| Clone Name | baal13n19 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_481988.1| Oryza sativa (japonica cultivar-group), mRNA Length = 815 Score = 321 bits (162), Expect = 1e-84 Identities = 261/294 (88%) Strand = Plus / Plus Query: 127 atggctgggattggtccgctcaggcaggactgggagccgatagtggtgcggaagagggcc 186 ||||| |||||||||||| |||||||||||||||||||| | ||||||||||||| ||| Sbjct: 104 atggccgggattggtccgatcaggcaggactgggagccggtggtggtgcggaagaaggcg 163 Query: 187 cagaacgccgcggacaagaaggacgaaaaggccgtcaacgctgcccgccgctccggcgcc 246 | | |||||| | ||||||||| || |||||||||||||| |||||||||||||||||| Sbjct: 164 cccaccgccgccgccaagaaggatgagaaggccgtcaacgccgcccgccgctccggcgcc 223 Query: 247 gagatcgacaccaccaagaagtataacgctggaacgaacaaggctgcatctagcggaact 306 |||||||| |||| |||||||||||||||||||| |||||||| || || || || || Sbjct: 224 gagatcgagaccatgaagaagtataacgctggaacaaacaaggcggcgtccagtggcaca 283 Query: 307 tccctcaacaccaagcggctcgacgacgacactgagaacctttcccatgagcgtgtttca 366 |||||||||||||||||||| || |||||||| |||| |||| ||||||||||||| ||| Sbjct: 284 tccctcaacaccaagcggctggatgacgacaccgagagccttgcccatgagcgtgtctca 343 Query: 367 agcgacctgaagaaaaaccttatgcaagcaaggctggataagaagatgacccag 420 || ||||||||||||||||| ||||||||||||||||| ||||||||||||||| Sbjct: 344 agtgacctgaagaaaaacctcatgcaagcaaggctggacaagaagatgacccag 397
>dbj|AK061882.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-F01, full insert sequence Length = 815 Score = 321 bits (162), Expect = 1e-84 Identities = 261/294 (88%) Strand = Plus / Plus Query: 127 atggctgggattggtccgctcaggcaggactgggagccgatagtggtgcggaagagggcc 186 ||||| |||||||||||| |||||||||||||||||||| | ||||||||||||| ||| Sbjct: 104 atggccgggattggtccgatcaggcaggactgggagccggtggtggtgcggaagaaggcg 163 Query: 187 cagaacgccgcggacaagaaggacgaaaaggccgtcaacgctgcccgccgctccggcgcc 246 | | |||||| | ||||||||| || |||||||||||||| |||||||||||||||||| Sbjct: 164 cccaccgccgccgccaagaaggatgagaaggccgtcaacgccgcccgccgctccggcgcc 223 Query: 247 gagatcgacaccaccaagaagtataacgctggaacgaacaaggctgcatctagcggaact 306 |||||||| |||| |||||||||||||||||||| |||||||| || || || || || Sbjct: 224 gagatcgagaccatgaagaagtataacgctggaacaaacaaggcggcgtccagtggcaca 283 Query: 307 tccctcaacaccaagcggctcgacgacgacactgagaacctttcccatgagcgtgtttca 366 |||||||||||||||||||| || |||||||| |||| |||| ||||||||||||| ||| Sbjct: 284 tccctcaacaccaagcggctggatgacgacaccgagagccttgcccatgagcgtgtctca 343 Query: 367 agcgacctgaagaaaaaccttatgcaagcaaggctggataagaagatgacccag 420 || ||||||||||||||||| ||||||||||||||||| ||||||||||||||| Sbjct: 344 agtgacctgaagaaaaacctcatgcaagcaaggctggacaagaagatgacccag 397
>dbj|AK120339.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013060M10, full insert sequence Length = 823 Score = 321 bits (162), Expect = 1e-84 Identities = 261/294 (88%) Strand = Plus / Plus Query: 127 atggctgggattggtccgctcaggcaggactgggagccgatagtggtgcggaagagggcc 186 ||||| |||||||||||| |||||||||||||||||||| | ||||||||||||| ||| Sbjct: 107 atggccgggattggtccgatcaggcaggactgggagccggtggtggtgcggaagaaggcg 166 Query: 187 cagaacgccgcggacaagaaggacgaaaaggccgtcaacgctgcccgccgctccggcgcc 246 | | |||||| | ||||||||| || |||||||||||||| |||||||||||||||||| Sbjct: 167 cccaccgccgccgccaagaaggatgagaaggccgtcaacgccgcccgccgctccggcgcc 226 Query: 247 gagatcgacaccaccaagaagtataacgctggaacgaacaaggctgcatctagcggaact 306 |||||||| |||| |||||||||||||||||||| |||||||| || || || || || Sbjct: 227 gagatcgagaccatgaagaagtataacgctggaacaaacaaggcggcgtccagtggcaca 286 Query: 307 tccctcaacaccaagcggctcgacgacgacactgagaacctttcccatgagcgtgtttca 366 |||||||||||||||||||| || |||||||| |||| |||| ||||||||||||| ||| Sbjct: 287 tccctcaacaccaagcggctggatgacgacaccgagagccttgcccatgagcgtgtctca 346 Query: 367 agcgacctgaagaaaaaccttatgcaagcaaggctggataagaagatgacccag 420 || ||||||||||||||||| ||||||||||||||||| ||||||||||||||| Sbjct: 347 agtgacctgaagaaaaacctcatgcaagcaaggctggacaagaagatgacccag 400
