Clone Information

BLAST Search Result

Clone Name	baal13o01
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	214	2e-52
2	dbj\|AP004117.3\| Oryza sativa (japonica cultivar-group) genomic D...	214	2e-52
3	dbj\|AK119770.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	214	2e-52
4	dbj\|AK119874.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	214	2e-52
5	gb\|AC141922.19\| Medicago truncatula clone mth2-9n11, complete se...	115	1e-22
6	gb\|AC170800.5\| Medicago truncatula clone mth2-32n7, complete seq...	115	1e-22
7	ref\|NM_101332.3\| Arabidopsis thaliana RNA binding AT1G14650 mRNA...	68	3e-08
8	gb\|AY081293.1\| Arabidopsis thaliana splicing factor, putative (A...	68	3e-08
9	gb\|AC010657.3\|AC010657 Genomic sequence for Arabidopsis thaliana...	68	3e-08
10	gb\|AC004687.1\|AC004687 Homo sapiens chromosome 17, clone hRPC.11...	44	0.43
11	dbj\|AP006352.1\| Lotus japonicus genomic DNA, chromosome 2, clone...	44	0.43
12	ref\|NM_101331.1\| Arabidopsis thaliana RNA binding AT1G14640 mRNA...	42	1.7
13	gb\|AC092710.6\| Mus musculus chromosome 13, clone RP23-5A19, comp...	42	1.7
14	gb\|AC138022.14\| Botryllus schlosseri clone subsf-533i14, complet...	42	1.7
15	gb\|AC026789.5\| Homo sapiens chromosome 5 clone CTD-2219P2, compl...	42	1.7
16	gb\|AC026727.6\| Homo sapiens chromosome 5 clone CTD-2258D6, compl...	42	1.7
17	gb\|AC010226.5\|AC010226 Homo sapiens chromosome 5 clone CTC-286N1...	42	1.7
18	gb\|AC133106.3\| Homo sapiens BAC clone RP11-634B17 from 2, comple...	42	1.7
19	dbj\|BS000207.2\| Pan troglodytes chromosome 22 clone:PTB-155J22, ...	42	1.7
20	emb\|AL032627.2\|CEY41C4A Caenorhabditis elegans YAC Y41C4A, compl...	42	1.7
21	gb\|AC110180.10\| Mus musculus chromosome 19, clone RP24-358B11, c...	40	6.6
22	ref\|XM_453971.1\| Kluyveromyces lactis NRRL Y-1140, KLLA0E00484g ...	40	6.6
23	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	40	6.6
24	gb\|AY363103.1\|AY363102S2 Mus musculus diadenosine triphosphate h...	40	6.6
25	gb\|AC117202.2\| Mus musculus BAC clone RP23-248L5 from 14, comple...	40	6.6
26	gb\|AC102431.7\| Mus musculus chromosome 14, clone RP24-106J1, com...	40	6.6
27	emb\|AL353795.13\| Human DNA sequence from clone RP11-182N22 on ch...	40	6.6
28	emb\|AL354669.12\| Human DNA sequence from clone RP11-201P13 on ch...	40	6.6
29	emb\|AL158191.17\| Human DNA sequence from clone RP11-309H15 on ch...	40	6.6
30	emb\|CR450800.9\| Zebrafish DNA sequence from clone DKEY-83F4 in l...	40	6.6
31	emb\|CR382125.1\| Kluyveromyces lactis strain NRRL Y-1140 chromoso...	40	6.6
32	emb\|AL607083.17\| Mouse DNA sequence from clone RP23-206E3 on chr...	40	6.6
33	gb\|CP000076.1\| Pseudomonas fluorescens Pf-5, complete genome	40	6.6
34	emb\|CR318657.8\| Zebrafish DNA sequence from clone DKEY-114G7 in ...	40	6.6
35	gb\|AC139854.21\| Medicago truncatula clone mth2-16e16, complete s...	40	6.6
36	gb\|AC134763.4\| Rattus norvegicus BAC CH230-221M14 (Children's H...	40	6.6
37	gb\|AC150442.2\| Medicago truncatula chromosome 7 BAC clone mth2-2...	40	6.6
38	dbj\|AK034134.1\| Mus musculus adult male diencephalon cDNA, RIKEN...	40	6.6
39	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.6
40	gb\|AC108906.9\| Oryza sativa chromosome 3 BAC OSJNBa0087C10 genom...	40	6.6
41	gb\|AC084506.1\|CBRG15A11 Caenorhabditis briggsae cosmid G15A11, c...	40	6.6
42	emb\|BX000522.11\| Zebrafish DNA sequence from clone CH211-146K11,...	40	6.6
43	emb\|AL929103.7\| Zebrafish DNA sequence from clone CH211-122O8, c...	40	6.6
44	emb\|AL928703.9\| Mouse DNA sequence from clone RP23-308K19 on chr...	40	6.6
45	emb\|CR388128.18\| Zebrafish DNA sequence from clone CH211-127B17 ...	40	6.6
46	dbj\|AP004933.1\| Lotus japonicus genomic DNA, chromosome 1, clone...	40	6.6

