ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal14b23 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY736122.1| Triticum aestivum chloroplast inositol phosphatase-like protein mRNA, complete cds; nuclear gene for chloroplast product Length = 909 Score = 967 bits (488), Expect = 0.0 Identities = 533/549 (97%), Gaps = 1/549 (0%) Strand = Plus / Plus Query: 12 cctactgtggcagatacaaagatgaacttcctgaagtcgtacaaacgtcctattccaagc 71 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 212 cctactgtggcagatacaaagatgaacttcctgaagtcatacaaacgtcctattccaagc 271 Query: 72 atttacagtacagttctacaagaacttttggtgcagcaacatctgatgagatacaaaagt 131 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 272 atttacagtacagtcctacaagaacttttggtgcagcaacatctgatgagatacaaaagt 331 Query: 132 acgtatcagtatgatcctgtgtttgctcttggatttgtcaccgtctatgaccagcttatg 191 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 332 acctatcagtatgatcctgtgtttgctcttggatttgtcaccgtctatgaccagcttatg 391 Query: 192 gaagggtaccccagcaacgaggacagggatgccatcttcaagtcatatgtaacggcgtta 251 |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| Sbjct: 392 gaagggtaccccagcaccgaggacagggatgccatcttcaagtcatacgtaacggcgtta 451 Query: 252 aatgaagatcctgagcaatacagggctgatgcacaaaggatggaagagtgggcacgctca 311 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 452 aatgaagatcctgagcaatacagggctgatgcacaaaggatggaagagtgggcacgctca 511 Query: 312 caaaatggtaatctgttagttgaattttcttccagagatggggaaatagagtccattctg 371 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 512 caaaatggtaacttgttagttgaattttcttccagagatggggaaatagagtccattctg 571 Query: 372 aaagatatatcagaaagggcccagggtaagggaaacttcagctacagccggttctttgct 431 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 572 aaagatatatcagaaagggcccagggtaagggaaacttcagctacagccggttctttgct 631 Query: 432 gttggcttgttccgtttgcttgagctctcaaatgcgacggagccaacccgtactggacaa 491 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 632 gttggcttgttccgtttgcttgagctctcaaatgcgacggagccaa-ccgtactggacaa 690 Query: 492 gctttgcgctgctctaaacatcaatnnnnnnngcgtggatagagaccttgacgtttaccg 551 |||||| |||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 691 gctttgtgctgctctaaacatcaataaaaagagcgtggatagagaccttgacgtttaccg 750 Query: 552 caacttact 560 ||||||||| Sbjct: 751 caacttact 759
>gb|AY377991.1| Triticum aestivum chloroplast-localized Ptr ToxA-binding protein1 (TaThf1) mRNA, complete cds; nuclear gene for chloroplast product Length = 1130 Score = 959 bits (484), Expect = 0.0 Identities = 532/549 (96%), Gaps = 1/549 (0%) Strand = Plus / Plus Query: 12 cctactgtggcagatacaaagatgaacttcctgaagtcgtacaaacgtcctattccaagc 71 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 178 cctactgtggcagatacaaagatgaacttcctgaagtcatacaaacgtcctattccaagc 237 Query: 72 atttacagtacagttctacaagaacttttggtgcagcaacatctgatgagatacaaaagt 131 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 238 atttacagtacagtcctacaagaacttttggtgcagcaacatctgatgagatacaaaagt 297 Query: 132 acgtatcagtatgatcctgtgtttgctcttggatttgtcaccgtctatgaccagcttatg 191 || |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 298 acctatcagtatgatcctgtgtttgctcttggatttgtcactgtctatgaccagcttatg 357 Query: 192 gaagggtaccccagcaacgaggacagggatgccatcttcaagtcatatgtaacggcgtta 251 |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| Sbjct: 358 gaagggtaccccagcaccgaggacagggatgccatcttcaagtcatacgtaacggcgtta 417 Query: 252 aatgaagatcctgagcaatacagggctgatgcacaaaggatggaagagtgggcacgctca 311 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 418 aatgaagatcctgagcaatacagggctgatgcacaaaggatggaagagtgggcacgctca 477 Query: 312 caaaatggtaatctgttagttgaattttcttccagagatggggaaatagagtccattctg 371 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 478 caaaatggtaacttgttagttgaattttcttccagagatggggaaatagagtccattctg 537 Query: 372 aaagatatatcagaaagggcccagggtaagggaaacttcagctacagccggttctttgct 431 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 538 aaagatatatcagaaagggcccagggtaagggaaacttcagctacagccggttctttgct 597 Query: 432 gttggcttgttccgtttgcttgagctctcaaatgcgacggagccaacccgtactggacaa 491 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 598 gttggcttgttccgtttgcttgagctctcaaatgcgacggagccaa-ccgtactggacaa 656 Query: 492 gctttgcgctgctctaaacatcaatnnnnnnngcgtggatagagaccttgacgtttaccg 551 |||||| |||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 657 gctttgtgctgctctaaacatcaataaaaagagcgtggatagagaccttgacgtttaccg 716 Query: 552 caacttact 560 ||||||||| Sbjct: 717 caacttact 725
