGEEEIQKPEEK---VTWDGHSGSMARTQ 513

Query: 210 TQAM-SIGGEEQGDXXXXXXXXXXXXXXXXXXXXLSLVNVPRFTPNPMPYHVQPPHHMQG 386
             A  +I  +EQ +                         +    PN +P    PP     
Sbjct: 514 QAAQANITLQEQIEAIHKAKGLVPEDDTKE--------KIGPSKPNEIPQQPPPPSSATN 565

Query: 387 VP---PHMMSNMHPPLPP 431
           +P   P + S   PP  P
Sbjct: 566 IPSSAPPITSVPRPPTMP 583

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>FOXJ3_HUMAN (Q9UPW0) Forkhead box protein J3|
          Length = 622

 Score = 34.7 bits (78), Expect = 0.14
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = +3

Query: 327 PRFTPNPMPYHVQPPHHMQGVPPHMMSNMHPPLPPGQQHMIRMSGPMGHMPN 482
           P+  P P P+   PPH   G+P H   + HP   P Q   ++   P    P+
Sbjct: 373 PQMHPQPSPH---PPHRPHGLPQHPQRSPHPAPHPQQHSQLQSPHPQHPSPH 421

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>HRG_RABIT (Q28640) Histidine-rich glycoprotein precursor|
           (Histidine-proline-rich glycoprotein) (HPRG) (Fragment)
          Length = 526

 Score = 34.7 bits (78), Expect = 0.14
 Identities = 22/53 (41%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = +3

Query: 327 PRFTPNPMPYHVQPPHHMQGVPPHMMSNMHPPL-PPGQQHMIRMSGPMGHMPN 482
           PR  P+  P H  PPH   G PPH     HPP  PP   H      P GH P+
Sbjct: 360 PRHPPHGPPPHGHPPH---GPPPH----GHPPHGPPPHGHPPHGPPPHGHPPH 405



 Score = 32.0 bits (71), Expect = 0.93
 Identities = 21/53 (39%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
 Frame = +3

Query: 339 PNPMPYHVQPPHH-MQGVPPHMMSNMHPPL-PPGQQHMIRMSGPMGHMPNSIP 491
           P+  P H  PP H   G PPH     HPP  PP   H      P GH P+  P
Sbjct: 350 PHGHPPHGPPPRHPPHGPPPH----GHPPHGPPPHGHPPHGPPPHGHPPHGPP 398

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>CREB5_HUMAN (Q02930) cAMP response element-binding protein 5 (CRE-BPa)|
          Length = 508

 Score = 34.3 bits (77), Expect = 0.19
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 6/47 (12%)
 Frame = +3

Query: 327 PRFTPNPMPYHVQP-PHH-----MQGVPPHMMSNMHPPLPPGQQHMI 449
           P   P+P P+H Q  PHH     +   P H  ++ HPPL  G Q  +
Sbjct: 297 PAHHPHPQPHHQQNHPHHHSHSHLHAHPAHHQTSPHPPLHTGNQAQV 343

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>CREB5_MOUSE (Q8K1L0) cAMP response element-binding protein 5 (CRE-BPa)|
           (Fragment)
          Length = 353

 Score = 34.3 bits (77), Expect = 0.19
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 6/47 (12%)
 Frame = +3

Query: 327 PRFTPNPMPYHVQP-PHH-----MQGVPPHMMSNMHPPLPPGQQHMI 449
           P   P+P P+H Q  PHH     +   P H  ++ HPPL  G Q  +
Sbjct: 142 PAHHPHPQPHHQQNHPHHHSHSHLHAHPAHHQTSPHPPLHTGNQAQV 188

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>PYGO_DROME (Q9V9W8) Protein pygopus (Protein gammy legs)|
          Length = 815

 Score = 33.5 bits (75), Expect = 0.32
 Identities = 21/53 (39%), Positives = 24/53 (45%), Gaps = 8/53 (15%)
 Frame = +3

Query: 339 PNPMPYHVQPPHHMQGVPPHMMS--NMH------PPLPPGQQHMIRMSGPMGH 473
           PN M +   P HH  G PPHMM    MH      PP   G  +   M GP G+
Sbjct: 580 PNMMNHPHHPHHHPGGPPPHMMGGPGMHGGPAGMPPHMGGGPNPHMMGGPHGN 632

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>GLI3_MOUSE (Q61602) Zinc finger protein GLI3|
          Length = 1596

 Score = 33.1 bits (74), Expect = 0.42
 Identities = 36/165 (21%), Positives = 61/165 (36%), Gaps = 8/165 (4%)
 Frame = +3

Query: 21  TTLAPDDEISRNIIGLARTRPDIFGTTEEEVSNAVKAEIEKKKDEQPKQVIWDGHSGSIG 200
           ++ A + + + N IG   TR D+          AV +     +DE P Q+       +I 
Sbjct: 7   SSTATERKKAENSIGKCPTRTDVS-------EKAVASSTTSNEDESPGQIYHRERRNAI- 58

Query: 201 WTATQAMSIGG----EEQGDXXXXXXXXXXXXXXXXXXXXLSLVNVPR----FTPNPMPY 356
               Q  S+ G     E+                      L+  ++P     F  +P   
Sbjct: 59  --TMQPQSVQGLNKISEEPSTSSDERASLIKKEIHGSLPHLAEPSLPYRGTVFAMDPRNG 116

