Clone Information

BLAST Search Result

Clone Name	baal14c13
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	emb\|AJ495770.1\|HVU495770 Hordeum vulgare partial mRNA for putati...	117	4e-23
2	ref\|NM_192641.1\| Oryza sativa (japonica cultivar-group), predic...	88	3e-14
3	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	88	3e-14
4	dbj\|AP003330.4\| Oryza sativa (japonica cultivar-group) genomic D...	88	3e-14
5	dbj\|AP003278.5\| Oryza sativa (japonica cultivar-group) genomic D...	88	3e-14
6	ref\|NM_192667.1\| Oryza sativa (japonica cultivar-group), predic...	58	3e-05
7	dbj\|AP003022.2\| Oryza sativa (japonica cultivar-group) genomic D...	58	3e-05
8	emb\|AM167520.1\| Malus x domestica transposon gene for putative D...	56	1e-04
9	dbj\|AP008218.1\| Oryza sativa (japonica cultivar-group) genomic D...	52	0.002
10	gb\|DP000011.1\| Oryza sativa (japonica cultivar-group) chromosome...	52	0.002
11	emb\|AL731739.4\|CNS08C7O Oryza sativa chromosome 12, . BAC OSJNBa...	52	0.002
12	gb\|AY534123.1\|SEG_AY534122S2 Aegilops tauschii transposons Caspa...	48	0.029
13	gb\|AC120889.3\| Oryza sativa (japonica cultivar-group) chromosome...	46	0.11
14	gb\|AC133291.2\| Oryza sativa (japonica cultivar-group) chromosome...	46	0.11
15	dbj\|AP008217.1\| Oryza sativa (japonica cultivar-group) genomic D...	46	0.11
16	dbj\|AK120272.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	46	0.11
17	gb\|DP000010.1\| Oryza sativa (japonica cultivar-group) chromosome...	46	0.11
18	gb\|AC162614.2\| Mus musculus chromosome 7, clone RP23-421O10, com...	44	0.45
19	dbj\|AK042846.1\| Mus musculus 7 days neonate cerebellum cDNA, RIK...	44	0.45
20	gb\|AC124981.25\| Mus musculus chromosome 5, clone RP24-170P20, co...	42	1.8
21	gb\|AC163108.5\| Mus musculus BAC clone RP23-46L17 from chromosome...	42	1.8
22	gb\|AE006017.1\| Caulobacter crescentus CB15 section 343 of 359 of...	42	1.8
23	gb\|AC160395.2\| Mus musculus BAC clone RP23-36C19 from chromosome...	42	1.8
24	gb\|AC159282.2\| Mus musculus BAC clone RP23-329M17 from chromosom...	42	1.8
25	emb\|BX957317.12\| Zebrafish DNA sequence from clone DKEY-150K17 i...	42	1.8
26	gb\|AC167333.3\| Mus musculus BAC clone RP23-92L4 from chromosome ...	42	1.8
27	ref\|NM_116269.3\| Arabidopsis thaliana unknown protein AT4G00440 ...	40	7.0
28	gb\|AC106595.9\| Rattus norvegicus 7 BAC CH230-237N20 (Children's ...	40	7.0
29	emb\|CR381540.16\| Zebrafish DNA sequence from clone CH211-153B23 ...	40	7.0
30	emb\|AL161472.2\|ATCHRIV2 Arabidopsis thaliana DNA chromosome 4, c...	40	7.0
31	emb\|AL161471.2\|ATCHRIV1 Arabidopsis thaliana DNA chromosome 4, c...	40	7.0
32	gb\|BT008655.1\| Arabidopsis thaliana clone RAFL09-89-D06 (R19838)...	40	7.0
33	emb\|AL627261.10\| Zebrafish DNA sequence from clone RP71-1N11 in ...	40	7.0
34	emb\|BX470202.7\| Zebrafish DNA sequence from clone CH211-283J22 i...	40	7.0
35	gb\|AC009806.9\| Homo sapiens chromosome 11, clone RP11-51B23, com...	40	7.0
36	gb\|AC073855.5\| Homo sapiens BAC clone RP11-799A12 from 4, comple...	40	7.0
37	emb\|BX323602.7\| Zebrafish DNA sequence from clone RP71-61H23, co...	40	7.0
38	dbj\|AK221998.1\| Arabidopsis thaliana mRNA for hypothetical prote...	40	7.0
39	emb\|BX601643.6\| Zebrafish DNA sequence from clone DKEY-32B18 in ...	40	7.0
40	emb\|BX826876.1\|CNS0A3AN Arabidopsis thaliana Full-length cDNA Co...	40	7.0
41	gb\|AF195115.1\|F5I10 Arabidopsis thaliana BAC F5I10	40	7.0
42	emb\|BX000361.8\| Zebrafish DNA sequence from clone DKEY-181F18 in...	40	7.0
43	gb\|AF013293.1\|IG005I10 Arabidopsis thaliana BAC IG005I10	40	7.0
44	dbj\|AP001866.3\| Homo sapiens genomic DNA, chromosome 4q22-q24, c...	40	7.0