>ref|XM_478693.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1153 Score = 549 bits (277), Expect = e-153 Identities = 446/501 (89%), Gaps = 1/501 (0%) Strand = Plus / Plus Query: 15 actgtggcagatacaaagatgaacttcctgaagtcgtacaaacgtcctattccaagcatt 74 ||||| ||||| ||||||||||| || || ||||| ||||| |||||||| | ||||||| Sbjct: 277 actgtcgcagaaacaaagatgaattttctcaagtcatacaagcgtcctatcctaagcatt 336 Query: 75 tacagtacagttctacaagaacttttggtgcagcaacatctgatgagatacaaaagtacg 134 ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || Sbjct: 337 tacagtacagttctacaagaacttttggtacagcaacatctgatgagatacaaaacaaca 396 Query: 135 tatcagtatgatcctgtgtttgctcttggatttgtcaccgtctatgaccagcttatggaa 194 ||||| |||||| | |||||||||||||| ||||| |||||||||||||| || |||||| Sbjct: 397 tatcaatatgatgcggtgtttgctcttggttttgtgaccgtctatgaccaactcatggaa 456 Query: 195 gggtaccccagcaacgaggacagggatgccatcttcaagtcatatgtaacggcgttaaat 254 |||||||| ||||| ||||| |||||||| |||||||| ||||| |||| |||||||| Sbjct: 457 gggtaccctagcaatgaggatagggatgcaatcttcaaagcatatataacagcgttaaac 516 Query: 255 gaagatcctgagcaatacagggctgatgcacaaaggatggaagagtgggcacgctcacaa 314 ||||| |||||||||||||| ||||| ||||||| ||||||||||||||| || || || Sbjct: 517 gaagaccctgagcaatacagagctgacgcacaaaagatggaagagtgggctcgttcccag 576 Query: 315 aatggtaatctgttagttgaattttcttccagagatggggaaatagagtccattctgaaa 374 ||||||||| |||||||| ||||| |||| |||||| ||||||||| ||||||||||| Sbjct: 577 aatggtaattctttagttgagttttcatccaaagatggagaaatagaggccattctgaaa 636 Query: 375 gatatatcagaaagggcccagggtaagggaaacttcagctacagccggttctttgctgtt 434 ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||| Sbjct: 637 gatatttcagaaagggcccagggtaagggaagcttcagctacagccggttctttgcagtt 696 Query: 435 ggcttgttccgtttgcttgagctctcaaatgcgacggagccaacccgtactggacaagct 494 ||||||||||||||||||||||| ||||||| || ||||||| || |||| |||||||| Sbjct: 697 ggcttgttccgtttgcttgagcttgcaaatgcaacagagccaa-ccatactagacaagct 755 Query: 495 ttgcgctgctctaaacatcaa 515 ||||||||||||||||||||| Sbjct: 756 ttgcgctgctctaaacatcaa 776
>gb|AY224446.1| Oryza sativa (japonica cultivar-group) isolate 23045 inositol phosphatase-like protein mRNA, complete cds Length = 864 Score = 549 bits (277), Expect = e-153 Identities = 446/501 (89%), Gaps = 1/501 (0%) Strand = Plus / Plus Query: 15 actgtggcagatacaaagatgaacttcctgaagtcgtacaaacgtcctattccaagcatt 74 ||||| ||||| ||||||||||| || || ||||| ||||| |||||||| | ||||||| Sbjct: 178 actgtcgcagaaacaaagatgaattttctcaagtcatacaagcgtcctatcctaagcatt 237 Query: 75 tacagtacagttctacaagaacttttggtgcagcaacatctgatgagatacaaaagtacg 134 ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || Sbjct: 238 tacagtacagttctacaagaacttttggtacagcaacatctgatgagatacaaaacaaca 297 Query: 135 tatcagtatgatcctgtgtttgctcttggatttgtcaccgtctatgaccagcttatggaa 194 ||||| |||||| | |||||||||||||| ||||| |||||||||||||| || |||||| Sbjct: 298 tatcaatatgatgcggtgtttgctcttggttttgtgaccgtctatgaccaactcatggaa 357 Query: 195 gggtaccccagcaacgaggacagggatgccatcttcaagtcatatgtaacggcgttaaat 254 |||||||| ||||| ||||| |||||||| |||||||| ||||| |||| |||||||| Sbjct: 358 gggtaccctagcaatgaggatagggatgcaatcttcaaagcatatataacagcgttaaac 417 Query: 255 gaagatcctgagcaatacagggctgatgcacaaaggatggaagagtgggcacgctcacaa 314 ||||| |||||||||||||| ||||| ||||||| ||||||||||||||| || || || Sbjct: 418 gaagaccctgagcaatacagagctgacgcacaaaagatggaagagtgggctcgttcccag 477 Query: 315 aatggtaatctgttagttgaattttcttccagagatggggaaatagagtccattctgaaa 374 ||||||||| |||||||| ||||| |||| |||||| ||||||||| ||||||||||| Sbjct: 478 aatggtaattctttagttgagttttcatccaaagatggagaaatagaggccattctgaaa 537 Query: 375 gatatatcagaaagggcccagggtaagggaaacttcagctacagccggttctttgctgtt 434 ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||| Sbjct: 538 gatatttcagaaagggcccagggtaagggaagcttcagctacagccggttctttgcagtt 597 Query: 435 ggcttgttccgtttgcttgagctctcaaatgcgacggagccaacccgtactggacaagct 494 ||||||||||||||||||||||| ||||||| || ||||||| || |||| |||||||| Sbjct: 598 ggcttgttccgtttgcttgagcttgcaaatgcaacagagccaa-ccatactagacaagct 656 Query: 495 ttgcgctgctctaaacatcaa 515 ||||||||||||||||||||| Sbjct: 657 ttgcgctgctctaaacatcaa 677