Query: 357 HVQPPHHMQGVPPHMMSNMHPPLPPGQQHMIRMSGPMGHMPNSIP 491
           +++P +H    PPH+    HPP+P   +H     G   + P+ IP
Sbjct: 117 YMEPHYH----PPHLFPAFHPPVPIDARH---HEGRYHYDPSPIP 154

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>SALM_DROME (P39770) Homeotic protein spalt-major|
          Length = 1365

 Score = 32.7 bits (73), Expect = 0.54
 Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 9/60 (15%)
 Frame = +3

Query: 327 PRFTPNPMPYHVQPPHHM---QGVPPHMM-----SNMHPPLPPG-QQHMIRMSGPMGHMP 479
           PR TP+P   H  P HH     G PP +      + MHP   PG Q H+  +  P G +P
Sbjct: 660 PRRTPSPSSEHRSPHHHRHSHMGYPPVVQPIQPAALMHPQSSPGSQSHLDHLPTP-GQLP 718

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>SFPQ_MOUSE (Q8VIJ6) Splicing factor, proline- and glutamine-rich|
           (Polypyrimidine tract-binding protein-associated
           splicing factor) (PTB-associated splicing factor) (PSF)
           (DNA-binding p52/p100 complex, 100 kDa subunit)
          Length = 699

 Score = 32.7 bits (73), Expect = 0.54
 Identities = 16/42 (38%), Positives = 19/42 (45%)
 Frame = +3

Query: 339 PNPMPYHVQPPHHMQGVPPHMMSNMHPPLPPGQQHMIRMSGP 464
           P   P   QPP H Q  PPH   +  PP PP +   +   GP
Sbjct: 71  PPQQPPPQQPPPHQQP-PPHQPPHQQPPPPPQESKPVVPQGP 111

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>OSA_DROME (Q8IN94) Trithorax group protein osa (Protein eyelid)|
          Length = 2716

 Score = 32.7 bits (73), Expect = 0.54
 Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +3

Query: 366 PPHHMQGVPPHMMSNMHPPL-PPGQQHMIRMSGPMG 470
           PPHHM   PPH  +NM PP   P Q  M++   P G
Sbjct: 809 PPHHMG--PPHGPTNMGPPTSTPPQSQMLQGGQPQG 842

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>ROBO4_HUMAN (Q8WZ75) Roundabout homolog 4 precursor (Magic roundabout)|
          Length = 1007

 Score = 32.3 bits (72), Expect = 0.71
 Identities = 15/35 (42%), Positives = 23/35 (65%)
 Frame = +2

Query: 293 PASPTTFLGQCSPIYTQSNALSCPTPSSYARSSTA 397
           PA+P   L  CSP   Q+++LS P+P+S   SS++
Sbjct: 747 PAAPIPILSPCSPPSPQASSLSGPSPASSRLSSSS 781

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>ROBO4_MOUSE (Q8C310) Roundabout homolog 4 precursor|
          Length = 1012

 Score = 32.0 bits (71), Expect = 0.93
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = +2

Query: 293 PASPTTFLGQCSPIYTQSNALSCPTPSSYARSSTA 397
           PA+P + L    P   Q++ LSCP+PSS   SS++
Sbjct: 754 PAAPLSVLNSSRPSSPQASFLSCPSPSSSNLSSSS 788

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>EMS_DROME (P18488) Homeotic protein empty spiracles|
          Length = 497

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 5/57 (8%)
 Frame = +3

Query: 321 NVPRFTPNPMPYHV-----QPPHHMQGVPPHMMSNMHPPLPPGQQHMIRMSGPMGHM 476
           NVP   P   P  +      PPHH+   P H +   HP     QQ  ++   P  H+
Sbjct: 59  NVPGSPPQTPPATLTLIPGSPPHHLMAPPAHGLPYPHPHAQQQQQQHLQAPHPHPHL 115

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>CBPY_SCHPO (O13849) Carboxypeptidase Y precursor (EC 3.4.16.5) (CPY)|
          Length = 1002

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
 Frame = +3

Query: 345 PMPYHVQPPHHMQGVPPHMMSNMHPPLPPGQQHMI-RMSGPMGH 473
           P P H +P  HM   P H     H P PP + H +    GP  H
Sbjct: 313 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPFKHHELEEHEGPEHH 356



 Score = 28.9 bits (63), Expect = 7.8
 Identities = 16/45 (35%), Positives = 17/45 (37%)
 Frame = +3

Query: 345 PMPYHVQPPHHMQGVPPHMMSNMHPPLPPGQQHMIRMSGPMGHMP 479
           P P H +P  HM   P H     H P PP          P  HMP
Sbjct: 300 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHE------PGEHMP 338



 Score = 28.9 bits (63), Expect = 7.8
 Identities = 16/45 (35%), Positives = 17/45 (37%)
 Frame = +3

Query: 345 PMPYHVQPPHHMQGVPPHMMSNMHPPLPPGQQHMIRMSGPMGHMP 479
           P P H +P  HM   P H     H P PP          P  HMP
Sbjct: 287 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHE------PGEHMP 325