>dbj|AK120022.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-186-C04, full insert sequence Length = 1727 Score = 321 bits (162), Expect = 1e-84 Identities = 261/294 (88%) Strand = Plus / Plus Query: 127 atggctgggattggtccgctcaggcaggactgggagccgatagtggtgcggaagagggcc 186 ||||| |||||||||||| |||||||||||||||||||| | ||||||||||||| ||| Sbjct: 104 atggccgggattggtccgatcaggcaggactgggagccggtggtggtgcggaagaaggcg 163 Query: 187 cagaacgccgcggacaagaaggacgaaaaggccgtcaacgctgcccgccgctccggcgcc 246 | | |||||| | ||||||||| || |||||||||||||| |||||||||||||||||| Sbjct: 164 cccaccgccgccgccaagaaggatgagaaggccgtcaacgccgcccgccgctccggcgcc 223 Query: 247 gagatcgacaccaccaagaagtataacgctggaacgaacaaggctgcatctagcggaact 306 |||||||| |||| |||||||||||||||||||| |||||||| || || || || || Sbjct: 224 gagatcgagaccatgaagaagtataacgctggaacaaacaaggcggcgtccagtggcaca 283 Query: 307 tccctcaacaccaagcggctcgacgacgacactgagaacctttcccatgagcgtgtttca 366 |||||||||||||||||||| || |||||||| |||| |||| ||||||||||||| ||| Sbjct: 284 tccctcaacaccaagcggctggatgacgacaccgagagccttgcccatgagcgtgtctca 343 Query: 367 agcgacctgaagaaaaaccttatgcaagcaaggctggataagaagatgacccag 420 || ||||||||||||||||| ||||||||||||||||| ||||||||||||||| Sbjct: 344 agtgacctgaagaaaaacctcatgcaagcaaggctggacaagaagatgacccag 397
>gb|AY106376.1| Zea mays PCO106666 mRNA sequence Length = 903 Score = 250 bits (126), Expect = 3e-63 Identities = 252/294 (85%) Strand = Plus / Plus Query: 127 atggctgggattggtccgctcaggcaggactgggagccgatagtggtgcggaagagggcc 186 ||||| ||||| || ||| |||||||||||||||||||| | || |||||||||| ||| Sbjct: 182 atggccgggatcgggccgatcaggcaggactgggagccggtggttgtgcggaagaaggca 241 Query: 187 cagaacgccgcggacaagaaggacgaaaaggccgtcaacgctgcccgccgctccggcgcc 246 | | |||||| | ||||||||| || |||||||||||||| || |||||||||||||| Sbjct: 242 cccaccgccgctgccaagaaggatgagaaggccgtcaacgccgcgcgccgctccggcgcg 301 Query: 247 gagatcgacaccaccaagaagtataacgctggaacgaacaaggctgcatctagcggaact 306 |||||||| |||| ||||||| |||||||| | ||||||||| || || ||||| || Sbjct: 302 gagatcgagaccatgaagaagttcaacgctggtatgaacaaggcggcgtccagcggcaca 361 Query: 307 tccctcaacaccaagcggctcgacgacgacactgagaacctttcccatgagcgtgtttca 366 ||||||||||||||||| |||||||||||||| |||||||| |||||||||| ||| || Sbjct: 362 tccctcaacaccaagcgcctcgacgacgacacagagaacctcgcccatgagcgagttcca 421 Query: 367 agcgacctgaagaaaaaccttatgcaagcaaggctggataagaagatgacccag 420 || |||||||||||||| || |||||||||||||| ||||||||| |||||||| Sbjct: 422 agtgacctgaagaaaaatctcatgcaagcaaggctcgataagaagttgacccag 475
>gb|BT018329.1| Zea mays clone EL01T0208G01.c mRNA sequence Length = 700 Score = 242 bits (122), Expect = 8e-61 Identities = 251/294 (85%) Strand = Plus / Plus Query: 127 atggctgggattggtccgctcaggcaggactgggagccgatagtggtgcggaagagggcc 186 ||||| ||||| || ||| |||| ||||||||||||||| | || |||||||||| ||| Sbjct: 114 atggccgggatcgggccgatcagacaggactgggagccggtggttgtgcggaagaaggca 173 Query: 187 cagaacgccgcggacaagaaggacgaaaaggccgtcaacgctgcccgccgctccggcgcc 246 | | |||||| | ||||||||| || |||||||||||||| || |||||||||||||| Sbjct: 174 cccaccgccgctgccaagaaggatgagaaggccgtcaacgccgcgcgccgctccggcgcg 233 Query: 247 gagatcgacaccaccaagaagtataacgctggaacgaacaaggctgcatctagcggaact 306 |||||||| |||| |||||||| |||||||| | ||||||||| || || ||||| || Sbjct: 234 gagatcgagaccatgaagaagtacaacgctggtatgaacaaggcggcgtccagcggcaca 293 Query: 307 tccctcaacaccaagcggctcgacgacgacactgagaacctttcccatgagcgtgtttca 366 ||||||||||||||||| |||||||| ||||| |||||||| |||||||||| ||| || Sbjct: 294 tccctcaacaccaagcgcctcgacgatgacacagagaacctcgcccatgagcgagttcca 353 Query: 367 agcgacctgaagaaaaaccttatgcaagcaaggctggataagaagatgacccag 420 || |||||||||||||| || |||||||||||||| ||||||||| |||||||| Sbjct: 354 agtgacctgaagaaaaatctcatgcaagcaaggctcgataagaagttgacccag 407