>dbj|AK064914.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000M13, full insert sequence Length = 1152 Score = 549 bits (277), Expect = e-153 Identities = 446/501 (89%), Gaps = 1/501 (0%) Strand = Plus / Plus Query: 15 actgtggcagatacaaagatgaacttcctgaagtcgtacaaacgtcctattccaagcatt 74 ||||| ||||| ||||||||||| || || ||||| ||||| |||||||| | ||||||| Sbjct: 276 actgtcgcagaaacaaagatgaattttctcaagtcatacaagcgtcctatcctaagcatt 335 Query: 75 tacagtacagttctacaagaacttttggtgcagcaacatctgatgagatacaaaagtacg 134 ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || Sbjct: 336 tacagtacagttctacaagaacttttggtacagcaacatctgatgagatacaaaacaaca 395 Query: 135 tatcagtatgatcctgtgtttgctcttggatttgtcaccgtctatgaccagcttatggaa 194 ||||| |||||| | |||||||||||||| ||||| |||||||||||||| || |||||| Sbjct: 396 tatcaatatgatgcggtgtttgctcttggttttgtgaccgtctatgaccaactcatggaa 455 Query: 195 gggtaccccagcaacgaggacagggatgccatcttcaagtcatatgtaacggcgttaaat 254 |||||||| ||||| ||||| |||||||| |||||||| ||||| |||| |||||||| Sbjct: 456 gggtaccctagcaatgaggatagggatgcaatcttcaaagcatatataacagcgttaaac 515 Query: 255 gaagatcctgagcaatacagggctgatgcacaaaggatggaagagtgggcacgctcacaa 314 ||||| |||||||||||||| ||||| ||||||| ||||||||||||||| || || || Sbjct: 516 gaagaccctgagcaatacagagctgacgcacaaaagatggaagagtgggctcgttcccag 575 Query: 315 aatggtaatctgttagttgaattttcttccagagatggggaaatagagtccattctgaaa 374 ||||||||| |||||||| ||||| |||| |||||| ||||||||| ||||||||||| Sbjct: 576 aatggtaattctttagttgagttttcatccaaagatggagaaatagaggccattctgaaa 635 Query: 375 gatatatcagaaagggcccagggtaagggaaacttcagctacagccggttctttgctgtt 434 ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||| Sbjct: 636 gatatttcagaaagggcccagggtaagggaagcttcagctacagccggttctttgcagtt 695 Query: 435 ggcttgttccgtttgcttgagctctcaaatgcgacggagccaacccgtactggacaagct 494 ||||||||||||||||||||||| ||||||| || ||||||| || |||| |||||||| Sbjct: 696 ggcttgttccgtttgcttgagcttgcaaatgcaacagagccaa-ccatactagacaagct 754 Query: 495 ttgcgctgctctaaacatcaa 515 ||||||||||||||||||||| Sbjct: 755 ttgcgctgctctaaacatcaa 775
>gb|AY104484.1| Zea mays PCO107854 mRNA sequence Length = 842 Score = 549 bits (277), Expect = e-153 Identities = 478/546 (87%), Gaps = 1/546 (0%) Strand = Plus / Plus Query: 15 actgtggcagatacaaagatgaacttcctgaagtcgtacaaacgtcctattccaagcatt 74 ||||| ||||| ||||| |||||||||| ||||| |||||||| || || ||||||||| Sbjct: 297 actgtcgcagaaacaaaactgaacttccttaagtcatacaaacgcccaatcccaagcatt 356 Query: 75 tacagtacagttctacaagaacttttggtgcagcaacatctgatgagatacaaaagtacg 134 |||||| |||| ||||||||||||||||||||||||| |||||||||||||||| || Sbjct: 357 tacagtgcagtcttacaagaacttttggtgcagcaacacctgatgagatacaaaaaaacc 416 Query: 135 tatcagtatgatcctgtgtttgctcttggatttgtcaccgtctatgaccagcttatggaa 194 |||||||||||| |||||||||||||||| || ||||| |||||||| ||||| |||||| Sbjct: 417 tatcagtatgatgctgtgtttgctcttggcttcgtcactgtctatgatcagctcatggaa 476 Query: 195 gggtaccccagcaacgaggacagggatgccatcttcaagtcatatgtaacggcgttaaat 254 |||||||||||||| ||||||| |||| ||||||||||| ||||| |||| || |||||| Sbjct: 477 gggtaccccagcaatgaggacaaggattccatcttcaaggcatatataacagcattaaat 536 Query: 255 gaagatcctgagcaatacagggctgatgcacaaaggatggaagagtgggcacgctcacaa 314 ||||||||||| |||||||| |||||||||| || |||||||||||||||||| || || Sbjct: 537 gaagatcctgatcaatacagagctgatgcactaaagatggaagagtgggcacgttcccag 596 Query: 315 aatggtaatctgttagttgaattttcttccagagatggggaaatagagtccattctgaaa 374 || |||| | |||||||| ||||||||||||||||| ||||| ||| | ||||||||| Sbjct: 597 aacggtagttccttagttgatttttcttccagagatggagaaatcgaggctattctgaaa 656 Query: 375 