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score =  214 bits (108), Expect = 2e-52
 Identities = 207/240 (86%)
 Strand = Plus / Plus

                                                                           
Query: 12      attaaggagaccacgcttgctcctgatgatgagatctcccgtaacattataggtctcgca 71
               ||||||||||| || ||||||||||||||||| |||||| | |||||| | ||||| || 
Sbjct: 8197502 attaaggagacaacacttgctcctgatgatgaaatctccaggaacattgtgggtcttgcc 8197561

                                                                           
Query: 72      cgtactaggccagatatttttggaaccaccgaggaagaggtttctaatgccgtcaaggca 131
               ||||| |||||||| || |||||||| || ||||||||||| |||||||| |||||||||
Sbjct: 8197562 cgtaccaggccagacatctttggaacaacagaggaagaggtctctaatgctgtcaaggca 8197621

                                                                           
Query: 132     gaaattgaaaagaaaaaggatgagcagccaaagcaggttatttgggatggtcactctggg 191
               |||||||| |||||||||||||| |||||||||||||||||||||||||| || ||||| 
Sbjct: 8197622 gaaattgagaagaaaaaggatgaacagccaaagcaggttatttgggatggccattctggt 8197681

                                                                           
Query: 192     agcatcggttggacagccacccaggcaatgtctatcggtggagaagaacagggtgatgct 251
               ||||| ||| | || ||||| |||||  ||||||| || || || ||||||| |||||||
Sbjct: 8197682 agcataggtcgtactgccacacaggctctgtctatgggcggcgaggaacaggttgatgct 8197741



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                    
Query: 428     accaggtcaacagcacatgattaggatgtcaggtcccatgggtcatatgccaa 480
               ||||||||| | |||  ||||||||||| ||||| | ||||||| ||||||||
Sbjct: 8197936 accaggtcagccgcaggtgattaggatgccaggttcaatgggtcctatgccaa 8197988

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>dbj|AP004117.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1134_F06
          Length = 130968

 Score =  214 bits (108), Expect = 2e-52
 Identities = 207/240 (86%)
 Strand = Plus / Plus

                                                                         
Query: 12    attaaggagaccacgcttgctcctgatgatgagatctcccgtaacattataggtctcgca 71
             ||||||||||| || ||||||||||||||||| |||||| | |||||| | ||||| || 
Sbjct: 29648 attaaggagacaacacttgctcctgatgatgaaatctccaggaacattgtgggtcttgcc 29707

                                                                         
Query: 72    cgtactaggccagatatttttggaaccaccgaggaagaggtttctaatgccgtcaaggca 131
             ||||| |||||||| || |||||||| || ||||||||||| |||||||| |||||||||
Sbjct: 29708 cgtaccaggccagacatctttggaacaacagaggaagaggtctctaatgctgtcaaggca 29767

                                                                         
Query: 132   gaaattgaaaagaaaaaggatgagcagccaaagcaggttatttgggatggtcactctggg 191
             |||||||| |||||||||||||| |||||||||||||||||||||||||| || ||||| 
Sbjct: 29768 gaaattgagaagaaaaaggatgaacagccaaagcaggttatttgggatggccattctggt 29827

                                                                         
Query: 192   agcatcggttggacagccacccaggcaatgtctatcggtggagaagaacagggtgatgct 251
             ||||| ||| | || ||||| |||||  ||||||| || || || ||||||| |||||||
Sbjct: 29828 agcataggtcgtactgccacacaggctctgtctatgggcggcgaggaacaggttgatgct 29887