>emb|AJ495770.1|HVU495770 Hordeum vulgare partial mRNA for putative Cf2/Cf5 disease
           resistance protein
          Length = 648

 Score =  117 bits (59), Expect = 4e-23
 Identities = 131/155 (84%)
 Strand = Plus / Plus

                                                                       
Query: 144 tgcatcaccagggagcgggaggcgcttctgtccttcaaggcagaccttctggaccctgct 203
           ||||||| ||| ||||| || || ||||||||||||||||||  ||| ||||||||||||
Sbjct: 59  tgcatcagcagcgagcgagacgcacttctgtccttcaaggcaagcctcctggaccctgct 118

                                                                       
Query: 204 ggccgtctctcgtcatggcacggggaagattgctgtcagtgggagggaatacggtgcagc 263
           |||| ||||||||||||||| || || ||||| || || ||| ||||| | || || |||
Sbjct: 119 ggccatctctcgtcatggcagggtgaggattgttgccaatggaagggagtccgctgtagc 178

                                              
Query: 264 aacagaacaggccatgtcataaagctcgacctccg 298
           |||||||| |||||| |||| |||||| |||||||
Sbjct: 179 aacagaacgggccatctcatcaagctcaacctccg 213



 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 117/140 (83%)
 Strand = Plus / Plus

                                                                       
Query: 363 agcttgtcgagaggtgagatgagctcctctttgactgctttgcaacaattgagatatctt 422
           |||||||||  |||| |||||||||| |||||| || |||| |||||  |||||||||||
Sbjct: 284 agcttgtcggtaggtcagatgagctcttctttggctactttacaacacctgagatatctt 343

                                                                       
Query: 423 gatcttagtgggaatgtattcaatggcactagcatacctgtgtttatgggctctctggag 482
           ||||| ||| ||||||  ||||| ||||| ||||| ||||| ||| |||  |||||  ||
Sbjct: 344 gatctgagttggaatgacttcaagggcacaagcatccctgtctttttggcttctctcaag 403

                               
Query: 483 aacctaaggtacctcgacct 502
           ||||||||||||||| ||||
Sbjct: 404 aacctaaggtacctcaacct 423

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>ref|NM_192641.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3291

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 98/116 (84%)
 Strand = Plus / Plus

                                                                       
Query: 156 gagcgggaggcgcttctgtccttcaaggcagaccttctggaccctgctggccgtctctcg 215
           ||||| || ||||| || ||||||||||||  ||||||||||||| ||||| | || |||
Sbjct: 106 gagcgtgatgcgctgctctccttcaaggcaagccttctggacccttctggcaggctgtcg 165

                                                                   
Query: 216 tcatggcacggggaagattgctgtcagtgggagggaatacggtgcagcaacagaac 271
           |||||||| || || || ||||| |||||| ||||| | |||||||||||||||||
Sbjct: 166 tcatggcagggtgacgactgctgccagtggaagggagtccggtgcagcaacagaac 221



 Score = 48.1 bits (24), Expect = 0.029
 Identities = 84/104 (80%)
 Strand = Plus / Plus

                                                                       
Query: 373 gaggtgagatgagctcctctttgactgctttgcaacaattgagatatcttgatcttagtg 432
           |||||||  ||||||||||||||| |||||| || ||  ||||  |||| ||||| ||| 
Sbjct: 329 gaggtgaattgagctcctctttgattgctttacatcatctgaggcatctcgatctgagtt 388