 Score = 28.9 bits (63), Expect = 7.8
 Identities = 16/45 (35%), Positives = 17/45 (37%)
 Frame = +3

Query: 345 PMPYHVQPPHHMQGVPPHMMSNMHPPLPPGQQHMIRMSGPMGHMP 479
           P P H +P  HM   P H     H P PP          P  HMP
Sbjct: 274 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHE------PGEHMP 312



 Score = 28.9 bits (63), Expect = 7.8
 Identities = 16/45 (35%), Positives = 17/45 (37%)
 Frame = +3

Query: 345 PMPYHVQPPHHMQGVPPHMMSNMHPPLPPGQQHMIRMSGPMGHMP 479
           P P H +P  HM   P H     H P PP          P  HMP
Sbjct: 261 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHE------PGEHMP 299



 Score = 28.9 bits (63), Expect = 7.8
 Identities = 16/45 (35%), Positives = 17/45 (37%)
 Frame = +3

Query: 345 PMPYHVQPPHHMQGVPPHMMSNMHPPLPPGQQHMIRMSGPMGHMP 479
           P P H +P  HM   P H     H P PP          P  HMP
Sbjct: 248 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHE------PGEHMP 286



 Score = 28.9 bits (63), Expect = 7.8
 Identities = 16/45 (35%), Positives = 17/45 (37%)
 Frame = +3

Query: 345 PMPYHVQPPHHMQGVPPHMMSNMHPPLPPGQQHMIRMSGPMGHMP 479
           P P H +P  HM   P H     H P PP          P  HMP
Sbjct: 235 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHE------PGEHMP 273



 Score = 28.9 bits (63), Expect = 7.8
 Identities = 16/45 (35%), Positives = 17/45 (37%)
 Frame = +3

Query: 345 PMPYHVQPPHHMQGVPPHMMSNMHPPLPPGQQHMIRMSGPMGHMP 479
           P P H +P  HM   P H     H P PP          P  HMP
Sbjct: 222 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHE------PGEHMP 260

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>NCOA6_RAT (Q9JLI4) Nuclear receptor coactivator 6 (Amplified in breast cancer|
           protein 3) (Cancer-amplified transcriptional coactivator
           ASC-2) (Activating signal cointegrator 2) (ASC-2)
           (Peroxisome proliferator-activated receptor-interacting
           protein) (PPA
          Length = 418

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
 Frame = +3

Query: 324 VPRFTPNPMPYHVQPPHH--MQGVPPHMMSNMHPPLPPGQQHMIRMSGPMGHMPNSIP 491
           +P F+  P  Y  QP     +Q +PP +M ++ PP  P QQ       P   +P   P
Sbjct: 250 LPDFSNRPPGYPTQPVEQRPLQQMPPQLMQHVAPPPQPPQQQ------PQPQLPQQQP 301

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>RCO1_NEUCR (P78706) Transcriptional repressor rco-1|
          Length = 604

 Score = 30.8 bits (68), Expect = 2.1
 Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
 Frame = +3

Query: 339 PNPMPYHVQPPHHMQGVPPHMMSNMHPPLPPGQQHMIRM--SGPMGHMPNSIP 491
           P P P   + P HM   PP +     PP PP QQ   +    GP G  P + P
Sbjct: 131 PPPPPQQQEQPAHMPA-PPGLQGPPPPPPPPSQQPPFQQQYQGPQG--PGNFP 180

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>SRC8_CHICK (Q01406) Src substrate protein p85 (p80) (Cortactin)|
          Length = 563

 Score = 30.8 bits (68), Expect = 2.1
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
 Frame = +2

Query: 293 PASPTTFLGQ----CSPIYTQSNALSCPTPSSYARSSTAYDVQYASTSATRSTAHD 448
           P SPTT   +     SP+Y   +A+S    S+Y  SST Y  ++   S  ++T  D
Sbjct: 412 PPSPTTQPAEPKTPSSPVY--QDAVSYDAESAYKNSSTTYSAEHEPESGYKTTGSD 465

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>GLI3_PANTR (Q5IS56) Zinc finger protein GLI3|
          Length = 1580

 Score = 30.8 bits (68), Expect = 2.1
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = +3

Query: 333 FTPNPMPYHVQPPHHMQGVPPHMMSNMHPPLPPGQQHMIRMSGPMGHMPNSIP 491
           F  +P   +++P +H    PPH+    HPP+P   +H     G   + P+ IP
Sbjct: 109 FAMDPRNGYMEPHYH----PPHLFPAFHPPVPIDARH---HEGRYHYDPSPIP 154

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>GLI3_HUMAN (P10071) Zinc finger protein GLI3|
          Length = 1580

 Score = 30.8 bits (68), Expect = 2.1
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = +3

Query: 333 FTPNPMPYHVQPPHHMQGVPPHMMSNMHPPLPPGQQHMIRMSGPMGHMPNSIP 491
           F  +P   +++P +H    PPH+    HPP+P   +H     G   + P+ IP
Sbjct: 109 FAMDPRNGYMEPHYH----PPHLFPAFHPPVPIDARH---HEGRYHYDPSPIP 154