gatatatcagaaagggcccagggtaagggaaacttcagctacagccggttctttgctgtt 434 |||||||||||||||||| |||||||||||||||||||||||||||| |||||||| ||| Sbjct: 657 gatatatcagaaagggccaagggtaagggaaacttcagctacagccgattctttgcagtt 716 Query: 435 ggcttgttccgtttgcttgagctctcaaatgcgacggagccaacccgtactggacaagct 494 |||||||||||||||||||||||||||||||| |||||||||| | |||| |||||||| Sbjct: 717 ggcttgttccgtttgcttgagctctcaaatgcaacggagccaa-caatactagacaagct 775 Query: 495 ttgcgctgctctaaacatcaatnnnnnnngcgtggatagagaccttgacgtttaccgcaa 554 ||||||||| |||||| ||| | | |||||||| |||||||| ||||||||||| Sbjct: 776 ttgcgctgcactaaacgtcagtaaaagaagtgtggatagggaccttgatgtttaccgcaa 835 Query: 555 cttact 560 | |||| Sbjct: 836 catact 841
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 280 bits (141), Expect = 5e-72 Identities = 231/261 (88%) Strand = Plus / Minus Query: 15 actgtggcagatacaaagatgaacttcctgaagtcgtacaaacgtcctattccaagcatt 74 ||||| ||||| ||||||||||| || || ||||| ||||| |||||||| | ||||||| Sbjct: 22268321 actgtcgcagaaacaaagatgaattttctcaagtcatacaagcgtcctatcctaagcatt 22268262 Query: 75 tacagtacagttctacaagaacttttggtgcagcaacatctgatgagatacaaaagtacg 134 ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || Sbjct: 22268261 tacagtacagttctacaagaacttttggtacagcaacatctgatgagatacaaaacaaca 22268202 Query: 135 tatcagtatgatcctgtgtttgctcttggatttgtcaccgtctatgaccagcttatggaa 194 ||||| |||||| | |||||||||||||| ||||| |||||||||||||| || |||||| Sbjct: 22268201 tatcaatatgatgcggtgtttgctcttggttttgtgaccgtctatgaccaactcatggaa 22268142 Query: 195 gggtaccccagcaacgaggacagggatgccatcttcaagtcatatgtaacggcgttaaat 254 |||||||| ||||| ||||| |||||||| |||||||| ||||| |||| |||||||| Sbjct: 22268141 gggtaccctagcaatgaggatagggatgcaatcttcaaagcatatataacagcgttaaac 22268082 Query: 255 gaagatcctgagcaatacagg 275 ||||| ||||||||||||||| Sbjct: 22268081 gaagaccctgagcaatacagg 22268061 Score = 238 bits (120), Expect = 2e-59 Identities = 183/204 (89%) Strand = Plus / Minus Query: 276 gctgatgcacaaaggatggaagagtgggcacgctcacaaaatggtaatctgttagttgaa 335 ||||| ||||||| ||||||||||||||| || || || ||||||||| |||||||| Sbjct: 22267617 gctgacgcacaaaagatggaagagtgggctcgttcccagaatggtaattctttagttgag 22267558 Query: 336 ttttcttccagagatggggaaatagagtccattctgaaagatatatcagaaagggcccag 395 ||||| |||| |||||| ||||||||| |||||||||||||||| ||||||||||||||| Sbjct: 22267557 ttttcatccaaagatggagaaatagaggccattctgaaagatatttcagaaagggcccag 22267498 Query: 396 ggtaagggaaacttcagctacagccggttctttgctgttggcttgttccgtttgcttgag 455 |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 22267497 ggtaagggaagcttcagctacagccggttctttgcagttggcttgttccgtttgcttgag 22267438 Query: 456 ctctcaaatgcgacggagccaacc 479 || ||||||| || ||||||||| Sbjct: 22267437 cttgcaaatgcaacagagccaacc 22267414 Score = 50.1 bits (25), Expect = 0.008 Identities = 25/25 (100%) Strand = Plus / Minus Query: 491 agctttgcgctgctctaaacatcaa 515 ||||||||||||||||||||||||| Sbjct: 22266278 agctttgcgctgctctaaacatcaa 22266254
>dbj|AP005195.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0567H04 Length = 181420 Score = 280 bits (141), Expect = 5e-72 Identities = 231/261 (88%) Strand = Plus / Minus Query: 15 actgtggcagatacaaagatgaacttcctgaagtcgtacaaacgtcctattccaagcatt 74 ||||| ||||| ||||||||||| || || ||||| ||||| |||||||| | ||||||| Sbjct: 73567 actgtcgcagaaacaaagatgaattttctcaagtcatacaagcgtcctatcctaagcatt 73508 Query: 75 tacagtacagttctacaagaacttttggtgcagcaacatctgatgagatacaaaagtacg 134 ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || Sbjct: 73507 tacagtacagttctacaagaacttttggtacagcaacatctgatgagatacaaaacaaca 73448 Query: 135 tatcagtatgatcctgtgtttgctcttggatttgtcaccgtctatgaccagcttatggaa 194 ||||| |||||| | |||||||||||||| ||||| |||||||||||||| || |||||| Sbjct: 73447 tatcaatatgatgcggtgtttgctcttggttttgtgaccgtctatgaccaactcatggaa 73388 Query: 195 gggtaccccagcaacgaggacagggatgccatcttcaagtcatatgtaacggcgttaaat 254 |||||||| ||||| ||||| |||||||| |||||||| ||||| |||| |||||||| Sbjct: 73387 gggtaccctagcaatgaggatagggatgcaatcttcaaagcatatataacagcgttaaac 73328 Query: 255 gaagatcctgagcaatacagg 275 ||||| ||||||||||||||| Sbjct: 