                                                       
Query: 433 ggaatgtattcaatggcactagcatacctgtgtttatgggctct 476
           | ||| | ||||| || || ||||||||||| || |||||||||
Sbjct: 389 gcaatttcttcaacggaacgagcatacctgttttcatgggctct 432

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 98/116 (84%)
 Strand = Plus / Minus

                                                                            
Query: 156      gagcgggaggcgcttctgtccttcaaggcagaccttctggaccctgctggccgtctctcg 215
                ||||| || ||||| || ||||||||||||  ||||||||||||| ||||| | || |||
Sbjct: 23631381 gagcgtgatgcgctgctctccttcaaggcaagccttctggacccttctggcaggctgtcg 23631322

                                                                        
Query: 216      tcatggcacggggaagattgctgtcagtgggagggaatacggtgcagcaacagaac 271
                |||||||| || || || ||||| |||||| ||||| | |||||||||||||||||
Sbjct: 23631321 tcatggcagggtgacgactgctgccagtggaagggagtccggtgcagcaacagaac 23631266



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 44/49 (89%)
 Strand = Plus / Plus

                                                                 
Query: 256      ggtgcagcaacagaacaggccatgtcataaagctcgacctccggaacac 304
                ||||||||||||| || ||||||||| | |||||||||||||| |||||
Sbjct: 23784297 ggtgcagcaacaggaccggccatgtcgtcaagctcgacctccgcaacac 23784345



 Score = 48.1 bits (24), Expect = 0.029
 Identities = 84/104 (80%)
 Strand = Plus / Minus

                                                                            
Query: 373      gaggtgagatgagctcctctttgactgctttgcaacaattgagatatcttgatcttagtg 432
                |||||||  ||||||||||||||| |||||| || ||  ||||  |||| ||||| ||| 
Sbjct: 23631158 gaggtgaattgagctcctctttgattgctttacatcatctgaggcatctcgatctgagtt 23631099

                                                            
Query: 433      ggaatgtattcaatggcactagcatacctgtgtttatgggctct 476
                | ||| | ||||| || || ||||||||||| || |||||||||
Sbjct: 23631098 gcaatttcttcaacggaacgagcatacctgttttcatgggctct 23631055

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>dbj|AP003330.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
            clone:B1085F01
          Length = 163671

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 98/116 (84%)
 Strand = Plus / Minus

                                                                        
Query: 156  gagcgggaggcgcttctgtccttcaaggcagaccttctggaccctgctggccgtctctcg 215
            ||||| || ||||| || ||||||||||||  ||||||||||||| ||||| | || |||
Sbjct: 9085 gagcgtgatgcgctgctctccttcaaggcaagccttctggacccttctggcaggctgtcg 9026

                                                                    
Query: 216  tcatggcacggggaagattgctgtcagtgggagggaatacggtgcagcaacagaac 271
            |||||||| || || || ||||| |||||| ||||| | |||||||||||||||||
Sbjct: 9025 tcatggcagggtgacgactgctgccagtggaagggagtccggtgcagcaacagaac 8970



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 44/49 (89%)
 Strand = Plus / Plus

                                                               
Query: 256    ggtgcagcaacagaacaggccatgtcataaagctcgacctccggaacac 304
              ||||||||||||| || ||||||||| | |||||||||||||| |||||
Sbjct: 162001 ggtgcagcaacaggaccggccatgtcgtcaagctcgacctccgcaacac 162049



 Score = 48.1 bits (24), Expect = 0.029
 Identities = 84/104 (80%)
 Strand = Plus / Minus

                                                                        
Query: 373  gaggtgagatgagctcctctttgactgctttgcaacaattgagatatcttgatcttagtg 432
            |||||||  ||||||||||||||| |||||| || ||  ||||  |||| ||||| ||| 
Sbjct: 8862 gaggtgaattgagctcctctttgattgctttacatcatctgaggcatctcgatctgagtt 8803