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>RBBP6_HUMAN (Q7Z6E9) Retinoblastoma-binding protein 6 (p53-associated cellular|
           protein of testis) (Proliferation potential-related
           protein) (Protein P2P-R) (Retinoblastoma-binding Q
           protein 1) (Protein RBQ-1)
          Length = 1792

 Score = 30.8 bits (68), Expect = 2.1
 Identities = 20/46 (43%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
 Frame = +3

Query: 312 SLVNVPRFTPNPMPYHVQPPHHM----QGVPPHMMSNMHPPLPPGQ 437
           SL   P F P P P    PP H      GVPP   S   P  PPGQ
Sbjct: 549 SLPATPVFVPVPPPPLYPPPPHTLPLPPGVPPPQFS---PQFPPGQ 591

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>RBBP6_MOUSE (P97868) Retinoblastoma-binding protein 6 (p53-associated cellular|
           protein of testis) (Proliferation potential-related
           protein) (Protein P2P-R)
          Length = 1790

 Score = 30.8 bits (68), Expect = 2.1
 Identities = 20/46 (43%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
 Frame = +3

Query: 312 SLVNVPRFTPNPMPYHVQPPHHM----QGVPPHMMSNMHPPLPPGQ 437
           SL   P F P P P    PP H      GVPP   S   P  PPGQ
Sbjct: 550 SLPATPVFVPVPPPPLYPPPPHTLPLPPGVPPPQFS---PQFPPGQ 592

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>NCOA6_HUMAN (Q14686) Nuclear receptor coactivator 6 (Amplified in breast cancer|
            protein 3) (Cancer-amplified transcriptional coactivator
            ASC-2) (Activating signal cointegrator 2) (ASC-2)
            (Peroxisome proliferator-activated receptor-interacting
            protein) (P
          Length = 2063

 Score = 30.8 bits (68), Expect = 2.1
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +3

Query: 324  VPRFTPNPMPYHVQPPHH--MQGVPPHMMSNMHPPLPPGQQ 440
            +P F+  P  Y  QP     +Q +PP +M ++ PP  P QQ
Sbjct: 963  LPEFSNRPPGYPSQPVEQRPLQQMPPQLMQHVAPPPQPPQQ 1003

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>UMP1_ARATH (Q9LKA5) Unknown mitochondrial protein At3g15000|
          Length = 395

 Score = 30.8 bits (68), Expect = 2.1
 Identities = 21/54 (38%), Positives = 23/54 (42%), Gaps = 7/54 (12%)
 Frame = +3

Query: 345 PMPYHV----QPPHHMQGV---PPHMMSNMHPPLPPGQQHMIRMSGPMGHMPNS 485
           P P H+     PP HM G    PPHM  N  PP PP      R   P G  P +
Sbjct: 252 PPPPHIGGSAPPPPHMGGSAPPPPHMGQNYGPP-PPNNMGGPRHPPPYGAPPQN 304

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>YNM4_YEAST (P53919) Hypothetical 54.9 kDa protein in SPC98-TOM70 intergenic|
           region
          Length = 492

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 19/51 (37%), Positives = 22/51 (43%), Gaps = 5/51 (9%)
 Frame = +3

Query: 342 NPMPYHVQPPHHMQGVPPHMMSNM-----HPPLPPGQQHMIRMSGPMGHMP 479
           N +PY   PP +    PP   S M      PPLP G   M +M  PM   P
Sbjct: 400 NTVPYGSLPPAYNNMSPPTQQSFMPMTQSQPPLPYGVPPMNQMQNPMYIQP 450

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>EXTN_DAUCA (P06599) Extensin precursor|
          Length = 306

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 15/51 (29%), Positives = 21/51 (41%)
 Frame = +3

Query: 327 PRFTPNPMPYHVQPPHHMQGVPPHMMSNMHPPLPPGQQHMIRMSGPMGHMP 479
           P  +P P  +   PP+H +  PP      H P PP   +  +   P  H P
Sbjct: 42  PEHSPPPPEHSPPPPYHYESPPP----PKHSPPPPTPVYKYKSPPPPMHSP 88

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>RENT1_ARATH (Q9FJR0) Regulator of nonsense transcripts 1 homolog (EC 3.6.1.-)|
            (ATP-dependent helicase UPF1)
          Length = 1254

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +3

Query: 333  FTPNPMPYHVQPPHHMQGVP-PHMMSNMHPPLPPGQQHMIRMSGPMGHMPNS 485
            + P+  P   +P  H  G P P +  +  P  PP Q + I   GP+G +P++
Sbjct: 979  YLPSGPPNGARPGLHPAGYPIPRVPLSPFPGGPPSQPYAIPTRGPVGAVPHA 1030

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>SNRPA_MOUSE (Q62189) U1 small nuclear ribonucleoprotein A (U1 snRNP protein A)|
           (U1A protein) (U1-A)
          Length = 286

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 22/52 (42%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
 Frame = +3

Query: 345 PMPYHVQPPHHMQGVPPHM-MSNMHPP--LPPGQQHMIRMSGPMGHMPNSIP 491
           PMP   +  HHM G PP+M    M PP  L PGQ     M  P   MP  +P
Sbjct: 150 PMPQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPGAMP-PQQLMPGQMP 200