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                  
Query: 428   accaggtcaacagcacatgattaggatgtcaggtcccatgggtcatatgccaa 480
             ||||||||| | |||  ||||||||||| ||||| | ||||||| ||||||||
Sbjct: 30082 accaggtcagccgcaggtgattaggatgccaggttcaatgggtcctatgccaa 30134

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>dbj|AK119770.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-172-F01, full
            insert sequence
          Length = 2370

 Score =  214 bits (108), Expect = 2e-52
 Identities = 207/240 (86%)
 Strand = Plus / Plus

                                                                        
Query: 12   attaaggagaccacgcttgctcctgatgatgagatctcccgtaacattataggtctcgca 71
            ||||||||||| || ||||||||||||||||| |||||| | |||||| | ||||| || 
Sbjct: 1187 attaaggagacaacacttgctcctgatgatgaaatctccaggaacattgtgggtcttgcc 1246

                                                                        
Query: 72   cgtactaggccagatatttttggaaccaccgaggaagaggtttctaatgccgtcaaggca 131
            ||||| |||||||| || |||||||| || ||||||||||| |||||||| |||||||||
Sbjct: 1247 cgtaccaggccagacatctttggaacaacagaggaagaggtctctaatgctgtcaaggca 1306

                                                                        
Query: 132  gaaattgaaaagaaaaaggatgagcagccaaagcaggttatttgggatggtcactctggg 191
            |||||||| |||||||||||||| |||||||||||||||||||||||||| || ||||| 
Sbjct: 1307 gaaattgagaagaaaaaggatgaacagccaaagcaggttatttgggatggccattctggt 1366

                                                                        
Query: 192  agcatcggttggacagccacccaggcaatgtctatcggtggagaagaacagggtgatgct 251
            ||||| ||| | || ||||| |||||  ||||||| || || || ||||||| |||||||
Sbjct: 1367 agcataggtcgtactgccacacaggctctgtctatgggcggcgaggaacaggttgatgct 1426



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                 
Query: 428  accaggtcaacagcacatgattaggatgtcaggtcccatgggtcatatgccaa 480
            ||||||||| | |||  ||||||||||| ||||| | ||||||| ||||||||
Sbjct: 1621 accaggtcagccgcaggtgattaggatgccaggttcaatgggtcctatgccaa 1673

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>dbj|AK119874.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-179-E06, full
            insert sequence
          Length = 2578

 Score =  214 bits (108), Expect = 2e-52
 Identities = 207/240 (86%)
 Strand = Plus / Plus

                                                                        
Query: 12   attaaggagaccacgcttgctcctgatgatgagatctcccgtaacattataggtctcgca 71
            ||||||||||| || ||||||||||||||||| |||||| | |||||| | ||||| || 
Sbjct: 1387 attaaggagacaacacttgctcctgatgatgaaatctccaggaacattgtgggtcttgcc 1446

                                                                        
Query: 72   cgtactaggccagatatttttggaaccaccgaggaagaggtttctaatgccgtcaaggca 131
            ||||| |||||||| || |||||||| || ||||||||||| |||||||| |||||||||
Sbjct: 1447 cgtaccaggccagacatctttggaacaacagaggaagaggtctctaatgctgtcaaggca 1506

                                                                        
Query: 132  gaaattgaaaagaaaaaggatgagcagccaaagcaggttatttgggatggtcactctggg 191
            |||||||| |||||||||||||| |||||||||||||||||||||||||| || ||||| 
Sbjct: 1507 gaaattgagaagaaaaaggatgaacagccaaagcaggttatttgggatggccattctggt 1566

                                                                        
Query: 192  agcatcggttggacagccacccaggcaatgtctatcggtggagaagaacagggtgatgct 251
            ||||| ||| | || ||||| |||||  ||||||| || || || ||||||| |||||||
Sbjct: 1567 agcataggtcgtactgccacacaggctctgtctatgggcggcgaggaacaggttgatgct 1626



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                 
Query: 428  accaggtcaacagcacatgattaggatgtcaggtcccatgggtcatatgccaa 480
            ||||||||| | |||  ||||||||||| ||||| | ||||||| ||||||||
Sbjct: 1821 accaggtcagccgcaggtgattaggatgccaggttcaatgggtcctatgccaa 1873

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>gb|AC141922.19| Medicago truncatula clone mth2-9n11, complete sequence
          Length = 107448

