ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal14c09 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AJ251051.1|AFA251051 Avena fatua mRNA for VIP2 protein (vip2 gene) Length = 1724 Score = 527 bits (266), Expect = e-146 Identities = 373/409 (91%) Strand = Plus / Plus Query: 13 gccnacgtcgaggatctgttgtttctccatcgtacttcagtaatggatctggctctagat 72 ||| |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| Sbjct: 977 gccaacgtcgaggatctgttttttctccatcgtacttcagtaatgggtctggctctagat 1036 Query: 73 ctagagctcctaatgttcctcctctggtacctcagttcatgagggcacatggtagcatca 132 |||||||||||||||||||||| ||||||||||| || |||||||||||| | ||| ||| Sbjct: 1037 ctagagctcctaatgttcctccactggtacctcaatttatgagggcacatagcagcctca 1096 Query: 133 acgaacagtacccgcagagttcatcatccagccttttcgctggagctcatagatcaggag 192 |||||||||||| ||||| | |||| || ||||||||||| || || |||||||| |||| Sbjct: 1097 acgaacagtacctgcagaatccatcttctagccttttcgccggggcgcatagatcgggag 1156 Query: 193 gcatgcgacctgcccctccgccacctcaaccggaaaacccaacattttgcctgttcccac 252 ||||||| ||||| || || || |||||||| || ||||||||||||||||||||||||| Sbjct: 1157 gcatgcggcctgctccgccacctcctcaaccagagaacccaacattttgcctgttcccac 1216 Query: 253 cgggctcatccggtcatagttcaatggatactgatgaggctggaggaagccgattctatg 312 | || |||||||| |||||||||||||| |||||||| |||||||||| ||||||||||| Sbjct: 1217 caggttcatccggccatagttcaatggagactgatgacgctggaggaaaccgattctatg 1276 Query: 313 cctgggagcgcgatcgcttcgcgccgtacccattgatgccagtcgactgtgagacaagct 372 ||||||||||||||||||||||||| |||||||| |||||||| ||||| |||||||||| Sbjct: 1277 cctgggagcgcgatcgcttcgcgccatacccattaatgccagtggactgcgagacaagct 1336 Query: 373 ggtggagctcacagcagtctcatggcgcatcagaatccacacccgcacc 421 ||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 1337 ggtggagctcacagcagtctcatggcgcatcagaatccacaccggcacc 1385 Score = 109 bits (55), Expect = 1e-20 Identities = 79/87 (90%) Strand = Plus / Plus Query: 444 cagtggatcggcctcggcaggtcgtcgcccgagaatagatcacccgagggctcatcgtat 503 |||||||||||||||||| |||| ||||| || || ||||| ||||||||| |||| ||| Sbjct: 1420 cagtggatcggcctcggccggtcatcgcctgaaaacagatcgcccgagggcacatcatat 1479 Query: 504 cgacaaatgcactctcctcggatgtag 530 ||||||||||||||||||||||||||| Sbjct: 1480 cgacaaatgcactctcctcggatgtag 1506 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 541 agaggcaacctaagttaaaactt 563 ||||||||||||||||||||||| Sbjct: 1505 agaggcaacctaagttaaaactt 1527
>ref|NM_185266.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1320 Score = 381 bits (192), Expect = e-102 Identities = 422/499 (84%), Gaps = 6/499 (1%) Strand = Plus / Plus Query: 17 acgtcgaggatctgttgtttctccatcgtacttcagtaatggatctggctctagatctag 76 |||||||||||| | |||||||||| |||||||||||||||||||| ||||||||||| Sbjct: 813 acgtcgaggatcatctatttctccatcatacttcagtaatggatctggttctagatctag 872 Query: 77 agctcctaatgttcctcctctggtacctcagttcatgagggcacatggtagcatcaacga 136 ||||||||||||||||||| |||||||||| ||||||||||| || || ||||| | || Sbjct: 873 agctcctaatgttcctcctatggtacctcaattcatgagggcgcacggcagcattagtga 932 Query: 137 acagtacccgcagagttcatcatccagccttttcgctggagctcatagatcaggaggcat 196 |||||||| ||||||||||||||||||| | || ||||| |||||||||||||||||||| Sbjct: 933 acagtaccagcagagttcatcatccagcttatttgctggggctcatagatcaggaggcat 992 Query: 197 gcgacctgcccctccgccacctcaaccggaaaacccaacattttgcctgttcccaccggg 256 |||| |||| || ||||| |||| ||| || ||||| |||||||||| |||||||| || Sbjct: 993 gcgaactgcaccgccgccccctctaccagagaacccggcattttgccttttcccaccagg 