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>PALI_YARLI (Q7Z8R5) pH-response regulator protein palI/RIM9|
          Length = 728

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
 Frame = +3

Query: 330 RFTPNPMPYHV----QPPHHMQGVPPHMMSNMHPPLPPGQ 437
           R+ P+P  Y      +PP+  +GVPP   SN   P PPGQ
Sbjct: 294 RYGPSPDRYDQGGPGRPPNGSRGVPPRRPSN--GPTPPGQ 331

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>HXA3_MOUSE (P02831) Homeobox protein Hox-A3 (Hox-1.5) (MO-10)|
          Length = 443

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
 Frame = +3

Query: 312 SLVNVPRFTPNPMPYHVQPPHHMQGVPPHM----MSNMHPPLPPGQQHMIRMSGPMG 470
           SLVN   + P   P   +PP    G+PP      + +  PP PP +++    SG  G
Sbjct: 283 SLVNSVPYEPQSPPPFSKPPQGAYGLPPASYPAPLPSCAPPPPPQKRYTAAGSGAGG 339

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>GLU2_MAIZE (P04706) Glutelin-2 precursor (Zein-gamma) (27 kDa zein)|
           (Alcohol-soluble reduced glutelin) (ASG) (Zein ZC2)
          Length = 223

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 17/58 (29%), Positives = 25/58 (43%)
 Frame = +3

Query: 318 VNVPRFTPNPMPYHVQPPHHMQGVPPHMMSNMHPPLPPGQQHMIRMSGPMGHMPNSIP 491
           V++P     P P H+ PP H+   P H+   +H P P      + +  P  H P   P
Sbjct: 34  VHLPPPVHLPPPVHLPPPVHLP-PPVHLPPPVHLPPPVHVPPPVHLPPPPCHYPTQPP 90



 Score = 29.3 bits (64), Expect = 6.0
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = +3

Query: 318 VNVPRFTPNPMPYHVQPPHHMQGVPPHMMSNMHPPLPPGQQH 443
           V++P     P P HV PP H+   P H  +    P P  Q H
Sbjct: 58  VHLPPPVHLPPPVHVPPPVHLPPPPCHYPTQPPRPQPHPQPH 99

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>ZC3H6_HUMAN (P61129) Zinc finger CCCH-type domain-containing protein 6|
          Length = 1189

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +3

Query: 321 NVPRFTPNPMPYHVQPPHHMQGVPPHMMSNMHPPLPPGQQHMI 449
           N+ +   +P+ +   P HH    PP +     PPLPPG   ++
Sbjct: 484 NMSQGHSSPVMHPGSPGHHPCAGPPGLPVPQSPPLPPGPPEIV 526

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>RSMB_CHICK (Q9PV94) Small nuclear ribonucleoprotein-associated protein B'|
           (snRNP-B') (Sm protein B') (Sm-B') (SmB') (snRPB')
          Length = 240

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 19/49 (38%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
 Frame = +3

Query: 339 PNPMPYHVQPPHHMQGVPPHMMSNMHPP--LPPGQQHMIRMSGPMGHMP 479
           P P      PP  M G PP M   M PP  +PPG+        PMG  P
Sbjct: 175 PPPPMSRGAPPPGMMGPPPGMRPPMGPPMGMPPGR------GAPMGMPP 217

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>FOXJ3_MOUSE (Q8BUR3) Forkhead box protein J3|
          Length = 623

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = +3

Query: 327 PRFTPNPMPYHVQPPHHMQGVPPHMMSNMHPPLPPGQQH 443
           P+  P P P+    PH   G+P H     H P P  QQH
Sbjct: 374 PQMHPQPSPH---TPHRPHGLPQHPQRPQH-PAPHPQQH 408

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>NOTC1_RAT (Q07008) Neurogenic locus notch homolog protein 1 precursor (Notch 1)|
            [Contains: Notch 1 extracellular truncation; Notch 1
            intracellular domain]
          Length = 2531

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
 Frame = +3

Query: 312  SLVNVPRFTPNPMPYHVQPPHHMQGVPPHMMSNMHPP------LPPGQQHMIRMSGPMGH 473
            S  +V    P+ +P H   P   Q +P  + S+M PP      L P  QH    S P+ +
Sbjct: 2414 SQADVQPLGPSSLPVHTILPQESQALPTSLPSSMVPPMTTTQFLTPPSQHSY-SSSPVDN 2472

Query: 474  MPN 482
             P+
Sbjct: 2473 TPS 2475

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>NOTC1_MOUSE (Q01705) Neurogenic locus notch homolog protein 1 precursor (Notch 1)|
            (Motch A) (mT14) (p300) [Contains: Notch 1 extracellular
            truncation; Notch 1 intracellular domain]
          Length = 2531

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
 Frame = +3

Query: 312  SLVNVPRFTPNPMPYHVQPPHHMQGVPPHMMSNMHPP------LPPGQQHMIRMSGPMGH 473
            S  +V    P+ +P H   P   Q +P  + S+M PP      L P  QH    S P+ +
Sbjct: 2414 SQADVQPLGPSSLPVHTILPQESQALPTSLPSSMVPPMTTTQFLTPPSQHSY-SSSPVDN 2472