>gb|BT016361.1| Zea mays clone Contig194 mRNA sequence Length = 770 Score = 226 bits (114), Expect = 5e-56 Identities = 246/290 (84%) Strand = Plus / Plus Query: 127 atggctgggattggtccgctcaggcaggactgggagccgatagtggtgcggaagagggcc 186 ||||| ||||| || ||| |||||||||||||||||||| | || |||||||||| ||| Sbjct: 115 atggccgggatcggaccgatcaggcaggactgggagccggtcgttgtgcggaagaaggca 174 Query: 187 cagaacgccgcggacaagaaggacgaaaaggccgtcaacgctgcccgccgctccggcgcc 246 | | |||||| | ||||||||| || |||||||||||||| || |||||| |||| || Sbjct: 175 cccaccgccgccgccaagaaggatgagaaggccgtcaacgccgcgcgccgcgccggtgcg 234 Query: 247 gagatcgacaccaccaagaagtataacgctggaacgaacaaggctgcatctagcggaact 306 |||||||| |||| |||||||| |||||||| ||||||||||| ||||| ||||| || Sbjct: 235 gagatcgataccatgaagaagtacaacgctggtacgaacaaggcggcatccagcggtaca 294 Query: 307 tccctcaacaccaagcggctcgacgacgacactgagaacctttcccatgagcgtgtttca 366 ||||||||||||||||| |||||||||||||| || ||||| |||||||||| ||| || Sbjct: 295 tccctcaacaccaagcgcctcgacgacgacaccgaaaacctcgcccatgagcgagttcca 354 Query: 367 agcgacctgaagaaaaaccttatgcaagcaaggctggataagaagatgac 416 || || |||||||| || || |||||||||||||| ||||||||| |||| Sbjct: 355 agtgatctgaagaagaatctcatgcaagcaaggctcgataagaagctgac 404
>gb|AY103611.1| Zea mays PCO106667 mRNA sequence Length = 964 Score = 226 bits (114), Expect = 5e-56 Identities = 246/290 (84%) Strand = Plus / Plus Query: 127 atggctgggattggtccgctcaggcaggactgggagccgatagtggtgcggaagagggcc 186 ||||| ||||| || ||| |||||||||||||||||||| | || |||||||||| ||| Sbjct: 240 atggccgggatcggaccgatcaggcaggactgggagccggtcgttgtgcggaagaaggca 299 Query: 187 cagaacgccgcggacaagaaggacgaaaaggccgtcaacgctgcccgccgctccggcgcc 246 | | |||||| | ||||||||| || |||||||||||||| || |||||| |||| || Sbjct: 300 cccaccgccgccgccaagaaggatgagaaggccgtcaacgccgcgcgccgcgccggtgcg 359 Query: 247 gagatcgacaccaccaagaagtataacgctggaacgaacaaggctgcatctagcggaact 306 |||||||| |||| |||||||| |||||||| ||||||||||| ||||| ||||| || Sbjct: 360 gagatcgataccatgaagaagtacaacgctggtacgaacaaggcggcatccagcggtaca 419 Query: 307 tccctcaacaccaagcggctcgacgacgacactgagaacctttcccatgagcgtgtttca 366 ||||||||||||||||| |||||||||||||| || ||||| |||||||||| ||| || Sbjct: 420 tccctcaacaccaagcgcctcgacgacgacaccgaaaacctcgcccatgagcgagttcca 479 Query: 367 agcgacctgaagaaaaaccttatgcaagcaaggctggataagaagatgac 416 || || |||||||| || || |||||||||||||| ||||||||| |||| Sbjct: 480 agtgatctgaagaagaatctcatgcaagcaaggctcgataagaagctgac 529
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 147 bits (74), Expect = 3e-32 Identities = 125/142 (88%) Strand = Plus / Plus Query: 127 atggctgggattggtccgctcaggcaggactgggagccgatagtggtgcggaagagggcc 186 ||||| |||||||||||| |||||||||||||||||||| | ||||||||||||| ||| Sbjct: 16975143 atggccgggattggtccgatcaggcaggactgggagccggtggtggtgcggaagaaggcg 16975202 Query: 187 cagaacgccgcggacaagaaggacgaaaaggccgtcaacgctgcccgccgctccggcgcc 246 | | |||||| | ||||||||| || |||||||||||||| |||||||||||||||||| Sbjct: 16975203 cccaccgccgccgccaagaaggatgagaaggccgtcaacgccgcccgccgctccggcgcc 16975262 Query: 247 gagatcgacaccaccaagaagt 268 |||||||| |||| ||||||| Sbjct: 16975263 gagatcgagaccatgaagaagt 16975284 Score = 103 bits (52), Expect = 5e-19 Identities = 64/68 (94%) Strand = Plus / Plus Query: 353 atgagcgtgtttcaagcgacctgaagaaaaaccttatgcaagcaaggctggataagaaga 412 |||||||||| ||||| ||||||||||||||||| ||||||||||||||||| ||||||| Sbjct: 