 Score =  115 bits (58), Expect = 1e-22
 Identities = 91/102 (89%)
 Strand = Plus / Minus

                                                                         
Query: 84    gatatttttggaaccaccgaggaagaggtttctaatgccgtcaaggcagaaattgaaaag 143
             ||||||||||| || ||||||||||||||||| ||||| || ||||| |||||||| |||
Sbjct: 27626 gatatttttggtactaccgaggaagaggtttccaatgctgttaaggctgaaattgagaag 27567

                                                       
Query: 144   aaaaaggatgagcagccaaagcaggttatttgggatggtcac 185
             ||||| |||||||| || ||||||||||| ||||||||||||
Sbjct: 27566 aaaaatgatgagcaacctaagcaggttatatgggatggtcac 27525

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>gb|AC170800.5| Medicago truncatula clone mth2-32n7, complete sequence
          Length = 99712

 Score =  115 bits (58), Expect = 1e-22
 Identities = 91/102 (89%)
 Strand = Plus / Minus

                                                                         
Query: 84    gatatttttggaaccaccgaggaagaggtttctaatgccgtcaaggcagaaattgaaaag 143
             ||||||||||| || ||||||||||||||||| ||||| || ||||| |||||||| |||
Sbjct: 17143 gatatttttggtactaccgaggaagaggtttccaatgctgttaaggctgaaattgagaag 17084

                                                       
Query: 144   aaaaaggatgagcagccaaagcaggttatttgggatggtcac 185
             ||||| |||||||| || ||||||||||| ||||||||||||
Sbjct: 17083 aaaaatgatgagcaacctaagcaggttatatgggatggtcac 17042

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>ref|NM_101332.3| Arabidopsis thaliana RNA binding AT1G14650 mRNA, complete cds
          Length = 2789

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 85/102 (83%)
 Strand = Plus / Plus

                                                                        
Query: 84   gatatttttggaaccaccgaggaagaggtttctaatgccgtcaaggcagaaattgaaaag 143
            ||||| |||||||| ||||| ||||| || || ||||| || || ||||| ||||| |||
Sbjct: 1579 gatatctttggaacaaccgaagaagaagtctcaaatgctgtaaaagcagagattgagaag 1638

                                                      
Query: 144  aaaaaggatgagcagccaaagcaggttatttgggatggtcac 185
            || || ||||||||||| ||||| || || ||||||||||||
Sbjct: 1639 aagaaagatgagcagcccaagcaagtgatatgggatggtcac 1680

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>gb|AY081293.1| Arabidopsis thaliana splicing factor, putative (At1g14650) mRNA,
            complete cds
          Length = 2740

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 85/102 (83%)
 Strand = Plus / Plus

                                                                        
Query: 84   gatatttttggaaccaccgaggaagaggtttctaatgccgtcaaggcagaaattgaaaag 143
            ||||| |||||||| ||||| ||||| || || ||||| || || ||||| ||||| |||
Sbjct: 1544 gatatctttggaacaaccgaagaagaagtctcaaatgctgtaaaagcagagattgagaag 1603

                                                      
Query: 144  aaaaaggatgagcagccaaagcaggttatttgggatggtcac 185
            || || ||||||||||| ||||| || || ||||||||||||
Sbjct: 1604 aagaaagatgagcagcccaagcaagtgatatgggatggtcac 1645

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>gb|AC010657.3|AC010657 Genomic sequence for Arabidopsis thaliana BAC T5E21 from chromosome I,
             complete sequence
          Length = 83351

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 85/102 (83%)
 Strand = Plus / Plus

                                                                         
Query: 84    gatatttttggaaccaccgaggaagaggtttctaatgccgtcaaggcagaaattgaaaag 143
             ||||| |||||||| ||||| ||||| || || ||||| || || ||||| ||||| |||
Sbjct: 66968 gatatctttggaacaaccgaagaagaagtctcaaatgctgtaaaagcagagattgagaag 67027

                                                       
Query: 144   aaaaaggatgagcagccaaagcaggttatttgggatggtcac 185
             || || ||||||||||| ||||| || || ||||||||||||
Sbjct: 67028 aagaaagatgagcagcccaagcaagtgatatgggatggtcac 67069



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 86/107 (80%), Gaps = 3/107 (2%)
 Strand = Plus / Plus