1052 Query: 257 ctcatccggtcatagttcaatggatactgatgaggctggaggaagccgattctatgcctg 316 ||||| || |||| || ||||| |||||||| || ||||||| ||||||||||||||| Sbjct: 1053 ttcatctggccataactcgatggagactgatgatgcaggaggaaaccgattctatgcctg 1112 Query: 317 ggagcgcgatcgcttcgcgccgtacccattgatgccagtcgactgtgagacaagctggtg 376 ||| || ||||||||||| || |||||| | |||||||| ||||||||||||| |||||| Sbjct: 1113 ggaacgggatcgcttcgcaccatacccactaatgccagtggactgtgagacaaactggtg 1172 Query: 377 gagctcacagcagtctcatggcgcatcagaatccacacccgcacctgcgccgaggagact 436 ||| ||||| || |||||||| ||||||| |||||| ||||| || |||||||| Sbjct: 1173 gagttcacaacaatctcatggtacatcaga------acccgcgcctgctccaaggagact 1226 Query: 437 ctttggccagtggatcggcctcggcaggtcgtcgcccgagaatagatcacccgagggctc 496 ||||| || ||||| || | || || || || || || ||| |||||||||||||||| Sbjct: 1227 atttgggcaatggattggtgttggaagatcatctccggaaaatcgatcacccgagggctc 1286 Query: 497 atcgtatcgacaaatgcac 515 ||||||||| ||||||||| Sbjct: 1287 atcgtatcggcaaatgcac 1305
>dbj|AK111816.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013147K05, full insert sequence Length = 1537 Score = 381 bits (192), Expect = e-102 Identities = 422/499 (84%), Gaps = 6/499 (1%) Strand = Plus / Plus Query: 17 acgtcgaggatctgttgtttctccatcgtacttcagtaatggatctggctctagatctag 76 |||||||||||| | |||||||||| |||||||||||||||||||| ||||||||||| Sbjct: 805 acgtcgaggatcatctatttctccatcatacttcagtaatggatctggttctagatctag 864 Query: 77 agctcctaatgttcctcctctggtacctcagttcatgagggcacatggtagcatcaacga 136 ||||||||||||||||||| |||||||||| ||||||||||| || || ||||| | || Sbjct: 865 agctcctaatgttcctcctatggtacctcaattcatgagggcgcacggcagcattagtga 924 Query: 137 acagtacccgcagagttcatcatccagccttttcgctggagctcatagatcaggaggcat 196 |||||||| ||||||||||||||||||| | || ||||| |||||||||||||||||||| Sbjct: 925 acagtaccagcagagttcatcatccagcttatttgctggggctcatagatcaggaggcat 984 Query: 197 gcgacctgcccctccgccacctcaaccggaaaacccaacattttgcctgttcccaccggg 256 |||| |||| || ||||| |||| ||| || ||||| |||||||||| |||||||| || Sbjct: 985 gcgaactgcaccgccgccccctctaccagagaacccggcattttgccttttcccaccagg 1044 Query: 257 ctcatccggtcatagttcaatggatactgatgaggctggaggaagccgattctatgcctg 316 ||||| || |||| || ||||| |||||||| || ||||||| ||||||||||||||| Sbjct: 1045 ttcatctggccataactcgatggagactgatgatgcaggaggaaaccgattctatgcctg 1104 Query: 317 ggagcgcgatcgcttcgcgccgtacccattgatgccagtcgactgtgagacaagctggtg 376 ||| || ||||||||||| || |||||| | |||||||| ||||||||||||| |||||| Sbjct: 1105 ggaacgggatcgcttcgcaccatacccactaatgccagtggactgtgagacaaactggtg 1164 Query: 377 gagctcacagcagtctcatggcgcatcagaatccacacccgcacctgcgccgaggagact 436 ||| ||||| || |||||||| ||||||| |||||| ||||| || |||||||| Sbjct: 1165 gagttcacaacaatctcatggtacatcaga------acccgcgcctgctccaaggagact 1218 Query: 437 ctttggccagtggatcggcctcggcaggtcgtcgcccgagaatagatcacccgagggctc 496 ||||| || ||||| || | || || || || || || ||| |||||||||||||||| Sbjct: 1219 atttgggcaatggattggtgttggaagatcatctccggaaaatcgatcacccgagggctc 1278 Query: 497 atcgtatcgacaaatgcac 515 ||||||||| ||||||||| Sbjct: 1279 atcgtatcggcaaatgcac 1297