16977414 atgagcgtgtctcaagtgacctgaagaaaaacctcatgcaagcaaggctggacaagaaga 16977473 Query: 413 tgacccag 420 |||||||| Sbjct: 16977474 tgacccag 16977481 Score = 73.8 bits (37), Expect = 4e-10 Identities = 76/89 (85%) Strand = Plus / Plus Query: 269 ataacgctggaacgaacaaggctgcatctagcggaacttccctcaacaccaagcggctcg 328 ||||||||||||| |||||||| || || || || || |||||||||||||||||||| | Sbjct: 16975682 ataacgctggaacaaacaaggcggcgtccagtggcacatccctcaacaccaagcggctgg 16975741 Query: 329 acgacgacactgagaacctttcccatgag 357 | |||||||| |||| |||| ||| |||| Sbjct: 16975742 atgacgacaccgagagccttgcccgtgag 16975770
>dbj|AP004663.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0410E02 Length = 144294 Score = 147 bits (74), Expect = 3e-32 Identities = 125/142 (88%) Strand = Plus / Plus Query: 127 atggctgggattggtccgctcaggcaggactgggagccgatagtggtgcggaagagggcc 186 ||||| |||||||||||| |||||||||||||||||||| | ||||||||||||| ||| Sbjct: 10660 atggccgggattggtccgatcaggcaggactgggagccggtggtggtgcggaagaaggcg 10719 Query: 187 cagaacgccgcggacaagaaggacgaaaaggccgtcaacgctgcccgccgctccggcgcc 246 | | |||||| | ||||||||| || |||||||||||||| |||||||||||||||||| Sbjct: 10720 cccaccgccgccgccaagaaggatgagaaggccgtcaacgccgcccgccgctccggcgcc 10779 Query: 247 gagatcgacaccaccaagaagt 268 |||||||| |||| ||||||| Sbjct: 10780 gagatcgagaccatgaagaagt 10801 Score = 103 bits (52), Expect = 5e-19 Identities = 64/68 (94%) Strand = Plus / Plus Query: 353 atgagcgtgtttcaagcgacctgaagaaaaaccttatgcaagcaaggctggataagaaga 412 |||||||||| ||||| ||||||||||||||||| ||||||||||||||||| ||||||| Sbjct: 12931 atgagcgtgtctcaagtgacctgaagaaaaacctcatgcaagcaaggctggacaagaaga 12990 Query: 413 tgacccag 420 |||||||| Sbjct: 12991 tgacccag 12998 Score = 73.8 bits (37), Expect = 4e-10 Identities = 76/89 (85%) Strand = Plus / Plus Query: 269 ataacgctggaacgaacaaggctgcatctagcggaacttccctcaacaccaagcggctcg 328 ||||||||||||| |||||||| || || || || || |||||||||||||||||||| | Sbjct: 11199 ataacgctggaacaaacaaggcggcgtccagtggcacatccctcaacaccaagcggctgg 11258 Query: 329 acgacgacactgagaacctttcccatgag 357 | |||||||| |||| |||| ||| |||| Sbjct: 11259 atgacgacaccgagagccttgcccgtgag 11287
>dbj|AP003913.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1484_G09 Length = 124695 Score = 147 bits (74), Expect = 3e-32 Identities = 125/142 (88%) Strand = Plus / Plus Query: 127 atggctgggattggtccgctcaggcaggactgggagccgatagtggtgcggaagagggcc 186 ||||| |||||||||||| |||||||||||||||||||| | ||||||||||||| ||| Sbjct: 122154 atggccgggattggtccgatcaggcaggactgggagccggtggtggtgcggaagaaggcg 122213 Query: 187 cagaacgccgcggacaagaaggacgaaaaggccgtcaacgctgcccgccgctccggcgcc 246 | | |||||| | ||||||||| || |||||||||||||| |||||||||||||||||| Sbjct: 122214 cccaccgccgccgccaagaaggatgagaaggccgtcaacgccgcccgccgctccggcgcc 122273 Query: 247 gagatcgacaccaccaagaagt 268 |||||||| |||| ||||||| Sbjct: 122274 gagatcgagaccatgaagaagt 122295 Score = 103 bits (52), Expect = 5e-19 Identities = 64/68 (94%) Strand = Plus / Plus Query: 353 atgagcgtgtttcaagcgacctgaagaaaaaccttatgcaagcaaggctggataagaaga 412 |||||||||| ||||| ||||||||||||||||| ||||||||||||||||| ||||||| Sbjct: 124425 atgagcgtgtctcaagtgacctgaagaaaaacctcatgcaagcaaggctggacaagaaga 124484 Query: 413 tgacccag 420 |||||||| Sbjct: 124485 tgacccag 124492 Score = 73.8 bits (37), Expect = 4e-10 Identities = 76/89 (85%) Strand = Plus / Plus Query: 269 ataacgctggaacgaacaaggctgcatctagcggaacttccctcaacaccaagcggctcg 328 ||||||||||||| |||||||| || || || || || |||||||||||||||||||| | Sbjct: 122693 ataacgctggaacaaacaaggcggcgtccagtggcacatccctcaacaccaagcggctgg 122752 Query: 329 acgacgacactgagaacctttcccatgag 357 | |||||||| |||| |||| ||| |||| Sbjct: 122753 atgacgacaccgagagccttgcccgtgag 122781