                                                        
Query: 433  ggaatgtattcaatggcactagcatacctgtgtttatgggctct 476
            | ||| | ||||| || || ||||||||||| || |||||||||
Sbjct: 8802 gcaatttcttcaacggaacgagcatacctgttttcatgggctct 8759

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>dbj|AP003278.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0518F01
          Length = 154541

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 98/116 (84%)
 Strand = Plus / Minus

                                                                         
Query: 156   gagcgggaggcgcttctgtccttcaaggcagaccttctggaccctgctggccgtctctcg 215
             ||||| || ||||| || ||||||||||||  ||||||||||||| ||||| | || |||
Sbjct: 94080 gagcgtgatgcgctgctctccttcaaggcaagccttctggacccttctggcaggctgtcg 94021

                                                                     
Query: 216   tcatggcacggggaagattgctgtcagtgggagggaatacggtgcagcaacagaac 271
             |||||||| || || || ||||| |||||| ||||| | |||||||||||||||||
Sbjct: 94020 tcatggcagggtgacgactgctgccagtggaagggagtccggtgcagcaacagaac 93965



 Score = 48.1 bits (24), Expect = 0.029
 Identities = 84/104 (80%)
 Strand = Plus / Minus

                                                                         
Query: 373   gaggtgagatgagctcctctttgactgctttgcaacaattgagatatcttgatcttagtg 432
             |||||||  ||||||||||||||| |||||| || ||  ||||  |||| ||||| ||| 
Sbjct: 93857 gaggtgaattgagctcctctttgattgctttacatcatctgaggcatctcgatctgagtt 93798

                                                         
Query: 433   ggaatgtattcaatggcactagcatacctgtgtttatgggctct 476
             | ||| | ||||| || || ||||||||||| || |||||||||
Sbjct: 93797 gcaatttcttcaacggaacgagcatacctgttttcatgggctct 93754

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>ref|NM_192667.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1788

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 44/49 (89%)
 Strand = Plus / Plus

                                                            
Query: 256 ggtgcagcaacagaacaggccatgtcataaagctcgacctccggaacac 304
           ||||||||||||| || ||||||||| | |||||||||||||| |||||
Sbjct: 227 ggtgcagcaacaggaccggccatgtcgtcaagctcgacctccgcaacac 275

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>dbj|AP003022.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0681B11
          Length = 144091

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 44/49 (89%)
 Strand = Plus / Plus

                                                              
Query: 256   ggtgcagcaacagaacaggccatgtcataaagctcgacctccggaacac 304
             ||||||||||||| || ||||||||| | |||||||||||||| |||||
Sbjct: 64882 ggtgcagcaacaggaccggccatgtcgtcaagctcgacctccgcaacac 64930

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>emb|AM167520.1| Malus x domestica transposon gene for putative DNA topoisomerase II,
             hypothetical protein, putative CC-NBS-LRR resistance
             protein, and putative cyclin-related protein
          Length = 104559

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 31/32 (96%)
 Strand = Plus / Minus

                                             
Query: 406   aacaattgagatatcttgatcttagtgggaat 437
             |||| |||||||||||||||||||||||||||
Sbjct: 55768 aacatttgagatatcttgatcttagtgggaat 55737



 Score = 48.1 bits (24), Expect = 0.029
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                         
Query: 406   aacaattgagatatcttgatcttagtgg 433
             |||| |||||||||||||||||||||||
Sbjct: 32228 aacatttgagatatcttgatcttagtgg 32201



 Score = 40.1 bits (20), Expect = 7.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 406   aacaattgagatatcttgatcttagtgg 433
             |||| ||||||||||||||||| |||||
Sbjct: 87375 aacatttgagatatcttgatctcagtgg 87348

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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                                  
Query: 256      ggtgcagcaacagaacaggccatgtcataaagct 289
                |||||||||||||||| ||||||||||| |||||
Sbjct: 10060377 ggtgcagcaacagaaccggccatgtcatcaagct 10060344



 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 372      agaggtgagatgagctcctctttg 395
                |||||||||||||||| |||||||
Sbjct: 10060291 agaggtgagatgagctactctttg 10060268

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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                                  
Query: 256      ggtgcagcaacagaacaggccatgtcataaagct 289
                |||||||||||||||| ||||||||||| |||||
Sbjct: 10060262 ggtgcagcaacagaaccggccatgtcatcaagct 10060229