73327 gaagaccctgagcaatacagg 73307 Score = 238 bits (120), Expect = 2e-59 Identities = 183/204 (89%) Strand = Plus / Minus Query: 276 gctgatgcacaaaggatggaagagtgggcacgctcacaaaatggtaatctgttagttgaa 335 ||||| ||||||| ||||||||||||||| || || || ||||||||| |||||||| Sbjct: 72863 gctgacgcacaaaagatggaagagtgggctcgttcccagaatggtaattctttagttgag 72804 Query: 336 ttttcttccagagatggggaaatagagtccattctgaaagatatatcagaaagggcccag 395 ||||| |||| |||||| ||||||||| |||||||||||||||| ||||||||||||||| Sbjct: 72803 ttttcatccaaagatggagaaatagaggccattctgaaagatatttcagaaagggcccag 72744 Query: 396 ggtaagggaaacttcagctacagccggttctttgctgttggcttgttccgtttgcttgag 455 |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 72743 ggtaagggaagcttcagctacagccggttctttgcagttggcttgttccgtttgcttgag 72684 Query: 456 ctctcaaatgcgacggagccaacc 479 || ||||||| || ||||||||| Sbjct: 72683 cttgcaaatgcaacagagccaacc 72660 Score = 50.1 bits (25), Expect = 0.008 Identities = 25/25 (100%) Strand = Plus / Minus Query: 491 agctttgcgctgctctaaacatcaa 515 ||||||||||||||||||||||||| Sbjct: 71524 agctttgcgctgctctaaacatcaa 71500
>gb|AY342161.1| Solanum tuberosum cultivar Kennebec light-regulated chloroplast-localized protein (Thf1) mRNA, complete cds; nuclear gene for chloroplast product Length = 1281 Score = 79.8 bits (40), Expect = 9e-12 Identities = 121/148 (81%) Strand = Plus / Plus Query: 141 tatgatcctgtgtttgctcttggatttgtcaccgtctatgaccagcttatggaagggtac 200 |||||||| |||||||| || || ||||| || || ||||| || |||||||| || ||| Sbjct: 412 tatgatcccgtgtttgccctaggttttgttactgtgtatgatcaacttatggagggctac 471 Query: 201 cccagcaacgaggacagggatgccatcttcaagtcatatgtaacggcgttaaatgaagat 260 || || | |||||| | ||||||||||||| ||||| || |||| |||| || ||| Sbjct: 472 ccaagtgaagaggaccgtaatgccatcttcaaagcatatatagaggcgctaaaggaggat 531 Query: 261 cctgagcaatacagggctgatgcacaaa 288 |||||||||||||| ||||||||||||| Sbjct: 532 cctgagcaatacagagctgatgcacaaa 559
>ref|NM_127659.1| Arabidopsis thaliana THF1 AT2G20890 (THF1) mRNA, complete cds Length = 1246 Score = 63.9 bits (32), Expect = 5e-07 Identities = 50/56 (89%) Strand = Plus / Plus Query: 141 tatgatcctgtgtttgctcttggatttgtcaccgtctatgaccagcttatggaagg 196 ||||||||||| ||||| |||||||||||||| || ||||| ||||| |||||||| Sbjct: 437 tatgatcctgtttttgcccttggatttgtcactgtatatgatcagctcatggaagg 492 Score = 40.1 bits (20), Expect = 7.6 Identities = 38/44 (86%) Strand = Plus / Plus Query: 414 tacagccggttctttgctgttggcttgttccgtttgcttgagct 457 |||||| ||||||| |||||||| | || |||||||||||||| Sbjct: 710 tacagcaggttcttcgctgttgggctctttcgtttgcttgagct 753
>gb|AC006234.4| Arabidopsis thaliana chromosome 2 clone F5H14 map mi148, complete sequence Length = 129667 Score = 63.9 bits (32), Expect = 5e-07 Identities = 50/56 (89%) Strand = Plus / Minus Query: 141 tatgatcctgtgtttgctcttggatttgtcaccgtctatgaccagcttatggaagg 196 ||||||||||| ||||| |||||||||||||| || ||||| ||||| |||||||| Sbjct: 43483 tatgatcctgtttttgcccttggatttgtcactgtatatgatcagctcatggaagg 43428 Score = 40.1 bits (20), Expect = 7.6 Identities = 38/44 (86%) Strand = Plus / Minus Query: 414 tacagccggttctttgctgttggcttgttccgtttgcttgagct 457 |||||| ||||||| |||||||| | || |||||||||||||| Sbjct: 43119 tacagcaggttcttcgctgttgggctctttcgtttgcttgagct 43076
>gb|AY081596.1| Arabidopsis thaliana unknown protein (At2g20890) mRNA, complete cds Length = 953 Score = 63.9 bits (32), Expect = 5e-07 Identities = 50/56 (89%) Strand = Plus / Plus Query: 141 tatgatcctgtgtttgctcttggatttgtcaccgtctatgaccagcttatggaagg 196 ||||||||||| ||||| |||||||||||||| || ||||| ||||| |||||||| Sbjct: 322 tatgatcctgtttttgcccttggatttgtcactgtatatgatcagctcatggaagg 377 Score = 40.1 bits (20), Expect = 7.6 Identities = 38/44 (86%) Strand = Plus / Plus Query: 414 tacagccggttctttgctgttggcttgttccgtttgcttgagct 457 |||||| ||||||| |||||||| | || |||||||||||||| Sbjct: 595 tacagcaggttcttcgctgttgggctctttcgtttgcttgagct 638