>gb|AF232062.1|AF232062 Solanum tuberosum multiprotein bridging factor 1 mRNA, complete cds Length = 626 Score = 52.0 bits (26), Expect = 0.001 Identities = 35/38 (92%) Strand = Plus / Plus Query: 217 gccgtcaacgctgcccgccgctccggcgccgagatcga 254 ||||| ||||| ||||| |||||||||||||||||||| Sbjct: 105 gccgttaacgccgcccgtcgctccggcgccgagatcga 142
>emb|Z49698.1|RCJS21MR R.communis mRNA (unknown) Length = 674 Score = 50.1 bits (25), Expect = 0.006 Identities = 46/53 (86%) Strand = Plus / Plus Query: 202 aagaaggacgaaaaggccgtcaacgctgcccgccgctccggcgccgagatcga 254 ||||||||||| |||| |||||||||||| || ||| | || ||||||||||| Sbjct: 122 aagaaggacgagaaggtcgtcaacgctgctcgtcgcgctggtgccgagatcga 174
>dbj|AB072698.1| Nicotiana tabacum NtMBF1a mRNA for putative multiprotein bridging factor 1, complete cds Length = 703 Score = 46.1 bits (23), Expect = 0.091 Identities = 38/43 (88%) Strand = Plus / Plus Query: 217 gccgtcaacgctgcccgccgctccggcgccgagatcgacacca 259 ||||||||||| ||||| |||||||| || |||||||| |||| Sbjct: 149 gccgtcaacgccgcccgtcgctccggtgctgagatcgaaacca 191
>gb|AY509992.1| Malus x domestica cultivar Royal Gala sucrose phosphate phosphatase mRNA, complete cds Length = 1631 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 332 acgacactgagaacctttccc 352 ||||||||||||||||||||| Sbjct: 202 acgacactgagaacctttccc 222
>ref|NM_129829.2| Arabidopsis thaliana DNA binding / transcription coactivator AT2G42680 mRNA, complete cds Length = 692 Score = 42.1 bits (21), Expect = 1.4 Identities = 72/89 (80%) Strand = Plus / Plus Query: 274 gctggaacgaacaaggctgcatctagcggaacttccctcaacaccaagcggctcgacgac 333 |||||||| |||||||| ||||| ||||| || || || ||||| || ||| || || Sbjct: 217 gctggaaccaacaaggcggcatcaagcggcacatctctgaacacaaaaatgcttgatgat 276 Query: 334 gacactgagaacctttcccatgagcgtgt 362 ||||||||||||||| | ||||| ||||| Sbjct: 277 gacactgagaaccttactcatgaacgtgt 305
>ref|NM_115730.2| Arabidopsis thaliana DNA binding / transcription coactivator AT3G58680 mRNA, complete cds Length = 799 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 274 gctggaacgaacaaggctgcatctagcgg 302 |||||| |||||||||||||||| ||||| Sbjct: 239 gctggatcgaacaaggctgcatcaagcgg 267
>gb|AY223810.1| Rhodococcus erythropolis linear plasmid pBD2, complete sequence Length = 210205 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 243 cgccgagatcgacaccaccaa 263 ||||||||||||||||||||| Sbjct: 188853 cgccgagatcgacaccaccaa 188873
>gb|AY063014.1| Arabidopsis thaliana unknown protein (At2g42680) mRNA, complete cds Length = 460 Score = 42.1 bits (21), Expect = 1.4 Identities = 72/89 (80%) Strand = Plus / Plus Query: 274 gctggaacgaacaaggctgcatctagcggaacttccctcaacaccaagcggctcgacgac 333 |||||||| |||||||| ||||| ||||| || || || ||||| || ||| || || Sbjct: 148 gctggaaccaacaaggcggcatcaagcggcacatctctgaacacaaaaatgcttgatgat 207 Query: 334 gacactgagaacctttcccatgagcgtgt 362 ||||||||||||||| | ||||| ||||| Sbjct: 208 gacactgagaaccttactcatgaacgtgt 236
>gb|AF370280.1| Arabidopsis thaliana unknown protein (At2g42680) mRNA, complete cds Length = 703 Score = 42.1 bits (21), Expect = 1.4 Identities = 72/89 (80%) Strand = Plus / Plus Query: 274 gctggaacgaacaaggctgcatctagcggaacttccctcaacaccaagcggctcgacgac 333 |||||||| |||||||| ||||| ||||| || || || ||||| || ||| || || Sbjct: 212 gctggaaccaacaaggcggcatcaagcggcacatctctgaacacaaaaatgcttgatgat 271 Query: 334 gacactgagaacctttcccatgagcgtgt 362 ||||||||||||||| | ||||| ||||| Sbjct: 272 gacactgagaaccttactcatgaacgtgt 300