 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 372      agaggtgagatgagctcctctttg 395
                |||||||||||||||| |||||||
Sbjct: 10060176 agaggtgagatgagctactctttg 10060153

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>emb|AL731739.4|CNS08C7O Oryza sativa chromosome 12, . BAC OSJNBa0056I18 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 145890

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                                
Query: 256    ggtgcagcaacagaacaggccatgtcataaagct 289
              |||||||||||||||| ||||||||||| |||||
Sbjct: 102244 ggtgcagcaacagaaccggccatgtcatcaagct 102277



 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 372    agaggtgagatgagctcctctttg 395
              |||||||||||||||| |||||||
Sbjct: 102330 agaggtgagatgagctactctttg 102353

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>gb|AY534123.1|SEG_AY534122S2 Aegilops tauschii transposons Caspar, XJ, Angela, and XJ, complete
              sequence; LRR protein WM1.7 (WM1.7) and LRR protein WM1.12
              (WM1.12) genes, complete cds; transposons Ophelia2,
              Angela3s, and XJ3, complete sequence; LRR protein WM1.3
              (WM1.3) gene, complete cds; Stowaway MITE, transposons XJ1,
              Jody, Angela, and XJ and Stowaway MITE, complete sequence;
              LRR protein WM1.2 (WM1.2) and LLR protein WM1.1 (WM1.1)
              genes, complete cds; transposons XJ, XA, Angela, and Fred
              and WM1.11 gene, complete sequence; RPM1-like sequence and
              LRR protein WM1.10 (WM1.10) genes, complete cds; and
              transposon XJ, complete sequence
          Length = 198649

 Score = 48.1 bits (24), Expect = 0.029
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                              
Query: 258    tgcagcaacagaacaggccatgtcataaagct 289
              ||||||||| |||||||||||||||| |||||
Sbjct: 190883 tgcagcaaccgaacaggccatgtcatcaagct 190852



 Score = 48.1 bits (24), Expect = 0.029
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                              
Query: 258    tgcagcaacagaacaggccatgtcataaagct 289
              ||||||||| |||||||||||||||| |||||
Sbjct: 109389 tgcagcaaccgaacaggccatgtcatcaagct 109420



 Score = 48.1 bits (24), Expect = 0.029
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                             
Query: 258   tgcagcaacagaacaggccatgtcataaagct 289
             ||||||||| |||||||||||||||| |||||
Sbjct: 37833 tgcagcaaccgaacaggccatgtcatcaagct 37864



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                               
Query: 258    tgcagcaacagaacaggccatgtcataaagctc 290
              ||||||||| |||| ||||||||||| ||||||
Sbjct: 138651 tgcagcaaccgaactggccatgtcatcaagctc 138619

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>gb|AC120889.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0018K14,
              complete sequence
          Length = 152725

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                 
Query: 255    cggtgcagcaacagaacaggccatgtcataaagct 289
              |||||||||||||| || ||||||||||| |||||
Sbjct: 121985 cggtgcagcaacaggaccggccatgtcatcaagct 122019

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>gb|AC133291.2| Oryza sativa (japonica cultivar-group) chromosome 11 PAC clone
             P0542B04, complete sequence
          Length = 182823

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                
Query: 255   cggtgcagcaacagaacaggccatgtcataaagct 289
             |||||||||||||| || ||||||||||| |||||
Sbjct: 22029 cggtgcagcaacaggaccggccatgtcatcaagct 22063

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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                   
Query: 255      cggtgcagcaacagaacaggccatgtcataaagct 289
                |||||||||||||| || ||||||||||| |||||
Sbjct: 20202827 cggtgcagcaacaggaccggccatgtcatcaagct 20202861

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>dbj|AK120272.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013047P10, full
            insert sequence
          Length = 6557

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 255  cggtgcagcaacagaacaggccatgtcataaagct 289
            |||||||||||||| || ||||||||||| |||||
Sbjct: 6046 cggtgcagcaacaggaccggccatgtcatcaagct 6012