>gb|AY062799.1| Arabidopsis thaliana Unknown protein (At2g20890; F5H14.14) mRNA, complete cds Length = 1143 Score = 63.9 bits (32), Expect = 5e-07 Identities = 50/56 (89%) Strand = Plus / Plus Query: 141 tatgatcctgtgtttgctcttggatttgtcaccgtctatgaccagcttatggaagg 196 ||||||||||| ||||| |||||||||||||| || ||||| ||||| |||||||| Sbjct: 432 tatgatcctgtttttgcccttggatttgtcactgtatatgatcagctcatggaagg 487 Score = 40.1 bits (20), Expect = 7.6 Identities = 38/44 (86%) Strand = Plus / Plus Query: 414 tacagccggttctttgctgttggcttgttccgtttgcttgagct 457 |||||| ||||||| |||||||| | || |||||||||||||| Sbjct: 705 tacagcaggttcttcgctgttgggctctttcgtttgcttgagct 748
>emb|BX818901.1|CNS0A8Y0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB24ZE08 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1114 Score = 63.9 bits (32), Expect = 5e-07 Identities = 50/56 (89%) Strand = Plus / Plus Query: 141 tatgatcctgtgtttgctcttggatttgtcaccgtctatgaccagcttatggaagg 196 ||||||||||| ||||| |||||||||||||| || ||||| ||||| |||||||| Sbjct: 419 tatgatcctgtttttgcccttggatttgtcactgtatatgatcagctcatggaagg 474 Score = 40.1 bits (20), Expect = 7.6 Identities = 38/44 (86%) Strand = Plus / Plus Query: 414 tacagccggttctttgctgttggcttgttccgtttgcttgagct 457 |||||| ||||||| |||||||| | || |||||||||||||| Sbjct: 692 tacagcaggttcttcgctgttgggctctttcgtttgcttgagct 735
>emb|BX820020.1|CNS0A8FF Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS62ZD04 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1131 Score = 63.9 bits (32), Expect = 5e-07 Identities = 50/56 (89%) Strand = Plus / Plus Query: 141 tatgatcctgtgtttgctcttggatttgtcaccgtctatgaccagcttatggaagg 196 ||||||||||| ||||| |||||||||||||| || ||||| ||||| |||||||| Sbjct: 397 tatgatcctgtttttgcccttggatttgtcactgtatatgatcagctcatggaagg 452 Score = 40.1 bits (20), Expect = 7.6 Identities = 38/44 (86%) Strand = Plus / Plus Query: 414 tacagccggttctttgctgttggcttgttccgtttgcttgagct 457 |||||| ||||||| |||||||| | || |||||||||||||| Sbjct: 671 tacagcaggttcttcgctgttgggctctttcgtttgcttgagct 714
>gb|AY087394.1| Arabidopsis thaliana clone 34875 mRNA, complete sequence Length = 1246 Score = 63.9 bits (32), Expect = 5e-07 Identities = 50/56 (89%) Strand = Plus / Plus Query: 141 tatgatcctgtgtttgctcttggatttgtcaccgtctatgaccagcttatggaagg 196 ||||||||||| ||||| |||||||||||||| || ||||| ||||| |||||||| Sbjct: 437 tatgatcctgtttttgcccttggatttgtcactgtatatgatcagctcatggaagg 492 Score = 40.1 bits (20), Expect = 7.6 Identities = 38/44 (86%) Strand = Plus / Plus Query: 414 tacagccggttctttgctgttggcttgttccgtttgcttgagct 457 |||||| ||||||| |||||||| | || |||||||||||||| Sbjct: 710 tacagcaggttcttcgctgttgggctctttcgtttgcttgagct 753
>gb|AY899908.1| Arabidopsis thaliana chloroplast thylakoid formation 1 (THF1) mRNA, complete cds; nuclear gene for chloroplast product Length = 1245 Score = 63.9 bits (32), Expect = 5e-07 Identities = 50/56 (89%) Strand = Plus / Plus Query: 141 tatgatcctgtgtttgctcttggatttgtcaccgtctatgaccagcttatggaagg 196 ||||||||||| ||||| |||||||||||||| || ||||| ||||| |||||||| Sbjct: 436 tatgatcctgtttttgcccttggatttgtcactgtatatgatcagctcatggaagg 491 Score = 40.1 bits (20), Expect = 7.6 Identities = 38/44 (86%) Strand = Plus / Plus Query: 414 tacagccggttctttgctgttggcttgttccgtttgcttgagct 457 |||||| ||||||| |||||||| | || |||||||||||||| Sbjct: 709 tacagcaggttcttcgctgttgggctctttcgtttgcttgagct 752
>dbj|AK059695.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-B12, full insert sequence Length = 1512 Score = 50.1 bits (25), Expect = 0.008 Identities = 25/25 (100%) Strand = Plus / Plus Query: 491 agctttgcgctgctctaaacatcaa 515 ||||||||||||||||||||||||| Sbjct: 987 agctttgcgctgctctaaacatcaa 1011
>gb|AC003694.1|AC003694 Mus musculus chromosome 19, clone CIT282B21, complete sequence Length = 186314 Score = 48.1 bits (24), Expect = 0.031 Identities = 24/24 (100%) Strand = Plus / Minus Query: 212 ggacagggatgccatcttcaagtc 235 |||||||||||||||||||||||| Sbjct: 44823 ggacagggatgccatcttcaagtc 44800