>gb|AF339728.1| Arabidopsis thaliana putative transcriptional coactivator protein (At3g58680) mRNA, complete cds Length = 479 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 274 gctggaacgaacaaggctgcatctagcgg 302 |||||| |||||||||||||||| ||||| Sbjct: 148 gctggatcgaacaaggctgcatcaagcgg 176
>gb|AF326909.1| Arabidopsis thaliana putative transcriptional coactivator protein (At3g58680) mRNA, complete cds Length = 741 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 274 gctggaacgaacaaggctgcatctagcgg 302 |||||| |||||||||||||||| ||||| Sbjct: 239 gctggatcgaacaaggctgcatcaagcgg 267
>gb|AE008743.2| Salmonella typhimurium LT2, section 49 of 220 of the complete genome Length = 62027 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 240 cggcgccgagatcgacaccaccaag 264 ||||||||||| ||||||||||||| Sbjct: 2374 cggcgccgagagcgacaccaccaag 2350
>emb|AL627268.1| Salmonella enterica serovar Typhi (Salmonella typhi) strain CT18, complete chromosome; segment 4/20 Length = 294050 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 240 cggcgccgagatcgacaccaccaag 264 ||||||||||| ||||||||||||| Sbjct: 238701 cggcgccgagagcgacaccaccaag 238677
>emb|AL353032.1|ATT20N10 Arabidopsis thaliana DNA chromosome 3, BAC clone T20N10 Length = 90273 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 274 gctggaacgaacaaggctgcatctagcgg 302 |||||| |||||||||||||||| ||||| Sbjct: 7803 gctggatcgaacaaggctgcatcaagcgg 7831
>gb|AC084072.13| Mus musculus strain 129S6/SvEvTac clone rp22-511i2, complete sequence Length = 114579 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 116 atcagggagatatggctgggattgg 140 |||||||||||||||||||| |||| Sbjct: 56945 atcagggagatatggctgggtttgg 56969
>gb|AY081487.1| Arabidopsis thaliana transcriptional coactivator-like protein (At3g58680) mRNA, complete cds Length = 607 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 274 gctggaacgaacaaggctgcatctagcgg 302 |||||| |||||||||||||||| ||||| Sbjct: 148 gctggatcgaacaaggctgcatcaagcgg 176
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 229 gcccgccgctccggcgccgag 249 ||||||||||||||||||||| Sbjct: 874543 gcccgccgctccggcgccgag 874563
>gb|AY042850.1| Arabidopsis thaliana transcriptional coactivator-like protein (T20N10_30) mRNA, complete cds Length = 724 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 274 gctggaacgaacaaggctgcatctagcgg 302 |||||| |||||||||||||||| ||||| Sbjct: 239 gctggatcgaacaaggctgcatcaagcgg 267
>gb|AF324717.2|AF324717 Arabidopsis thaliana AT3g58680 (AT3g58680/T20N10_30) mRNA, complete cds Length = 779 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 274 gctggaacgaacaaggctgcatctagcgg 302 |||||| |||||||||||||||| ||||| Sbjct: 293 gctggatcgaacaaggctgcatcaagcgg 321
>emb|BX819434.1|CNS0A8ZZ Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB77ZD12 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 688 Score = 42.1 bits (21), Expect = 1.4 Identities = 72/89 (80%) Strand = Plus / Plus Query: 274 gctggaacgaacaaggctgcatctagcggaacttccctcaacaccaagcggctcgacgac 333 |||||||| |||||||| ||||| ||||| || || || ||||| || ||| || || Sbjct: 203 gctggaaccaacaaggcggcatcaagcggcacatctctaaacacaaaaatgcttgatgat 262 Query: 334 gacactgagaacctttcccatgagcgtgt 362 ||||||||||||||| | ||||| ||||| Sbjct: 263 gacactgagaaccttactcatgaacgtgt 291
>emb|BX826065.1|CNS0A4ZW Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL82ZF11 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 671 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 274 gctggaacgaacaaggctgcatctagcgg 302 |||||| |||||||||||||||| ||||| Sbjct: 214 gctggatcgaacaaggctgcatcaagcgg 242