>gb|AC087551.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0431G05, complete sequence Length = 145044 Score = 339 bits (171), Expect = 6e-90 Identities = 386/458 (84%), Gaps = 6/458 (1%) Strand = Plus / Minus Query: 58 gatctggctctagatctagagctcctaatgttcctcctctggtacctcagttcatgaggg 117 ||||||| |||||||||||||||||||||||||||||| |||||||||| |||||||||| Sbjct: 7862 gatctggttctagatctagagctcctaatgttcctcctatggtacctcaattcatgaggg 7803 Query: 118 cacatggtagcatcaacgaacagtacccgcagagttcatcatccagccttttcgctggag 177 | || || ||||| | |||||||||| ||||||||||||||||||| | || ||||| | Sbjct: 7802 cgcacggcagcattagtgaacagtaccagcagagttcatcatccagcttatttgctgggg 7743 Query: 178 ctcatagatcaggaggcatgcgacctgcccctccgccacctcaaccggaaaacccaacat 237 ||||||||||||||||||||||| |||| || ||||| |||| ||| || ||||| ||| Sbjct: 7742 ctcatagatcaggaggcatgcgaactgcaccgccgccccctctaccagagaacccggcat 7683 Query: 238 tttgcctgttcccaccgggctcatccggtcatagttcaatggatactgatgaggctggag 297 ||||||| |||||||| || ||||| || |||| || ||||| |||||||| || |||| Sbjct: 7682 tttgccttttcccaccaggttcatctggccataactcgatggagactgatgatgcaggag 7623 Query: 298 gaagccgattctatgcctgggagcgcgatcgcttcgcgccgtacccattgatgccagtcg 357 ||| |||||||||||||||||| || ||||||||||| || |||||| | |||||||| | Sbjct: 7622 gaaaccgattctatgcctgggaacgggatcgcttcgcaccatacccactaatgccagtgg 7563 Query: 358 actgtgagacaagctggtggagctcacagcagtctcatggcgcatcagaatccacacccg 417 |||||||||||| ||||||||| ||||| || |||||||| ||||||| ||||| Sbjct: 7562 actgtgagacaaactggtggagttcacaacaatctcatggtacatcaga------acccg 7509 Query: 418 cacctgcgccgaggagactctttggccagtggatcggcctcggcaggtcgtcgcccgaga 477 | ||||| || |||||||| ||||| || ||||| || | || || || || || || | Sbjct: 7508 cgcctgctccaaggagactatttgggcaatggattggtgttggaagatcatctccggaaa 7449 Query: 478 atagatcacccgagggctcatcgtatcgacaaatgcac 515 || ||||||||||||||||||||||||| ||||||||| Sbjct: 7448 atcgatcacccgagggctcatcgtatcggcaaatgcac 7411 Score = 44.1 bits (22), Expect = 0.50 Identities = 37/42 (88%) Strand = Plus / Minus Query: 17 acgtcgaggatctgttgtttctccatcgtacttcagtaatgg 58 |||||||||||| | |||||||||| |||||||||||||| Sbjct: 8413 acgtcgaggatcatctatttctccatcatacttcagtaatgg 8372
>gb|AC093492.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0059G01, complete sequence Length = 141661 Score = 339 bits (171), Expect = 6e-90 Identities = 386/458 (84%), Gaps = 6/458 (1%) Strand = Plus / Minus Query: 58 gatctggctctagatctagagctcctaatgttcctcctctggtacctcagttcatgaggg 117 ||||||| |||||||||||||||||||||||||||||| |||||||||| |||||||||| Sbjct: 117389 gatctggttctagatctagagctcctaatgttcctcctatggtacctcaattcatgaggg 117330 Query: 118 cacatggtagcatcaacgaacagtacccgcagagttcatcatccagccttttcgctggag 177 | || || ||||| | |||||||||| ||||||||||||||||||| | || ||||| | Sbjct: 117329 cgcacggcagcattagtgaacagtaccagcagagttcatcatccagcttatttgctgggg 117270 Query: 178 ctcatagatcaggaggcatgcgacctgcccctccgccacctcaaccggaaaacccaacat 237 ||||||||||||||||||||||| |||| || ||||| |||| ||| || ||||| ||| Sbjct: 117269 ctcatagatcaggaggcatgcgaactgcaccgccgccccctctaccagagaacccggcat 117210 Query: 238 tttgcctgttcccaccgggctcatccggtcatagttcaatggatactgatgaggctggag 297 ||||||| |||||||| || ||||| || |||| || ||||| |||||||| || |||| Sbjct: 117209 tttgccttttcccaccaggttcatctggccataactcgatggagactgatgatgcaggag 117150 Query: 298 gaagccgattctatgcctgggagcgcgatcgcttcgcgccgtacccattgatgccagtcg 357 ||| |||||||||||||||||| || ||||||||||| || |||||| | |||||||| | Sbjct: 117149 gaaaccgattctatgcctgggaacgggatcgcttcgcaccatacccactaatgccagtgg 117090 Query: 358 actgtgagacaagctggtggagctcacagcagtctcatggcgcatcagaatccacacccg 417 |||||||||||| ||||||||| ||||| || |||||||| ||||||| ||||| Sbjct: 117089 actgtgagacaaactggtggagttcacaacaatctcatggtacatcaga------acccg 117036 Query: 418 cacctgcgccgaggagactctttggccagtggatcggcctcggcaggtcgtcgcccgaga 477 | ||||| || |||||||| ||||| || ||||| || | || || || || || || | Sbjct: 117035 cgcctgctccaaggagactatttgggcaatggattggtgttggaagatcatctccggaaa 116976 Query: 478 atagatcacccgagggctcatcgtatcgacaaatgcac 515 || ||||||||||||||||||||||||| ||||||||| Sbjct: 116975 atcgatcacccgagggctcatcgtatcggcaaatgcac 116938 Score = 44.1 bits (22), Expect = 0.50 Identities = 37/42 (88%) Strand = Plus / Minus Query: 17 acgtcgaggatctgttgtttctccatcgtacttcagtaatgg 58 |||||||||||| | |||||||||| |||||||||||||| Sbjct: 117940 acgtcgaggatcatctatttctccatcatacttcagtaatgg 117899
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 339 bits (171), Expect = 6e-90 Identities = 386/458 (84%), Gaps = 6/458 (1%) Strand = Plus / Minus Query: 58 gatctggctctagatctagagctcctaatgttcctcctctggtacctcagttcatgaggg 117 ||||||| |||||||||||||||||||||||||||||| |||||||||| |||||||||| Sbjct: 3130145 gatctggttctagatctagagctcctaatgttcctcctatggtacctcaattcatgaggg 3130086 Query: 118 cacatggtagcatcaacgaacagtacccgcagagttcatcatccagccttttcgctggag 177 | || || ||||| | |||||||||| ||||||||||||||||||| | || ||||| | Sbjct: 3130085 cgcacggcagcattagtgaacagtaccagcagagttcatcatccagcttatttgctgggg 3130026 Query: 178 ctcatagatcaggaggcatgcgacctgcccctccgccacctcaaccggaaaacccaacat 237 ||||||||||||||||||||||| |||| || ||||| |||| ||| || ||||| ||| Sbjct: 3130025 ctcatagatcaggaggcatgcgaactgcaccgccgccccctctaccagagaacccggcat 3129966 Query: 238 tttgcctgttcccaccgggctcatccggtcatagttcaatggatactgatgaggctggag 297 ||||||| |||||||| || ||||| || |||| || ||||| |||||||| || |||| Sbjct: 3129965 tttgccttttcccaccaggttcatctggccataactcgatggagactgatgatgcaggag 3129906 Query: 298 gaagccgattctatgcctgggagcgcgatcgcttcgcgccgtacccattgatgccagtcg 357 ||| |||||||||||||||||| || ||||||||||| || |||||| | |||||||| | Sbjct: 3129905 gaaaccgattctatgcctgggaacgggatcgcttcgcaccatacccactaatgccagtgg 3129846 Query: 358 actgtgagacaagctggtggagctcacagcagtctcatggcgcatcagaatccacacccg 417 |||||||||||| ||||||||| ||||| || |||||||| ||||||| ||||| Sbjct: 3129845 actgtgagacaaactggtggagttcacaacaatctcatggtacatcaga------acccg 3129792 Query: 418 cacctgcgccgaggagactctttggccagtggatcggcctcggcaggtcgtcgcccgaga 477 | ||||| || |||||||| ||||| || ||||| || | || || || || || || | Sbjct: 3129791 cgcctgctccaaggagactatttgggcaatggattggtgttggaagatcatctccggaaa 3129732 Query: 478 atagatcacccgagggctcatcgtatcgacaaatgcac 515 || ||||||||||||||||||||||||| ||||||||| Sbjct: 3129731 atcgatcacccgagggctcatcgtatcggcaaatgcac 3129694 Score = 44.1 bits (22), Expect = 0.50 Identities = 37/42 (88%) Strand = Plus / Minus Query: 17 acgtcgaggatctgttgtttctccatcgtacttcagtaatgg 58 |||||||||||| | |||||||||| |||||||||||||| Sbjct: 3130696 acgtcgaggatcatctatttctccatcatacttcagtaatgg 3130655
>gb|AY108590.1| Zea mays PCO110089 mRNA sequence Length = 1070 Score = 234 bits (118), Expect = 3e-58 Identities = 270/320 (84%), Gaps = 3/320 (0%) Strand = Plus / Plus Query: 70 gatctagagctcctaatgttcctcctctggtacctcagttcatgagggcacatggtagca 129 |||||||| |||| | ||||||||||||| | ||||||||||||||||| ||||| |||| Sbjct: 61 gatctagacctcccagtgttcctcctctgatgcctcagttcatgagggcccatggcagca 120 Query: 130 tcaacgaacagtacccgcagagttcatcatccagccttttcgctggagctcatagatcag 189 |||| ||||| |||| |||| ||||||||| ||||| || ||||| || ||||| |||| Sbjct: 121 tcaatgaacaataccaacagaattcatcatctagcctatttgctggggcacataggtcag 180 Query: 190 gaggcatgcgacctgcccctccgccacctcaaccggaaaacccaacattttgcctgttcc 249 |||||||||||||||| || | |||||| ||| || ||||| || |||| | |||||| Sbjct: 