>NOP5_RAT (Q9QZ86) Nucleolar protein NOP5 (Nucleolar protein 5)|
           (Nopp140-associated protein)
          Length = 534

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 16/42 (38%), Positives = 25/42 (59%)
 Frame = -2

Query: 603 ESKERDKKKH*V**QMLKRKPLKESVPLVLHSLPSD*QKRKK 478
           + K++DKKKH      +K +PL E  P    ++PS  +K+KK
Sbjct: 491 KKKKKDKKKH------IKEEPLSEEEPCTSTAVPSPEKKKKK 526

>RNQ1_YEAST (P25367) [PIN+] prion protein RNQ1 (Rich in asparagine and|
           glutamine protein 1)
          Length = 405

 Score = 31.2 bits (69), Expect = 2.5
 Identities = 19/64 (29%), Positives = 28/64 (43%)
 Frame = +3

Query: 264 GMQNAAMFNNASHSNGNLSVFDEATMASLHDSKEFLNGSISSLGTGQQSQLAGGGLKAEQ 443
           G QN+  +NN  +  GN               +    G+ SSL +  QS L GG  ++ Q
Sbjct: 237 GNQNSQGYNNQQYQGGN---------GGYQQQQGQSGGAFSSLASMAQSYLGGGQTQSNQ 287

Query: 444 QEQN 455
           Q+ N
Sbjct: 288 QQYN 291

>QUAI_DROME (Q23989) Villin-like protein quail|
          Length = 887

 Score = 30.4 bits (67), Expect = 4.3
 Identities = 18/61 (29%), Positives = 27/61 (44%)
 Frame = -2

Query: 222 KEHFEMWNTESRLKKQLVHQQEKLKLHYHCFQLNWTRHEVVPEGQGYPTAGQKFQVLKCT 43
           +EH E+WNT   LKK++V Q  +L   Y  +  N                  KF++ KC 
Sbjct: 240 QEHKELWNTMLPLKKRMVCQASQLVSEYADYNSN------------------KFRIYKCN 281

Query: 42  E 40
           +
Sbjct: 282 Q 282

>VP2_CACV4 (O72121) VP2 protein|
          Length = 133

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 18/45 (40%), Positives = 22/45 (48%)
 Frame = +3

Query: 249 AFSFQGMQNAAMFNNASHSNGNLSVFDEATMASLHDSKEFLNGSI 383
           A   Q M +A   NN  +SNGN   F+E   A L   K F N S+
Sbjct: 89  AMRAQAMMDAGFRNNL-YSNGNQLTFNEVREAQLSAEKRFYNPSL 132

>PGCA_RAT (P07897) Aggrecan core protein precursor (Cartilage-specific|
            proteoglycan core protein) (CSPCP)
          Length = 2124

 Score = 29.6 bits (65), Expect = 7.4
 Identities = 23/82 (28%), Positives = 33/82 (40%)
 Frame = +3

Query: 288  NNASHSNGNLSVFDEATMASLHDSKEFLNGSISSLGTGQQSQLAGGGLKAEQQEQNTMCN 467
            + ++  +G +      T+  L    E L GS S+ GTG  S L  GG   E     T   
Sbjct: 865  SGSASGDGEIPWSSTPTVDRLPSGGESLEGSASASGTGDLSGLPSGGEITETSASGTEEI 924

Query: 468  IPLPSFVSASQMAVSEAQGALI 533
              LPS     + + S   GA +
Sbjct: 925  SGLPSGGDDLETSTSGIDGASV 946

>VMSA_WHV1 (P03143) Major surface antigen precursor|
          Length = 426

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -1

Query: 442 CSAFKPPPASCDCWPVP 392
           C   KP   +C CWP+P
Sbjct: 337 CCCLKPTAGNCTCWPIP 353

>PMP20_CHLPN (Q9Z812) Probable outer membrane protein pmp20 precursor (Polymorphic|
            membrane protein 20)
          Length = 1723

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 32/148 (21%), Positives = 55/148 (37%), Gaps = 5/148 (3%)
 Frame = +3

Query: 153  AFLADVQAVSSASTLCSTFQNVPSYMEPVSLEAF--SFQGMQNAAMFNNASHSN---GNL 317
            A + +     S S   +T      Y + + L+A   SF    N    +  + +N   G +
Sbjct: 822  ALILEKVITGSVSQNTATESGGGIYAKDIQLQALPGSFTITDNKVETSLTTSTNLYGGGI 881

Query: 318  SVFDEATMASLHDSKEFLNGSISSLGTGQQSQLAGGGLKAEQQEQNTMCNIPLPSFVSAS 497
                  T+ ++  +      S+ +  T Q + + GGG+ A        CN P+  F + S
Sbjct: 882  YSSGAVTLTNISGTFGITGNSVINTATSQDADIQGGGIYATTSLSINQCNTPI-LFSNNS 940

Query: 498  QMAVSEAQGALIPSKVFFLASVIILNVS 581
                  +    I     F A+V I N S
Sbjct: 941  AATKKTSTTKQIAGGAIFSAAVTIENNS 968

>VMSA_WHV8 (P17400) Major surface antigen precursor|
          Length = 431

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -1

Query: 442 CSAFKPPPASCDCWPVP 392
           C   KP   +C CWP+P
Sbjct: 342 CCCLKPTAGNCTCWPIP 358

>VMSA_WHV7 (P12909) Major surface antigen precursor|
          Length = 431

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -1

Query: 442 CSAFKPPPASCDCWPVP 392
           C   KP   +C CWP+P
Sbjct: 342 CCCLKPTAGNCTCWPIP 358

>VMSA_WHV59 (P12910) Major surface antigen precursor|
          Length = 431

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -1

Query: 442 CSAFKPPPASCDCWPVP 392
           C   KP   +C CWP+P
Sbjct: 342 CCCLKPTAGNCTCWPIP 358

>VMSA_WHV2 (P06432) Major surface antigen precursor|
          Length = 431

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -1

Query: 442 CSAFKPPPASCDCWPVP 392
           C   KP   +C CWP+P
Sbjct: 342 CCCLKPTAGNCTCWPIP 358

>VMSA_HPBGS (P03144) Major surface antigen precursor|
          Length = 428

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -1

Query: 442 CSAFKPPPASCDCWPVP 392
           C   KP   +C CWP+P
Sbjct: 339 CCCLKPTAGNCTCWPIP 355

>VMSA_WHVW6 (P11293) Major surface antigen precursor|
          Length = 282

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -1

Query: 442 CSAFKPPPASCDCWPVP 392
           C   KP   +C CWP+P
Sbjct: 193 CCCLKPTAGNCTCWPIP 209


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,408,861
Number of Sequences: 219361
Number of extensions: 1768502
Number of successful extensions: 4928
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 4773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4927
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5596027262
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)