Query: 474  MPN 482
             P+
Sbjct: 2473 TPS 2475

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>WDR33_HUMAN (Q9C0J8) WD-repeat protein 33 (WD-repeat protein WDC146)|
          Length = 1336

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 17/43 (39%), Positives = 19/43 (44%)
 Frame = +3

Query: 348 MPYHVQPPHHMQGVPPHMMSNMHPPLPPGQQHMIRMSGPMGHM 476
           +P   Q PH  Q +P     NM    PPG Q   R  GP G M
Sbjct: 597 IPQGFQQPHPSQQMP----MNMAQMGPPGPQGQFRPPGPQGQM 635

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>PO6F2_MOUSE (Q8BJI4) POU domain, class 6, transcription factor 2|
          Length = 691

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 17/55 (30%), Positives = 21/55 (38%), Gaps = 4/55 (7%)
 Frame = +3

Query: 339 PNPMPYHVQP----PHHMQGVPPHMMSNMHPPLPPGQQHMIRMSGPMGHMPNSIP 491
           P P   H QP    P   Q  PPH        LP     + + + P  H P+S P
Sbjct: 201 PPPTSQHPQPASQAPPQSQPTPPHQPPPASQQLPAPPAQLEQATQPQQHQPHSHP 255

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>BRO1_YARLI (Q6CGJ5) Vacuolar protein-sorting protein BRO1 (BRO|
           domain-containing protein 1)
          Length = 867

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +3

Query: 333 FTPNPMPYHVQPPHHMQ-GVPP-HMMSNMHPPLPP 431
           + PN  P+  QPP H Q G PP H     +PP PP
Sbjct: 821 YGPNS-PFMQQPPQHQQYGQPPHHQQYGQNPPPPP 854

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>RU1C_MOUSE (Q62241) U1 small nuclear ribonucleoprotein C (U1 snRNP protein C)|
           (U1C protein) (U1-C)
          Length = 159

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
 Frame = +3

Query: 312 SLVNVPRFTPNPMPYHVQPPHHMQGVPPHMMSNMHPPLPPGQQHMIRMSG---PM-GHMP 479
           +++  P   P P    + P  HM G  P MM  M PP PPG   +    G   PM GHMP
Sbjct: 75  AMIPPPPSLPGPPRPGMMPAPHMGG--PPMMPMMGPP-PPGMMPVGPAPGMRPPMGGHMP 131

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>RU1C_HUMAN (P09234) U1 small nuclear ribonucleoprotein C (U1 snRNP protein C)|
           (U1C protein) (U1-C)
          Length = 159

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
 Frame = +3

Query: 312 SLVNVPRFTPNPMPYHVQPPHHMQGVPPHMMSNMHPPLPPGQQHMIRMSG---PM-GHMP 479
           +++  P   P P    + P  HM G  P MM  M PP PPG   +    G   PM GHMP
Sbjct: 75  AMIPPPPSLPGPPRPGMMPAPHMGG--PPMMPMMGPP-PPGMMPVGPAPGMRPPMGGHMP 131

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>RSMB_MOUSE (P27048) Small nuclear ribonucleoprotein-associated protein B|
           (snRNP-B) (Sm protein B) (Sm-B) (SmB)
          Length = 231

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 18/44 (40%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
 Frame = +3

Query: 339 PNPMPYHVQPPHHMQGVPPHMMSNMHPP--LPPGQQHMIRMSGP 464
           P P      PP  M G PP M   M PP  LPPG+   + M  P
Sbjct: 175 PPPPMGRGAPPPGMMGPPPGMRPPMGPPMGLPPGRGTPMGMPPP 218

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>WASIP_HUMAN (O43516) Wiskott-Aldrich syndrome protein-interacting protein|
           (WASP-interacting protein) (PRPL-2 protein)
          Length = 503

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 16/51 (31%), Positives = 20/51 (39%)
 Frame = +3

Query: 339 PNPMPYHVQPPHHMQGVPPHMMSNMHPPLPPGQQHMIRMSGPMGHMPNSIP 491
           P P P   +P  H + VPP    N  PP+P   +       P    P S P
Sbjct: 266 PPPPPVGNRPSIHREAVPPPPPQNNKPPVPSTPRPSASSQAPPPPPPPSRP 316

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>ENAM_MOUSE (O55196) Enamelin precursor|
          Length = 1274

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 5/62 (8%)
 Frame = +3

Query: 312 SLVNVPRFTP-----NPMPYHVQPPHHMQGVPPHMMSNMHPPLPPGQQHMIRMSGPMGHM 476
           + +N P   P     N MP    PPH     PP+ M    PP+P G Q       PM + 
Sbjct: 65  NFMNAPPMMPMGPYGNGMP---MPPHMPPQYPPYQMPMWPPPVPNGWQ-----QPPMPNF 116

Query: 477 PN 482
           P+
Sbjct: 117 PS 118

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>BRD4_HUMAN (O60885) Bromodomain-containing protein 4 (HUNK1 protein)|
          Length = 1362

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 13/42 (30%), Positives = 16/42 (38%)
 Frame = +3

Query: 339 PNPMPYHVQPPHHMQGVPPHMMSNMHPPLPPGQQHMIRMSGP 464
           P P+P    PP      PP       PP PP    M + + P
Sbjct: 750 PAPVPQQPPPPPQQPPPPPPPQQQQQPPPPPPPPSMPQQAAP 791