181 gaggcatgcgacctgcgcc---gacacctctaccagagaaccccaccttttccttgttcc 237 Query: 250 caccgggctcatccggtcatagttcaatggatactgatgaggctggaggaagccgattct 309 ||||||| |||||||| |||||||| ||||| |||||||| ||||||||||||| |||| Sbjct: 238 caccgggttcatccggccatagttcgatggagactgatgacgctggaggaagccagttct 297 Query: 310 atgcctgggagcgcgatcgcttcgcgccgtacccattgatgccagtcgactgtgagacaa 369 ||||||||||||| || || ||||| || | || |||||||| || ||||| |||| || Sbjct: 298 atgcctgggagcgtgaccggttcgccccatttccgttgatgcctgtggactgcgagataa 357 Query: 370 gctggtggagctcacagcag 389 ||||||||| |||||||||| Sbjct: 358 gctggtggacctcacagcag 377 Score = 79.8 bits (40), Expect = 9e-12 Identities = 70/80 (87%) Strand = Plus / Plus Query: 451 tcggcctcggcaggtcgtcgcccgagaatagatcacccgagggctcatcgtatcgacaaa 510 ||||| || |||||||||| || ||||| ||||| ||||||||||| |||||||| |||| Sbjct: 598 tcggcgtcagcaggtcgtcccctgagaacagatcgcccgagggctcttcgtatcggcaaa 657 Query: 511 tgcactctcctcggatgtag 530 ||||||| || ||||||||| Sbjct: 658 tgcactcgccacggatgtag 677 Score = 67.9 bits (34), Expect = 3e-08 Identities = 55/62 (88%) Strand = Plus / Plus Query: 451 tcggcctcggcaggtcgtcgcccgagaatagatcacccgagggctcatcgtatcgacaaa 510 ||||| ||||||||||||| || || |||||| ||||||||||||| |||||||| |||| Sbjct: 436 tcggcgtcggcaggtcgtcccctgaaaatagaccacccgagggctcttcgtatcggcaaa 495 Query: 511 tg 512 || Sbjct: 496 tg 497 Score = 61.9 bits (31), Expect = 2e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 13 gccnacgtcgaggatctgttgtttctccatcgtacttcagtaatggatct 62 ||| ||||||| |||||||||||||||||| |||||||| ||||||||| Sbjct: 16 gccaacgtcgaatatctgttgtttctccatcttacttcagcaatggatct 65 Score = 46.1 bits (23), Expect = 0.13 Identities = 38/43 (88%) Strand = Plus / Plus Query: 346 tgatgccagtcgactgtgagacaagctggtggagctcacagca 388 ||||||| || ||||| ||||||||||||||| ||||||||| Sbjct: 496 tgatgcctgtggactgcgagacaagctggtggtcctcacagca 538
>gb|AY104627.1| Zea mays PCO126290 mRNA sequence Length = 1295 Score = 192 bits (97), Expect = 9e-46 Identities = 171/196 (87%) Strand = Plus / Plus Query: 13 gccnacgtcgaggatctgttgtttctccatcgtacttcagtaatggatctggctctagat 72 ||| ||| |||| ||||||||| |||||||| |||||||||||||||||||| || |||| Sbjct: 1067 gccaacgccgagcatctgttgtctctccatcttacttcagtaatggatctggttccagat 1126 Query: 73 ctagagctcctaatgttcctcctctggtacctcagttcatgagggcacatggtagcatca 132 ||||| |||| ||||||||||||||| | ||||||||||||||||| ||||| ||||||| Sbjct: 1127 ctagacctcccaatgttcctcctctgatgcctcagttcatgagggctcatggcagcatca 1186 Query: 133 acgaacagtacccgcagagttcatcatccagccttttcgctggagctcatagatcaggag 192 ||||||||||| |||| ||||||||| ||| | || ||||| | ||||| ||||||| Sbjct: 1187 gcgaacagtaccaacagaattcatcatctagcttatttgctgggggccataggtcaggag 1246 Query: 193 gcatgcgacctgcccc 208 |||||||||||||||| Sbjct: 1247 gcatgcgacctgcccc 1262
>dbj|AK104006.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-002-F10, full insert sequence Length = 458 Score = 89.7 bits (45), Expect = 9e-15 Identities = 137/168 (81%), Gaps = 6/168 (3%) Strand = Plus / Plus Query: 348 atgccagtcgactgtgagacaagctggtggagctcacagcagtctcatggcgcatcagaa 407 |||||||| ||||||||||||| ||||||||| ||||| || |||||||| ||||||| Sbjct: 2 atgccagtggactgtgagacaaactggtggagttcacaacaatctcatggtacatcaga- 60 Query: 408 tccacacccgcacctgcgccgaggagactctttggccagtggatcggcctcggcaggtcg 467 |||||| ||||| || |||||||| ||||| || ||||| || | || || || Sbjct: 61 -----acccgcgcctgctccaaggagactatttgggcaatggattggtgttggaagatca 115 Query: 468 tcgcccgagaatagatcacccgagggctcatcgtatcgacaaatgcac 515 || || || ||| ||||||||||||||||||||||||| ||||||||| Sbjct: 116 tctccggaaaatcgatcacccgagggctcatcgtatcggcaaatgcac 163