>emb|BX820185.1|CNS0A8J4 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS88ZH01 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1158 Score = 42.1 bits (21), Expect = 1.9 Identities = 49/57 (85%), Gaps = 1/57 (1%) Strand = Plus / Plus Query: 141 tatgatcctgtgtttgctct-tggatttgtcaccgtctatgaccagcttatggaagg 196 ||||||||||| ||||| | |||||||||||| || ||||| ||||| |||||||| Sbjct: 420 tatgatcctgtttttgccccgtggatttgtcactgtatatgatcagctcatggaagg 476
>ref|NM_103989.2| Arabidopsis thaliana structural molecule AT1G51110 mRNA, complete cds Length = 1437 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 223 ccatcttcaagtcatatgta 242 |||||||||||||||||||| Sbjct: 1116 ccatcttcaagtcatatgta 1097
>gb|CP000066.1| Trypanosoma brucei chromosome 3, complete sequence Length = 1653225 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 366 attctgaaagatatatcagaaagg 389 ||||||||| |||||||||||||| Sbjct: 824965 attctgaaaaatatatcagaaagg 824942
>gb|AC159446.1| Trypanosoma brucei chromosome 3 clone RPCI93-3K10, complete sequence Length = 91751 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 366 attctgaaagatatatcagaaagg 389 ||||||||| |||||||||||||| Sbjct: 31411 attctgaaaaatatatcagaaagg 31388
>gb|AC158576.3| Mus musculus chromosome 7, clone RP24-252B21, complete sequence Length = 181195 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 340 cttccagagatggggaaatagagt 363 ||||| |||||||||||||||||| Sbjct: 54503 cttcctgagatggggaaatagagt 54480
>gb|AC092676.2| Homo sapiens BAC clone RP11-641E23 from 7, complete sequence Length = 118035 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 287 aaggatggaagagtgggcac 306 |||||||||||||||||||| Sbjct: 48045 aaggatggaagagtgggcac 48026
>gb|AC140332.3| Mus musculus BAC clone RP23-408K9 from chromosome 19, complete sequence Length = 206515 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 212 ggacagggatgccatcttcaagtc 235 |||||||| ||||||||||||||| Sbjct: 7961 ggacagggctgccatcttcaagtc 7938
>gb|AC163450.5| Mus musculus chromosome 1, clone RP23-209F20, complete sequence Length = 182102 Score = 40.1 bits (20), Expect = 7.6 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Plus Query: 257 agatcctgagcaatacagg-gctgatgc 283 ||||||||||||||||||| |||||||| Sbjct: 102350 agatcctgagcaatacaggtgctgatgc 102377
>emb|AL135785.10| Human DNA sequence from clone RP11-113O24 on chromosome 9p11-13.3 Contains a novel gene, possible ortholog of mouse insulin-like growth factor binding protein 7 (IGFBP7), a novel gene similar to aldehyde dehydrogenase 1 family, member B1 (ALDH5, ALDHX, MGC2230) (ALDH1B1), a novel gene and four CpG islands, complete sequence Length = 166207 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 530 atagagaccttgacgtttac 549 |||||||||||||||||||| Sbjct: 135216 atagagaccttgacgtttac 135197
>gb|AC158781.4| Mus musculus chromosome 7, clone RP23-264H19, complete sequence Length = 208419 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 340 cttccagagatggggaaatagagt 363 |||||||||||||| ||||||||| Sbjct: 194595 cttccagagatgggaaaatagagt 194618
>gb|AC100322.8| Mus musculus chromosome 7, clone RP23-124O24, complete sequence Length = 219314 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 340 cttccagagatggggaaatagagt 363 |||||||||||||| ||||||||| Sbjct: 15865 cttccagagatgggaaaatagagt 15888
>gb|AC008743.9| Homo sapiens chromosome 19 clone CTD-2560K21, complete sequence Length = 192097 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 344 cagagatggggaaatagagt 363 |||||||||||||||||||| Sbjct: 145092 cagagatggggaaatagagt 145111
>gb|AC093897.3| Homo sapiens BAC clone RP11-721G13 from 4, complete sequence Length = 163271 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 347 agatggggaaatagagtcca 366 |||||||||||||||||||| Sbjct: 97557 agatggggaaatagagtcca 97576
>gb|AC024243.8| Homo sapiens BAC clone RP11-528I4 from 4, complete sequence Length = 163857 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 345 agagatggggaaatagagtccatt 368 |||||||||||||||||| ||||| Sbjct: 118768 agagatggggaaatagagaccatt 118745