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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                   
Query: 255      cggtgcagcaacagaacaggccatgtcataaagct 289
                |||||||||||||| || ||||||||||| |||||
Sbjct: 20487756 cggtgcagcaacaggaccggccatgtcatcaagct 20487790

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>gb|AC162614.2| Mus musculus chromosome 7, clone RP23-421O10, complete sequence
          Length = 219414

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 64     caattctctgcctgttgatttt 85
              ||||||||||||||||||||||
Sbjct: 180542 caattctctgcctgttgatttt 180521

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>dbj|AK042846.1| Mus musculus 7 days neonate cerebellum cDNA, RIKEN full-length
           enriched library, clone:A730030E01
           product:unclassifiable, full insert sequence
          Length = 2229

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 64  caattctctgcctgttgatttt 85
           ||||||||||||||||||||||
Sbjct: 642 caattctctgcctgttgatttt 663

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>gb|AC124981.25| Mus musculus chromosome 5, clone RP24-170P20, complete sequence
          Length = 153767

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 7     ttcctcgtggtaccaatatggctgc 31
             ||||||||||||||||| |||||||
Sbjct: 10533 ttcctcgtggtaccaatctggctgc 10509

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>gb|AC163108.5| Mus musculus BAC clone RP23-46L17 from chromosome 6, complete sequence
          Length = 234330

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 386   ctcctctttgactgctttgca 406
             |||||||||||||||||||||
Sbjct: 98683 ctcctctttgactgctttgca 98663

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>gb|AE006017.1| Caulobacter crescentus CB15 section 343 of 359 of the complete genome
          Length = 10135

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 39   gggcatctcgcccgagcagctgcag 63
            |||| ||||||||||||||||||||
Sbjct: 9147 gggcttctcgcccgagcagctgcag 9171

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>gb|AC160395.2| Mus musculus BAC clone RP23-36C19 from chromosome 12, complete sequence
          Length = 207840

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 67    ttctctgcctgttgattttcc 87
             |||||||||||||||||||||
Sbjct: 11729 ttctctgcctgttgattttcc 11709

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>gb|AC159282.2| Mus musculus BAC clone RP23-329M17 from chromosome 12, complete sequence
          Length = 210571

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 67     ttctctgcctgttgattttcc 87
              |||||||||||||||||||||
Sbjct: 168813 ttctctgcctgttgattttcc 168793

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>emb|BX957317.12| Zebrafish DNA sequence from clone DKEY-150K17 in linkage group 19,
             complete sequence
          Length = 222684

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                              
Query: 260   cagcaacagaacaggccatgtcataaagctcga 292
             ||||| || |||| |||||||||||||||||||
Sbjct: 14265 cagcagcataacatgccatgtcataaagctcga 14233

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>gb|AC167333.3| Mus musculus BAC clone RP23-92L4 from chromosome 5, complete sequence
          Length = 236596

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 7      ttcctcgtggtaccaatatggctgc 31
              ||||||||||||||||| |||||||
Sbjct: 148489 ttcctcgtggtaccaatctggctgc 148465

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>ref|NM_116269.3| Arabidopsis thaliana unknown protein AT4G00440 mRNA, complete cds
          Length = 3802

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 381  atgagctcctctttgactgc 400
            ||||||||||||||||||||
Sbjct: 2966 atgagctcctctttgactgc 2985

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>gb|AC106595.9| Rattus norvegicus 7 BAC CH230-237N20 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 214961

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 378   gagatgagctcctctttgac 397
             ||||||||||||||||||||
Sbjct: 13812 gagatgagctcctctttgac 13831

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>emb|CR381540.16| Zebrafish DNA sequence from clone CH211-153B23 in linkage group 14,
             complete sequence
          Length = 167095

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 444   aatggcactagcatacctgtgttt 467
             |||||||||||||| |||||||||
Sbjct: 43330 aatggcactagcatgcctgtgttt 43353

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>emb|AL161472.2|ATCHRIV2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 2
          Length = 197975

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 381  atgagctcctctttgactgc 400
            ||||||||||||||||||||
Sbjct: 4624 atgagctcctctttgactgc 4643

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>emb|AL161471.2|ATCHRIV1 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 1
          Length = 197119