>gb|AY088140.1| Arabidopsis thaliana clone 41712 mRNA, complete sequence Length = 675 Score = 42.1 bits (21), Expect = 1.4 Identities = 72/89 (80%) Strand = Plus / Plus Query: 274 gctggaacgaacaaggctgcatctagcggaacttccctcaacaccaagcggctcgacgac 333 |||||||| |||||||| ||||| ||||| || || || ||||| || ||| || || Sbjct: 217 gctggaaccaacaaggcggcatcaagcggcacatctctgaacacaaaaatgcttgatgat 276 Query: 334 gacactgagaacctttcccatgagcgtgt 362 ||||||||||||||| | ||||| ||||| Sbjct: 277 gacactgagaaccttactcatgaacgtgt 305
>gb|AY084597.1| Arabidopsis thaliana clone 112835 mRNA, complete sequence Length = 726 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 274 gctggaacgaacaaggctgcatctagcgg 302 |||||| |||||||||||||||| ||||| Sbjct: 239 gctggatcgaacaaggctgcatcaagcgg 267
>gb|CP000026.1| Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150 Length = 4585229 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 240 cggcgccgagatcgacaccaccaag 264 ||||||||||| ||||||||||||| Sbjct: 1865300 cggcgccgagagcgacaccaccaag 1865324
>gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome Length = 4791961 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 240 cggcgccgagatcgacaccaccaag 264 ||||||||||| ||||||||||||| Sbjct: 1983376 cggcgccgagagcgacaccaccaag 1983400
>gb|AE017220.1| Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67, complete genome Length = 4755700 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 240 cggcgccgagatcgacaccaccaag 264 ||||||||||| ||||||||||||| Sbjct: 1072454 cggcgccgagagcgacaccaccaag 1072430
>emb|BX072536.4| Mouse DNA sequence from clone RP23-5A21 on chromosome X, complete sequence Length = 246587 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 116 atcagggagatatggctgggattgg 140 |||||||||||||||||||| |||| Sbjct: 22581 atcagggagatatggctgggtttgg 22605
>ref|XM_365829.1| Magnaporthe grisea 70-15 hypothetical protein (MG10049.4) partial mRNA Length = 654 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 230 cccgccgctccggcgccgag 249 |||||||||||||||||||| Sbjct: 395 cccgccgctccggcgccgag 376
>ref|XM_878913.1| PREDICTED: Bos taurus similar to G-protein coupled receptor 116, transcript variant 3 (LOC532674), mRNA Length = 5573 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 144 gctcaggcaggactgggagc 163 |||||||||||||||||||| Sbjct: 82 gctcaggcaggactgggagc 63
>ref|XM_611824.2| PREDICTED: Bos taurus similar to G-protein coupled receptor 116, transcript variant 1 (LOC532674), mRNA Length = 5390 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 144 gctcaggcaggactgggagc 163 |||||||||||||||||||| Sbjct: 82 gctcaggcaggactgggagc 63
>ref|XM_866654.1| PREDICTED: Bos taurus similar to G-protein coupled receptor 116, transcript variant 2 (LOC532674), mRNA Length = 5453 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 144 gctcaggcaggactgggagc 163 |||||||||||||||||||| Sbjct: 82 gctcaggcaggactgggagc 63
>gb|AC140316.3| Mus musculus BAC clone RP23-419L10 from chromosome 18, complete sequence Length = 195911 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 aaatatctcccctctctctc 31 |||||||||||||||||||| Sbjct: 48419 aaatatctcccctctctctc 48438
>gb|AC004921.2| Homo sapiens PAC clone RP5-899E9 from 7, complete sequence Length = 150332 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 375 gaagaaaaaccttatgcaag 394 |||||||||||||||||||| Sbjct: 126435 gaagaaaaaccttatgcaag 126454
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome Length = 4406967 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 157 tgggagccgatagtggtgcg 176 |||||||||||||||||||| Sbjct: 1007031 tgggagccgatagtggtgcg 1007050
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 243 cgccgagatcgacaccacca 262 |||||||||||||||||||| Sbjct: 136976 cgccgagatcgacaccacca 136957