                                                                         
Query: 84    gatatttttggaaccaccgaggaagaggtttctaatgccgtcaaggcagaaattgaaaag 143
             ||||| |||||||| || || ||||| ||||| ||||| || || ||||| |||||   |
Sbjct: 62517 gatatctttggaacaacagaagaagaagtttcaaatgctgtaaaagcagatattga---g 62573

                                                            
Query: 144   aaaaaggatgagcagccaaagcaggttatttgggatggtcactctgg 190
             ||||| |||||||| || || || || || |||||||||||| ||||
Sbjct: 62574 aaaaaagatgagcaaccgaaacaagtaatatgggatggtcacactgg 62620

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>gb|AC004687.1|AC004687 Homo sapiens chromosome 17, clone hRPC.1171_I_10, complete sequence
          Length = 175120

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 228   ggtggagaagaacagggtgatg 249
             ||||||||||||||||||||||
Sbjct: 91469 ggtggagaagaacagggtgatg 91490

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>dbj|AP006352.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT40O04, TM0348,
              complete sequence
          Length = 105070

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 131    agaaattgaaaagaaaaaggat 152
              ||||||||||||||||||||||
Sbjct: 101676 agaaattgaaaagaaaaaggat 101697

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>ref|NM_101331.1| Arabidopsis thaliana RNA binding AT1G14640 mRNA, complete cds
          Length = 2208

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 86/107 (80%), Gaps = 3/107 (2%)
 Strand = Plus / Plus

                                                                        
Query: 84   gatatttttggaaccaccgaggaagaggtttctaatgccgtcaaggcagaaattgaaaag 143
            ||||| |||||||| || || ||||| ||||| ||||| || || ||||| |||||   |
Sbjct: 1390 gatatctttggaacaacagaagaagaagtttcaaatgctgtaaaagcagatattga---g 1446

                                                           
Query: 144  aaaaaggatgagcagccaaagcaggttatttgggatggtcactctgg 190
            ||||| |||||||| || || || || || |||||||||||| ||||
Sbjct: 1447 aaaaaagatgagcaaccgaaacaagtaatatgggatggtcacactgg 1493

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>gb|AC092710.6| Mus musculus chromosome 13, clone RP23-5A19, complete sequence
          Length = 268129

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 308    actttccttggtcaatgttcc 328
              |||||||||||||||||||||
Sbjct: 142534 actttccttggtcaatgttcc 142514

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>gb|AC138022.14| Botryllus schlosseri clone subsf-533i14, complete sequence
          Length = 44370

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 72    cgtactaggccagatattttt 92
             |||||||||||||||||||||
Sbjct: 34620 cgtactaggccagatattttt 34600

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>gb|AC026789.5| Homo sapiens chromosome 5 clone CTD-2219P2, complete sequence
          Length = 176072

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 149   ggatgagcagccaaagcaggt 169
             |||||||||||||||||||||
Sbjct: 44300 ggatgagcagccaaagcaggt 44280

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>gb|AC026727.6| Homo sapiens chromosome 5 clone CTD-2258D6, complete sequence
          Length = 176072

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 149   ggatgagcagccaaagcaggt 169
             |||||||||||||||||||||
Sbjct: 44300 ggatgagcagccaaagcaggt 44280

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>gb|AC010226.5|AC010226 Homo sapiens chromosome 5 clone CTC-286N18, complete sequence
          Length = 147140

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 149   ggatgagcagccaaagcaggt 169
             |||||||||||||||||||||
Sbjct: 21187 ggatgagcagccaaagcaggt 21207

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>gb|AC133106.3| Homo sapiens BAC clone RP11-634B17 from 2, complete sequence
          Length = 109568

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 137  tgaaaagaaaaaggatgagca 157
            |||||||||||||||||||||
Sbjct: 5614 tgaaaagaaaaaggatgagca 5594

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>dbj|BS000207.2| Pan troglodytes chromosome 22 clone:PTB-155J22, map 22, complete
              sequences
          Length = 193476

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 149    ggatgagcagccaaagcaggt 169
              |||||||||||||||||||||
Sbjct: 101956 ggatgagcagccaaagcaggt 101976

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>emb|AL032627.2|CEY41C4A Caenorhabditis elegans YAC Y41C4A, complete sequence
          Length = 129061