>gb|AC083909.20|AC083909 Mus musculus 1 BAC RP23-424A2 (Roswell Park Cancer Institute Mouse BAC Library) complete sequence Length = 204857 Score = 40.1 bits (20), Expect = 7.6 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Plus Query: 257 agatcctgagcaatacagg-gctgatgc 283 ||||||||||||||||||| |||||||| Sbjct: 4058 agatcctgagcaatacaggtgctgatgc 4085
>emb|BX813641.1|CNS0AC3Y Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB2ZA12 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1271 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 223 ccatcttcaagtcatatgta 242 |||||||||||||||||||| Sbjct: 1075 ccatcttcaagtcatatgta 1056
>emb|BX814945.1|CNS0ABC0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS1ZF08 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1308 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 223 ccatcttcaagtcatatgta 242 |||||||||||||||||||| Sbjct: 1085 ccatcttcaagtcatatgta 1066
>gb|AC079828.4|AC079828 Arabidopsis thaliana chromosome 1 BAC F23H24 genomic sequence, complete sequence Length = 45337 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 223 ccatcttcaagtcatatgta 242 |||||||||||||||||||| Sbjct: 18104 ccatcttcaagtcatatgta 18123
>gb|BT005347.1| Arabidopsis thaliana At1g51115 mRNA, complete cds Length = 1230 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 223 ccatcttcaagtcatatgta 242 |||||||||||||||||||| Sbjct: 1084 ccatcttcaagtcatatgta 1065
>gb|AY087688.1| Arabidopsis thaliana clone 37689 mRNA, complete sequence Length = 1439 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 223 ccatcttcaagtcatatgta 242 |||||||||||||||||||| Sbjct: 1117 ccatcttcaagtcatatgta 1098
>dbj|AK118545.1| Arabidopsis thaliana At1g51110 mRNA for unknown protein, complete cds, clone: RAFL19-77-I08 Length = 1333 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 223 ccatcttcaagtcatatgta 242 |||||||||||||||||||| Sbjct: 1088 ccatcttcaagtcatatgta 1069
>emb|AJ131520.2|TMA131520 Tropaeolum majus mRNA for alpha-D-xylosidase Length = 3151 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 27 acaaagatgaacttcctgaa 46 |||||||||||||||||||| Sbjct: 2459 acaaagatgaacttcctgaa 2478
>gb|AY262106.1| Newcastle disease virus AF2240 large protein (L) mRNA, complete cds Length = 6615 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 210 gaggacagggatgccatctt 229 |||||||||||||||||||| Sbjct: 4996 gaggacagggatgccatctt 5015
>gb|AC149086.4| Mus musculus BAC clone RP24-245L1 from 19, complete sequence Length = 185283 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 212 ggacagggatgccatcttcaagtc 235 |||||||| ||||||||||||||| Sbjct: 66251 ggacagggctgccatcttcaagtc 66274
>emb|AL109767.7|CNS018OX Human chromosome 14 DNA sequence BAC R-889B13 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 184039 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 97 ttttggtgcagcaacatctg 116 |||||||||||||||||||| Sbjct: 72474 ttttggtgcagcaacatctg 72493
>gb|AC099701.4| Mus musculus chromosome 7, clone RP23-184F6, complete sequence Length = 226167 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 340 cttccagagatggggaaatagagt 363 ||||| |||||||||||||||||| Sbjct: 11225 cttcctgagatggggaaatagagt 11248
>emb|AL132819.6|CNS01DTO Human chromosome 14 DNA sequence BAC C-2200A16 of library CalTech-D from chromosome 14 of Homo sapiens (Human), complete sequence Length = 140073 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 97 ttttggtgcagcaacatctg 116 |||||||||||||||||||| Sbjct: 97330 ttttggtgcagcaacatctg 97349 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,525,956 Number of Sequences: 3902068 Number of extensions: 4525956 Number of successful extensions: 91992 Number of sequences better than 10.0: 46 Number of HSP's better than 10.0 without gapping: 44 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 91869 Number of HSP's gapped (non-prelim): 116 length of query: 563 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 540 effective length of database: 17,143,297,704 effective search space: 9257380760160 effective search space used: 9257380760160 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