>gb|AC133540.2| Homo sapiens chromosome 16 clone LA16c-352F7, complete sequence Length = 40695 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 375 gaagaaaaaccttatgcaag 394 |||||||||||||||||||| Sbjct: 2498 gaagaaaaaccttatgcaag 2479
>gb|AC115870.18| Mus musculus chromosome 1, clone RP24-339L17, complete sequence Length = 186963 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 307 tccctcaacaccaagcggct 326 |||||||||||||||||||| Sbjct: 44292 tccctcaacaccaagcggct 44273
>gb|AC092377.3| Homo sapiens chromosome 16 clone RP11-680G10, complete sequence Length = 207283 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 375 gaagaaaaaccttatgcaag 394 |||||||||||||||||||| Sbjct: 8383 gaagaaaaaccttatgcaag 8402
>gb|AC024094.28| Homo sapiens 4 RP11-193M13 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 161973 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 17 tctcccctctctctctagcgcctg 40 |||||||||||||||||| ||||| Sbjct: 20172 tctcccctctctctctagtgcctg 20149
>gb|AC147874.3| Monodelphis domestica clone VMRC6-639B11, complete sequence Length = 132290 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 9 ccaaaatatctcccctctct 28 |||||||||||||||||||| Sbjct: 3875 ccaaaatatctcccctctct 3894
>gb|AF127374.1|AF127374 Streptomyces lavendulae LinA homolog, cytochrome P450 hydroxylase ORF4, cytochrome P450 hydroxylase ORF3, MitT (mitT), MitS (mitS), MitR (mitR), MitQ (mitQ), MitP (mitP), MitO (mitO), MitN (mitN), MitM (mitM), MitL (mitL), MitK (mitK), MitJ (mitJ), MitI (mitI), MitH (mitH), MitG (mitG), MitF (mitF), MitE (mitE), MitD (mitD), MitC (mitC), MitB (mitB), MitA (mitA), MmcA (mmcA), MmcB (mmcB), MmcC (mmcC), MmcD (mmcD), MmcE (mmcE), MmcF (mmcF), MmcG (mmcG), MmcH (mmcH), MmcI (mmcI), MmcJ (mmcJ), MmcK (mmcK), MmcL (mmcL), MmcM (mmcM), MmcN (mmcN), MmcO (mmcO), Mrd (mrd), MmcP (mmcP), MmcQ (mmcQ), MmcR (mmcR), MmcS (mmcS), MmcT (mmcT), MmcU (mmcU), MmcV (mmcV), Mct (mct), MmcW (mmcW), MmcX (mmcX), and MmcY (mmcY) genes, complete cds; and unknown genes Length = 63734 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 225 cgctgcccgccgctccggcgccga 248 ||||||||||| |||||||||||| Sbjct: 7228 cgctgcccgcccctccggcgccga 7251
>gb|AC153595.27| Mus musculus 6 BAC RP23-140J24 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 225736 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 aaaatatctcccctctctct 30 |||||||||||||||||||| Sbjct: 13133 aaaatatctcccctctctct 13152
>gb|L05438.1|MUSIGFBP03 Mouse insulin-like growth factor binding protein 2 (IGFBP-2) gene, exon 3 Length = 425 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 307 tccctcaacaccaagcggct 326 |||||||||||||||||||| Sbjct: 140 tccctcaacaccaagcggct 121
>gb|DP000021.1| Monodelphis domestica target 1 genomic scaffold Length = 1833844 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 9 ccaaaatatctcccctctct 28 |||||||||||||||||||| Sbjct: 1048407 ccaaaatatctcccctctct 1048426 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,105,453 Number of Sequences: 3902068 Number of extensions: 3105453 Number of successful extensions: 63343 Number of sequences better than 10.0: 55 Number of HSP's better than 10.0 without gapping: 50 Number of HSP's successfully gapped in prelim test: 5 Number of HSP's that attempted gapping in prelim test: 62979 Number of HSP's gapped (non-prelim): 369 length of query: 420 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 398 effective length of database: 17,147,199,772 effective search space: 6824585509256 effective search space used: 6824585509256 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)