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>DAAM2_MOUSE (Q80U19) Disheveled-associated activator of morphogenesis 2|
          Length = 1068

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 16/49 (32%), Positives = 20/49 (40%)
 Frame = +3

Query: 339 PNPMPYHVQPPHHMQGVPPHMMSNMHPPLPPGQQHMIRMSGPMGHMPNS 485
           P P+P+   PP     +PP       PP+PPG         P  H P S
Sbjct: 544 PPPLPFDSCPPPPAPPLPPG-----GPPIPPGAPPCFSSGPPPSHDPFS 587

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>CCNK_MOUSE (O88874) Cyclin-K|
          Length = 554

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 19/54 (35%), Positives = 22/54 (40%), Gaps = 3/54 (5%)
 Frame = +3

Query: 327 PRFTPNPM---PYHVQPPHHMQGVPPHMMSNMHPPLPPGQQHMIRMSGPMGHMP 479
           P F P P    P H  PPH   G+     S   P +PPG Q  +    P   MP
Sbjct: 489 PNFPPPPPRLPPTHAVPPHPPPGLGLPPASYPPPAVPPGGQPPVPPPIPPPGMP 542

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>WASIP_RAT (Q6IN36) Wiskott-Aldrich syndrome protein-interacting protein|
           (WASP-interacting protein)
          Length = 487

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +3

Query: 339 PNPMPYHVQPPHHMQGVPPHMMSNMHPPLP 428
           P P P   +P  H + VPP    N  PP+P
Sbjct: 253 PPPPPVGNRPSMHREAVPPPPSQNSKPPVP 282

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>VND_DROME (P22808) Homeobox protein vnd (Protein ventral nervous system|
           defective) (Homeobox protein NK-2)
          Length = 723

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = +3

Query: 357 HVQPPHHMQGVPPHMMSNMHPPLPPGQQHMIRMSGPM 467
           H  PP H Q   PH   + HP L   QQH  +   P+
Sbjct: 287 HHAPPSHPQQQHPHHQQHHHPHLLLPQQHHQQAVAPL 323

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>DOCK1_HUMAN (Q14185) Dedicator of cytokinesis protein 1 (180 kDa protein|
            downstream of CRK) (DOCK180)
          Length = 1865

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 336  TPNPMPYHVQPPHHMQGVPPHMMSNMHPPLPP 431
            +P P P    PP H + +PP + S   PP PP
Sbjct: 1823 SPTPPP----PPPHQRHLPPPLPSKTPPPPPP 1850

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>LCP2_HUMAN (Q13094) Lymphocyte cytosolic protein 2 (SH2 domain-containing|
           leucocyte protein of 76 kDa) (SLP-76 tyrosine
           phosphoprotein) (SLP76)
          Length = 533

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 17/52 (32%), Positives = 20/52 (38%)
 Frame = +3

Query: 336 TPNPMPYHVQPPHHMQGVPPHMMSNMHPPLPPGQQHMIRMSGPMGHMPNSIP 491
           TP   P  V P   M  +PP      H PLPP Q +    S    H    +P
Sbjct: 182 TPQQPP--VPPQRPMAALPPPPAGRNHSPLPPPQTNHEEPSRSRNHKTAKLP 231

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>CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa|
           subunit) (CF-1 64 kDa subunit) (CstF-64)
          Length = 577

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = +3

Query: 351 PYHVQPPHHMQGVPPHMMSNMHPPLPPGQQHMIRMSGPM 467
           P H  P H  +G PPH +     PLP  +  M    GPM
Sbjct: 355 PMHHVPGHESRGPPPHELRG--GPLPEPRPLMAEPRGPM 391

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>CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa|
           subunit) (CF-1 64 kDa subunit) (CstF-64)
          Length = 577

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = +3

Query: 351 PYHVQPPHHMQGVPPHMMSNMHPPLPPGQQHMIRMSGPM 467
           P H  P H  +G PPH +     PLP  +  M    GPM
Sbjct: 355 PMHHVPGHESRGPPPHELRG--GPLPEPRPLMAEPRGPM 391

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>BRD4_MOUSE (Q9ESU6) Bromodomain-containing protein 4 (Mitotic|
            chromosome-associated protein) (MCAP)
          Length = 1400

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 18/44 (40%), Positives = 19/44 (43%), Gaps = 10/44 (22%)
 Frame = +3

Query: 339  PNPMPYHVQPPHHMQGVPP----HMMSN------MHPPLPPGQQ 440
            P P P   QPP   Q  PP    H+ S         PP PPGQQ
Sbjct: 978  PPPPPPQPQPPPQQQHQPPPRPVHLPSMPFSAHIQQPPPPPGQQ 1021



 Score = 28.9 bits (63), Expect = 7.8
 Identities = 16/49 (32%), Positives = 19/49 (38%), Gaps = 3/49 (6%)
 Frame = +3

Query: 327 PRFTPNPMPYHVQPPHHMQ---GVPPHMMSNMHPPLPPGQQHMIRMSGP 464
           P+  P P P   QPP   Q     PP       PP PP    M + + P
Sbjct: 745 PQMQPAPAPVPQQPPPPPQQPPPPPPPQQQQQQPPPPPPPPSMPQQTAP 793

