>EX5A_BUCAI (P57530) Exodeoxyribonuclease V alpha chain (EC 3.1.11.5)|
          Length = 602

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
 Frame = +3

Query: 426 MKLVRIIHYY*KQELGDS---IIIYVSRINYSSKRSYITLPGEYSSKFFCSFFST 581
           +K++R I +Y  Q +      +++  + ++Y S R YI+LP +Y  K +  FFS+
Sbjct: 11  LKIIRPIDFYFSQFIAQKNNIVMLVAACVSYESSRGYISLPIKYFEKHY--FFSS 63

>YTHD1_HUMAN (Q9BYJ9) YTH domain protein 1 (Dermatomyositis associated with|
           cancer putative autoantigen 1) (DACA-1)
          Length = 559

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = -3

Query: 263 NQHETPTICRQEHLSSYYMMSGCSPYAGDGKQWASAGS--TPYFSTLGSV*LQTNTDRH 93
           NQ  +       +LSSYY  S   PY+ +   W++AG    PY +T G +   +N D H
Sbjct: 43  NQSNSYPSMSDPYLSSYYPPSIGFPYSLNEAPWSTAGDPPIPYLTTYGQL---SNGDHH 98

>YTHD1_MOUSE (P59326) YTH domain protein 1 (Dermatomyositis associated with|
           cancer putative autoantigen 1 homolog) (DACA-1 homolog)
          Length = 559

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = -3

Query: 227 HLSSYYMMSGCSPYAGDGKQWASAGS--TPYFSTLGSV*LQTNTDRH 93
           +LSSYY  S   PY+     W++AG    PY +T G +   +N D H
Sbjct: 55  YLSSYYPPSIGFPYSLSEAPWSTAGDPPIPYLTTYGQL---SNGDHH 98

>Y567_BUCAP (Q8K902) Hypothetical transport protein BUsg567|
          Length = 413

 Score = 29.6 bits (65), Expect = 8.6
 Identities = 18/50 (36%), Positives = 28/50 (56%)
 Frame = +1

Query: 520 VLILLYRGSIHLNSFALFFQLIAYKLHLDIYFHNIYDSKTNLGYISNIML 669
           +LIL   G + + SF   F  I+Y+L L  +F     S +N+G++S I L
Sbjct: 240 LLILFAIGFMLMGSFITIFNYISYRLMLSPFFL----SSSNIGFLSIIYL 285


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,188,613
Number of Sequences: 219361
Number of extensions: 1893491
Number of successful extensions: 3848
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3848
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6484657212
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)