>ref|NM_184029.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1317 Score = 60.0 bits (30), Expect = 8e-06 Identities = 72/86 (83%) Strand = Plus / Plus Query: 54 aatggatctggctctagatctagagctcctaatgttcctcctctggtacctcagttcatg 113 ||||||||||| || || |||||| ||| | |||||||||| ||| ||| || |||||| Sbjct: 853 aatggatctggatcaaggtctagaattccaagtgttcctcctatggcaccacaattcatg 912 Query: 114 agggcacatggtagcatcaacgaaca 139 ||| | ||||||| |||||||||||| Sbjct: 913 aggccgcatggtaacatcaacgaaca 938
>dbj|AK058986.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-020-E07, full insert sequence Length = 1315 Score = 60.0 bits (30), Expect = 8e-06 Identities = 72/86 (83%) Strand = Plus / Plus Query: 54 aatggatctggctctagatctagagctcctaatgttcctcctctggtacctcagttcatg 113 ||||||||||| || || |||||| ||| | |||||||||| ||| ||| || |||||| Sbjct: 564 aatggatctggatcaaggtctagaattccaagtgttcctcctatggcaccacaattcatg 623 Query: 114 agggcacatggtagcatcaacgaaca 139 ||| | ||||||| |||||||||||| Sbjct: 624 aggccgcatggtaacatcaacgaaca 649
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 52.0 bits (26), Expect = 0.002 Identities = 47/54 (87%) Strand = Plus / Plus Query: 86 tgttcctcctctggtacctcagttcatgagggcacatggtagcatcaacgaaca 139 |||||||||| ||| ||| || ||||||||| | ||||||| |||||||||||| Sbjct: 14001596 tgttcctcctatggcaccacaattcatgaggccgcatggtaacatcaacgaaca 14001649
>dbj|AP003764.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1051E10 Length = 207782 Score = 52.0 bits (26), Expect = 0.002 Identities = 47/54 (87%) Strand = Plus / Plus Query: 86 tgttcctcctctggtacctcagttcatgagggcacatggtagcatcaacgaaca 139 |||||||||| ||| ||| || ||||||||| | ||||||| |||||||||||| Sbjct: 161898 tgttcctcctatggcaccacaattcatgaggccgcatggtaacatcaacgaaca 161951
>dbj|AP003258.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0463A02 Length = 151041 Score = 52.0 bits (26), Expect = 0.002 Identities = 47/54 (87%) Strand = Plus / Plus Query: 86 tgttcctcctctggtacctcagttcatgagggcacatggtagcatcaacgaaca 139 |||||||||| ||| ||| || ||||||||| | ||||||| |||||||||||| Sbjct: 77341 tgttcctcctatggcaccacaattcatgaggccgcatggtaacatcaacgaaca 77394
>dbj|AK070217.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023044E12, full insert sequence Length = 2298 Score = 44.1 bits (22), Expect = 0.50 Identities = 46/54 (85%) Strand = Plus / Plus Query: 86 tgttcctcctctggtacctcagttcatgagggcacatggtagcatcaacgaaca 139 |||| ||||| ||| ||| || ||||||||| | ||||||| |||||||||||| Sbjct: 1579 tgtttctcctatggcaccacaattcatgaggccgcatggtaacatcaacgaaca 1632
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 437 ctttggccagtggatcggcctcggc 461 |||||||||| |||||||||||||| Sbjct: 1024159 ctttggccaggggatcggcctcggc 1024135
>gb|AC008259.4|AC008259 Drosophila melanogaster, chromosome 2R, region 43D-43D, BAC clone BACR04H12, complete sequence Length = 175285 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 60 tctggctctagatctagagct 80 ||||||||||||||||||||| Sbjct: 7171 tctggctctagatctagagct 7151
>gb|AC008258.4|AC008258 Drosophila melanogaster, chromosome 2R, region 43C-43C, BAC clone BACR04G20, complete sequence Length = 184079 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 60 tctggctctagatctagagct 80 ||||||||||||||||||||| Sbjct: 107678 tctggctctagatctagagct 107658