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>SMAD4_RAT (O70437) Mothers against decapentaplegic homolog 4 (SMAD 4)|
           (Mothers against DPP homolog 4) (Smad4)
          Length = 552

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 14/43 (32%), Positives = 17/43 (39%)
 Frame = +3

Query: 351 PYHVQPPHHMQGVPPHMMSNMHPPLPPGQQHMIRMSGPMGHMP 479
           PY    PHH  G   H     HPP+PP   H   +   +   P
Sbjct: 275 PYTPNLPHHQNGHLQH-----HPPMPPHPGHYWPVHNELAFQP 312

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>SMAD4_PIG (Q9GKQ9) Mothers against decapentaplegic homolog 4 (SMAD 4)|
           (Mothers against DPP homolog 4) (Smad4)
          Length = 552

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 14/43 (32%), Positives = 17/43 (39%)
 Frame = +3

Query: 351 PYHVQPPHHMQGVPPHMMSNMHPPLPPGQQHMIRMSGPMGHMP 479
           PY    PHH  G   H     HPP+PP   H   +   +   P
Sbjct: 275 PYPPNLPHHQNGHLQH-----HPPMPPHPGHYWPVHNELAFQP 312

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>SMAD4_HUMAN (Q13485) Mothers against decapentaplegic homolog 4 (SMAD 4)|
           (Mothers against DPP homolog 4) (Deletion target in
           pancreatic carcinoma 4) (hSMAD4)
          Length = 552

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 14/43 (32%), Positives = 17/43 (39%)
 Frame = +3

Query: 351 PYHVQPPHHMQGVPPHMMSNMHPPLPPGQQHMIRMSGPMGHMP 479
           PY    PHH  G   H     HPP+PP   H   +   +   P
Sbjct: 275 PYTPNLPHHQNGHLQH-----HPPMPPHPGHYWPVHNELAFQP 312

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>PPSA_ECOLI (P23538) Phosphoenolpyruvate synthase (EC 2.7.9.2) (Pyruvate, water|
           dikinase) (PEP synthase)
          Length = 791

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
 Frame = +3

Query: 84  DIFGTTEEEVSNAVKAEIE-KKKDEQPKQVIW--DGHSGSI 197
           DIF  T EEV    K  ++ +K   +P  + W  DGH+G +
Sbjct: 289 DIFSLTNEEVQELAKQAVQIEKHYGRPMDIEWAKDGHTGKL 329

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>RPB1_CAEEL (P16356) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
          Length = 1852

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 20/73 (27%), Positives = 28/73 (38%)
 Frame = +2

Query: 212  PGNVYXXXXXXXXXXXXXXXPAWHAVTPASPTTFLGQCSPIYTQSNALSCPTPSSYARSS 391
            PG VY               P   + +P SP       SP Y+ ++    PT  SY+ +S
Sbjct: 1572 PG-VYSPSSPQFSMTSPHYSPTSPSYSPTSPAAGQSPVSPSYSPTSPSYSPTSPSYSPTS 1630

Query: 392  TAYDVQYASTSAT 430
             +Y     S S T
Sbjct: 1631 PSYSPTSPSYSPT 1643

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>EXTN_SORBI (P24152) Extensin precursor (Proline-rich glycoprotein)|
          Length = 283

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 18/63 (28%), Positives = 23/63 (36%), Gaps = 8/63 (12%)
 Frame = +3

Query: 327 PRFTPNPMPYHVQPPHH--------MQGVPPHMMSNMHPPLPPGQQHMIRMSGPMGHMPN 482
           P +TPNP P   +PP H         +  PP    +  PP P    +      P    P 
Sbjct: 166 PVYTPNPKPPVTKPPTHTPSPKPPTSKPTPPVYTPSPKPPKPSPPTYTPTPKPPATKPPT 225

Query: 483 SIP 491
           S P
Sbjct: 226 STP 228

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>AKT1_ORYSA (Q8VYX2) Potassium channel AKT1 (OsAKT1)|
          Length = 935

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 16/46 (34%), Positives = 29/46 (63%), Gaps = 8/46 (17%)
 Frame = +1

Query: 73  VLGQIFLEPPRKRFL-----MPSR---QKLKRKRMSSQSRLFGMVT 186
           ++G+   EP  K  +     +PSR   +KL+RKR++ Q+ LFG+++
Sbjct: 779 LIGRFNSEPMMKNMIHEDADLPSRVLPEKLRRKRVTFQNSLFGVIS 824

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>FOR3_SCHPO (O94532) Formin-3|
          Length = 1461

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 15/33 (45%), Positives = 16/33 (48%)
 Frame = +3

Query: 336 TPNPMPYHVQPPHHMQGVPPHMMSNMHPPLPPG 434
           TP P P  V PP  + G PP       PP PPG
Sbjct: 743 TPAPAPIPVPPPAPIMGGPP------PPPPPPG 769


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,373,771
Number of Sequences: 219361
Number of extensions: 1709442
Number of successful extensions: 6982
Number of sequences better than 10.0: 63
Number of HSP's better than 10.0 without gapping: 5893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6770
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3478785780
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

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