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 133   aaattgaaaagaaaaaggatgagca 157
             |||||||||| ||||||||||||||
Sbjct: 48139 aaattgaaaataaaaaggatgagca 48163

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>gb|AC110180.10| Mus musculus chromosome 19, clone RP24-358B11, complete sequence
          Length = 144511

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 131   agaaattgaaaagaaaaagg 150
             ||||||||||||||||||||
Sbjct: 50969 agaaattgaaaagaaaaagg 50988

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>ref|XM_453971.1| Kluyveromyces lactis NRRL Y-1140, KLLA0E00484g predicted mRNA
          Length = 729

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 88  tttttggaaccaccgaggaa 107
           ||||||||||||||||||||
Sbjct: 461 tttttggaaccaccgaggaa 480

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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 131      agaaattgaaaagaaaaagg 150
                ||||||||||||||||||||
Sbjct: 33215250 agaaattgaaaagaaaaagg 33215231

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>gb|AY363103.1|AY363102S2 Mus musculus diadenosine triphosphate hydrolase (Fhit) gene, exons 6
              through 10 and partial cds
          Length = 688489

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 127    aggcagaaattgaaaagaaa 146
              ||||||||||||||||||||
Sbjct: 286622 aggcagaaattgaaaagaaa 286641

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>gb|AC117202.2| Mus musculus BAC clone RP23-248L5 from 14, complete sequence
          Length = 209508

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 131   agaaattgaaaagaaaaagg 150
             ||||||||||||||||||||
Sbjct: 37419 agaaattgaaaagaaaaagg 37438

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>gb|AC102431.7| Mus musculus chromosome 14, clone RP24-106J1, complete sequence
          Length = 157923

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 127   aggcagaaattgaaaagaaa 146
             ||||||||||||||||||||
Sbjct: 24387 aggcagaaattgaaaagaaa 24368

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>emb|AL353795.13| Human DNA sequence from clone RP11-182N22 on chromosome 9 Contains a
              novel gene, the VCP gene for valosin-containing protein,
              the FANCG gene for Fanconi anemia, complementation group G
              (FAG, XRCC9), the gene for phosphatidylinositol glycan
              class O (PIGO), a novel gene, the STOML2 gene for stomatin
              (EPB72)-like 2 (SLP-2), a novel gene (KIAA1539) (FLJ11560),
              a zinc finger protein pseudogene, the 5' end of the UNC13
              gene for unc-13-like (C. elegans) (hmunc13) and nine CpG
              islands, complete sequence
          Length = 195102

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 149    ggatgagcagccaaagcagg 168
              ||||||||||||||||||||
Sbjct: 125494 ggatgagcagccaaagcagg 125513

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>emb|AL354669.12| Human DNA sequence from clone RP11-201P13 on chromosome 9p13.1-21.1
            Contains the 5' end of the UNC13 gene for unc-13-like (C.
            elegans)(MUNC13,hmunc13), complete sequence
          Length = 142602

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 149  ggatgagcagccaaagcagg 168
            ||||||||||||||||||||
Sbjct: 2301 ggatgagcagccaaagcagg 2320

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>emb|AL158191.17| Human DNA sequence from clone RP11-309H15 on chromosome 13, complete
             sequence
          Length = 80598

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 410   tatgcatccacctctgccac 429
             ||||||||||||||||||||
Sbjct: 43939 tatgcatccacctctgccac 43958

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>emb|CR450800.9| Zebrafish DNA sequence from clone DKEY-83F4 in linkage group 8,
             complete sequence
          Length = 120875

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 397   atatgatgtccaatatgcat 416
             ||||||||||||||||||||
Sbjct: 94133 atatgatgtccaatatgcat 94114

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>emb|CR382125.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome E of strain NRRL
             Y-1140 of Kluyveromyces lactis
          Length = 2234072

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 88    tttttggaaccaccgaggaa 107
             ||||||||||||||||||||
Sbjct: 46023 tttttggaaccaccgaggaa 46004

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>emb|AL607083.17| Mouse DNA sequence from clone RP23-206E3 on chromosome 11 Contains a
             novel gene, complete sequence
          Length = 189495

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 130   cagaaattgaaaagaaaaag 149
             ||||||||||||||||||||
Sbjct: 22426 cagaaattgaaaagaaaaag 22445