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 381    atgagctcctctttgactgc 400
              ||||||||||||||||||||
Sbjct: 196743 atgagctcctctttgactgc 196762

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>gb|BT008655.1| Arabidopsis thaliana clone RAFL09-89-D06 (R19838) unknown protein
            (At4g00440) mRNA, complete cds
          Length = 3818

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 381  atgagctcctctttgactgc 400
            ||||||||||||||||||||
Sbjct: 2965 atgagctcctctttgactgc 2984

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>emb|AL627261.10| Zebrafish DNA sequence from clone RP71-1N11 in linkage group 9
            Contains three CpG islands, complete sequence
          Length = 147392

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 269  aacaggccatgtcataaagctcga 292
            |||| |||||||||||||||||||
Sbjct: 9899 aacacgccatgtcataaagctcga 9922

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>emb|BX470202.7| Zebrafish DNA sequence from clone CH211-283J22 in linkage group 18,
             complete sequence
          Length = 133410

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 269   aacaggccatgtcataaagc 288
             ||||||||||||||||||||
Sbjct: 54262 aacaggccatgtcataaagc 54243

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>gb|AC009806.9| Homo sapiens chromosome 11, clone RP11-51B23, complete sequence
          Length = 175223

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 53    agcagctgcagcaattctct 72
             ||||||||||||||||||||
Sbjct: 33846 agcagctgcagcaattctct 33865

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>gb|AC073855.5| Homo sapiens BAC clone RP11-799A12 from 4, complete sequence
          Length = 193024

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 66     attctctgcctgttgatttt 85
              ||||||||||||||||||||
Sbjct: 119135 attctctgcctgttgatttt 119116

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>emb|BX323602.7| Zebrafish DNA sequence from clone RP71-61H23, complete sequence
          Length = 156514

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 269    aacaggccatgtcataaagctcga 292
              |||| |||||||||||||||||||
Sbjct: 121238 aacatgccatgtcataaagctcga 121215

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>dbj|AK221998.1| Arabidopsis thaliana mRNA for hypothetical protein, partial cds,
           clone: RAFL22-62-L02
          Length = 1764

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 381 atgagctcctctttgactgc 400
           ||||||||||||||||||||
Sbjct: 972 atgagctcctctttgactgc 991

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>emb|BX601643.6| Zebrafish DNA sequence from clone DKEY-32B18 in linkage group 9,
             complete sequence
          Length = 165857

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 269   aacaggccatgtcataaagctcga 292
             |||| |||||||||||||||||||
Sbjct: 18866 aacacgccatgtcataaagctcga 18889

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>emb|BX826876.1|CNS0A3AN Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB71ZE05 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1417

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 381 atgagctcctctttgactgc 400
           ||||||||||||||||||||
Sbjct: 650 atgagctcctctttgactgc 669

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>gb|AF195115.1|F5I10 Arabidopsis thaliana BAC F5I10
          Length = 111906

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 381   atgagctcctctttgactgc 400
             ||||||||||||||||||||
Sbjct: 97262 atgagctcctctttgactgc 97281

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>emb|BX000361.8| Zebrafish DNA sequence from clone DKEY-181F18 in linkage group 20,
             complete sequence
          Length = 124183

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 269   aacaggccatgtcataaagc 288
             ||||||||||||||||||||
Sbjct: 24868 aacaggccatgtcataaagc 24849

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>gb|AF013293.1|IG005I10 Arabidopsis thaliana BAC IG005I10
          Length = 111906

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 381   atgagctcctctttgactgc 400
             ||||||||||||||||||||
Sbjct: 14645 atgagctcctctttgactgc 14626

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>dbj|AP001866.3| Homo sapiens genomic DNA, chromosome 4q22-q24, clone:2317D23, complete
             sequence
          Length = 78200

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 66    attctctgcctgttgatttt 85
             ||||||||||||||||||||
Sbjct: 22134 attctctgcctgttgatttt 22115


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,728,895
Number of Sequences: 3902068
Number of extensions: 3728895
Number of successful extensions: 75993
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 75763
Number of HSP's gapped (non-prelim): 230
length of query: 519
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 496
effective length of database: 17,143,297,704
effective search space: 8503075661184
effective search space used: 8503075661184
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result