>gb|AE003841.5| Drosophila melanogaster chromosome 2R, section 9 of 73 of the complete sequence Length = 266427 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 60 tctggctctagatctagagct 80 ||||||||||||||||||||| Sbjct: 263942 tctggctctagatctagagct 263922
>gb|AC004280.1|AC004280 Drosophila melanogaster DNA sequence (P1 DS01142 (D148)), complete sequence Length = 78174 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 60 tctggctctagatctagagct 80 ||||||||||||||||||||| Sbjct: 72008 tctggctctagatctagagct 71988
>gb|AE017354.1| Legionella pneumophila subsp. pneumophila str. Philadelphia 1, complete genome Length = 3397754 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 217 ctcaaccggaaaacccaacatttt 240 ||||||||||||||||| |||||| Sbjct: 1817431 ctcaaccggaaaacccagcatttt 1817454
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome Length = 5650368 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 318 gagcgcgatcgcttcgcgcc 337 |||||||||||||||||||| Sbjct: 3772004 gagcgcgatcgcttcgcgcc 3772023
>gb|AC103355.9| Mus musculus chromosome 14, clone RP24-482C10, complete sequence Length = 192348 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 365 gacaagctggtggagctcac 384 |||||||||||||||||||| Sbjct: 17000 gacaagctggtggagctcac 17019
>gb|AC109213.6| Mus musculus chromosome 16, clone RP23-345L20, complete sequence Length = 244558 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 224 ggaaaacccaacattttgcc 243 |||||||||||||||||||| Sbjct: 74765 ggaaaacccaacattttgcc 74746
>gb|AF533892.1| Mus musculus p63 (Trp63) gene, alternatively spliced, complete cds Length = 208158 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 224 ggaaaacccaacattttgcc 243 |||||||||||||||||||| Sbjct: 202217 ggaaaacccaacattttgcc 202198
>emb|AL161628.9| Human DNA sequence from clone RP11-31K16 on chromosome 9 Contains a pseudogene similar to part of nucleolar protein 5A (56kDa with KKE/D repeat) (NOL5A) (NOP56), the ELAVL2 gene for ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B) (HUB, HELN1), two novel genes, the 5' end of a novel gene and a CpG island, complete sequence Length = 183483 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 gttcatcatccagccttttc 170 |||||||||||||||||||| Sbjct: 79295 gttcatcatccagccttttc 79276
>emb|AL139398.20| Human DNA sequence from clone RP11-528B10 on chromosome Xp11.21-11.23, complete sequence Length = 125999 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 80 tcctaatgttcctcctctgg 99 |||||||||||||||||||| Sbjct: 80794 tcctaatgttcctcctctgg 80813
>emb|AL096774.9|HSDJ144C9 Human DNA sequence from clone RP1-144C9 on chromosome 1p34.3-36.11 Contains the gene for a novel protein, a ribosomal protein S24 (RPS24) pseudogene, the GPR3 gene for G protein-coupled receptor 3 and the 3' end of the WASF2 gene for WAS protein family, member 2, complete sequence Length = 77322 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 200 acctgcccctccgccacctc 219 |||||||||||||||||||| Sbjct: 33833 acctgcccctccgccacctc 33814
>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome Length = 4501104 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 214 cacctcaaccggaaaaccca 233 |||||||||||||||||||| Sbjct: 2770010 cacctcaaccggaaaaccca 2769991