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>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 252     ccaggtccagctccacttcc 271
               ||||||||||||||||||||
Sbjct: 5635284 ccaggtccagctccacttcc 5635265

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>emb|CR318657.8| Zebrafish DNA sequence from clone DKEY-114G7 in linkage group 20,
             complete sequence
          Length = 151250

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 132   gaaattgaaaagaaaaagga 151
             ||||||||||||||||||||
Sbjct: 20112 gaaattgaaaagaaaaagga 20093

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>gb|AC139854.21| Medicago truncatula clone mth2-16e16, complete sequence
          Length = 117864

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 225    atcggtggagaagaacaggg 244
              ||||||||||||||||||||
Sbjct: 114353 atcggtggagaagaacaggg 114334

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>gb|AC134763.4| Rattus norvegicus  BAC CH230-221M14 (Children's Hospital Oakland Research
              Institute Rat (BN/SsNHsd/MCW) BAC library) complete
              sequence
          Length = 222524

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 450    aggatgtcaggtcccatggg 469
              ||||||||||||||||||||
Sbjct: 191656 aggatgtcaggtcccatggg 191637

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>gb|AC150442.2| Medicago truncatula chromosome 7 BAC clone mth2-2o12, complete sequence
          Length = 89504

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 225   atcggtggagaagaacaggg 244
             ||||||||||||||||||||
Sbjct: 14114 atcggtggagaagaacaggg 14095

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>dbj|AK034134.1| Mus musculus adult male diencephalon cDNA, RIKEN full-length
           enriched library, clone:9330158P05
           product:unclassifiable, full insert sequence
          Length = 2797

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 132 gaaattgaaaagaaaaagga 151
           ||||||||||||||||||||
Sbjct: 65  gaaattgaaaagaaaaagga 46

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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 131      agaaattgaaaagaaaaagg 150
                ||||||||||||||||||||
Sbjct: 33305760 agaaattgaaaagaaaaagg 33305741

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>gb|AC108906.9| Oryza sativa chromosome 3 BAC OSJNBa0087C10 genomic sequence, complete
             sequence
          Length = 144487

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 131   agaaattgaaaagaaaaagg 150
             ||||||||||||||||||||
Sbjct: 29305 agaaattgaaaagaaaaagg 29324

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>gb|AC084506.1|CBRG15A11 Caenorhabditis briggsae cosmid G15A11, complete sequence
          Length = 42688

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 126  aaggcagaaattgaaaagaaaaag 149
            ||||| ||||||||||||||||||
Sbjct: 3401 aaggctgaaattgaaaagaaaaag 3378

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>emb|BX000522.11| Zebrafish DNA sequence from clone CH211-146K11, complete sequence
          Length = 175406

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 132   gaaattgaaaagaaaaagga 151
             ||||||||||||||||||||
Sbjct: 29027 gaaattgaaaagaaaaagga 29046

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>emb|AL929103.7| Zebrafish DNA sequence from clone CH211-122O8, complete sequence
          Length = 168630

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 132   gaaattgaaaagaaaaagga 151
             ||||||||||||||||||||
Sbjct: 49970 gaaattgaaaagaaaaagga 49951

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>emb|AL928703.9| Mouse DNA sequence from clone RP23-308K19 on chromosome 2, complete
             sequence
          Length = 109891

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 132   gaaattgaaaagaaaaagga 151
             ||||||||||||||||||||
Sbjct: 86405 gaaattgaaaagaaaaagga 86424

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>emb|CR388128.18| Zebrafish DNA sequence from clone CH211-127B17 in linkage group 18,
              complete sequence
          Length = 180022

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 132    gaaattgaaaagaaaaagga 151
              ||||||||||||||||||||
Sbjct: 117688 gaaattgaaaagaaaaagga 117669

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>dbj|AP004933.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT10J03, TM0094b,
             complete sequence
          Length = 65726

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 131   agaaattgaaaagaaaaagg 150
             ||||||||||||||||||||
Sbjct: 59460 agaaattgaaaagaaaaagg 59479


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,527,115
Number of Sequences: 3902068
Number of extensions: 4527115
Number of successful extensions: 90891
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 90685
Number of HSP's gapped (non-prelim): 207
length of query: 491
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 469
effective length of database: 17,147,199,772
effective search space: 8042036693068
effective search space used: 8042036693068
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result