>emb|AL645606.22| Mouse DNA sequence from clone RP23-374K2 on chromosome 1, complete sequence Length = 193458 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 529 agccccctctgcagaggcaa 548 |||||||||||||||||||| Sbjct: 81418 agccccctctgcagaggcaa 81437
>ref|NM_006990.2| Homo sapiens WAS protein family, member 2 (WASF2), mRNA Length = 4270 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 200 acctgcccctccgccacctc 219 |||||||||||||||||||| Sbjct: 1173 acctgcccctccgccacctc 1192
>dbj|AK075231.1| Homo sapiens cDNA FLJ90750 fis, clone PLACE2000118, weakly similar to WISKOTT-ALDRICH SYNDROME PROTEIN HOMOLOG Length = 3417 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 200 acctgcccctccgccacctc 219 |||||||||||||||||||| Sbjct: 323 acctgcccctccgccacctc 342
>gb|AF232689.2| Rat cytomegalovirus Maastricht, complete genome Length = 230138 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 44 gtacttcagtaatggatctg 63 |||||||||||||||||||| Sbjct: 211492 gtacttcagtaatggatctg 211473
>gb|AC026708.6| Homo sapiens chromosome 5 clone CTD-2078B5, complete sequence Length = 142047 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 201 cctgcccctccgccacctca 220 |||||||||||||||||||| Sbjct: 73075 cctgcccctccgccacctca 73056
>gb|AC109642.4| Homo sapiens BAC clone RP11-776F5 from 2, complete sequence Length = 74821 Score = 40.1 bits (20), Expect = 7.8 Identities = 29/32 (90%) Strand = Plus / Plus Query: 58 gatctggctctagatctagagctcctaatgtt 89 |||||||||||||| || ||||||||| |||| Sbjct: 65937 gatctggctctagagcttgagctcctattgtt 65968
>gb|BC012329.1| Homo sapiens WAS protein family, member 2, mRNA (cDNA clone IMAGE:4555042) Length = 1504 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 200 acctgcccctccgccacctc 219 |||||||||||||||||||| Sbjct: 1173 acctgcccctccgccacctc 1192
>emb|BX548065.6| Mouse DNA sequence from clone RP23-163B21 on chromosome X, complete sequence Length = 225082 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 536 tctgcagaggcaacctaagt 555 |||||||||||||||||||| Sbjct: 53500 tctgcagaggcaacctaagt 53481
>gb|BC040943.1| Homo sapiens WAS protein family, member 2, mRNA (cDNA clone MGC:48747 IMAGE:4385298), complete cds Length = 2129 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 200 acctgcccctccgccacctc 219 |||||||||||||||||||| Sbjct: 1164 acctgcccctccgccacctc 1183
>gb|AC166113.3| Mus musculus BAC clone RP23-23E6 from chromosome 14, complete sequence Length = 252394 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 365 gacaagctggtggagctcac 384 |||||||||||||||||||| Sbjct: 163863 gacaagctggtggagctcac 163882
>dbj|AB026542.1| Homo sapiens WAVE2 mRNA for WASP-family protein, complete cds Length = 1497 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 200 acctgcccctccgccacctc 219 |||||||||||||||||||| Sbjct: 957 acctgcccctccgccacctc 976 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,813,571 Number of Sequences: 3902068 Number of extensions: 3813571 Number of successful extensions: 84001 Number of sequences better than 10.0: 40 Number of HSP's better than 10.0 without gapping: 40 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 83765 Number of HSP's gapped (non-prelim): 235 length of query: 573 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 550 effective length of database: 17,143,297,704 effective search space: 9428813737200 effective search space used: 9428813737200 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
