ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal13m22 |
|---|---|
| Clone Library Name | barley_pub |
>PSAD_HORVU (P36213) Photosystem I reaction center subunit II, chloroplast| precursor (Photosystem I 20 kDa subunit) (PSI-D) Length = 205 Score = 135 bits (341), Expect = 2e-32 Identities = 65/69 (94%), Positives = 66/69 (95%) Frame = +2 Query: 5 RXQVEEFYVITWTSPKEQVFEMPTGGAAIMREGPNLLKPARKEQCLALGNRLRSKYKIAY 184 + QVEEFYVITWTSPKEQVFEMPTGGAAIMREGPNLLK ARKEQCLALGNRLRSKYKIAY Sbjct: 88 KAQVEEFYVITWTSPKEQVFEMPTGGAAIMREGPNLLKLARKEQCLALGNRLRSKYKIAY 147 Query: 185 QFYRVXPNG 211 QFYRV PNG Sbjct: 148 QFYRVFPNG 156
>PSAD1_ARATH (Q9S7H1) Photosystem I reaction center subunit II-1, chloroplast| precursor (Photosystem I 20 kDa subunit 1) (PSI-D1) Length = 208 Score = 129 bits (325), Expect = 2e-30 Identities = 61/69 (88%), Positives = 63/69 (91%) Frame = +2 Query: 5 RXQVEEFYVITWTSPKEQVFEMPTGGAAIMREGPNLLKPARKEQCLALGNRLRSKYKIAY 184 + QVEEFYVITW SPKEQ+FEMPTGGAAIMREGPNLLK ARKEQCLALG RLRSKYKI Y Sbjct: 91 KAQVEEFYVITWNSPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKITY 150 Query: 185 QFYRVXPNG 211 QFYRV PNG Sbjct: 151 QFYRVFPNG 159
>PSAD2_ARATH (Q9SA56) Photosystem I reaction center subunit II-2, chloroplast| precursor (Photosystem I 20 kDa subunit 2) (PSI-D2) Length = 204 Score = 129 bits (325), Expect = 2e-30 Identities = 61/69 (88%), Positives = 63/69 (91%) Frame = +2 Query: 5 RXQVEEFYVITWTSPKEQVFEMPTGGAAIMREGPNLLKPARKEQCLALGNRLRSKYKIAY 184 + QVEEFYVITW SPKEQ+FEMPTGGAAIMREGPNLLK ARKEQCLALG RLRSKYKI Y Sbjct: 87 KAQVEEFYVITWNSPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKITY 146 Query: 185 QFYRVXPNG 211 QFYRV PNG Sbjct: 147 QFYRVFPNG 155
>PSAD_CUCSA (P32869) Photosystem I reaction center subunit II, chloroplast| precursor (Photosystem I 20 kDa subunit) (PSI-D) (PS I subunit 5) Length = 207 Score = 129 bits (323), Expect = 3e-30 Identities = 61/69 (88%), Positives = 63/69 (91%) Frame = +2 Query: 5 RXQVEEFYVITWTSPKEQVFEMPTGGAAIMREGPNLLKPARKEQCLALGNRLRSKYKIAY 184 + QVEEFYVITW SPKEQ+FEMPTGGAAIMREGPNLLK ARKEQCLALG RLRSKYKI Y Sbjct: 90 KAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKY 149 Query: 185 QFYRVXPNG 211 QFYRV PNG Sbjct: 150 QFYRVFPNG 158
>PSAD_LYCES (P12372) Photosystem I reaction center subunit II, chloroplast| precursor (Photosystem I 20 kDa subunit) (PSI-D) Length = 208 Score = 127 bits (319), Expect = 8e-30 Identities = 60/69 (86%), Positives = 63/69 (91%) Frame = +2 Query: 5 RXQVEEFYVITWTSPKEQVFEMPTGGAAIMREGPNLLKPARKEQCLALGNRLRSKYKIAY 184 + QVEEFYVITW SPKEQ+FEMPTGGAAIMR+GPNLLK ARKEQCLALG RLRSKYKI Y Sbjct: 91 KAQVEEFYVITWESPKEQIFEMPTGGAAIMRQGPNLLKLARKEQCLALGTRLRSKYKINY 150 Query: 185 QFYRVXPNG 211 QFYRV PNG Sbjct: 151 QFYRVFPNG 159
>PSAD_SPIOL (P12353) Photosystem I reaction center subunit II, chloroplast| precursor (Photosystem I 20 kDa subunit) (PSI-D) Length = 212 Score = 127 bits (318), Expect = 1e-29 Identities = 60/69 (86%), Positives = 63/69 (91%) Frame = +2 Query: 5 RXQVEEFYVITWTSPKEQVFEMPTGGAAIMREGPNLLKPARKEQCLALGNRLRSKYKIAY 184 + QVEEFYVITW SPKEQ+FEMPTGGAAIMREGPNLLK ARKEQCLALG RLRSKYKI Y Sbjct: 95 KAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKY 154 Query: 185 QFYRVXPNG 211 QFYRV P+G Sbjct: 155 QFYRVFPSG 163
>PSAD_NICSY (P29302) Photosystem I reaction center subunit II, chloroplast| precursor (Photosystem I 20 kDa subunit) (PSI-D) Length = 204 Score = 124 bits (310), Expect = 9e-29 Identities = 59/69 (85%), Positives = 62/69 (89%) Frame = +2 Query: 5 RXQVEEFYVITWTSPKEQVFEMPTGGAAIMREGPNLLKPARKEQCLALGNRLRSKYKIAY 184 + QVEEFYVITW SPKEQ+FEMPTGGAAIMREG NLLK ARKEQCLALG RLRSKYKI Y Sbjct: 87 KAQVEEFYVITWESPKEQIFEMPTGGAAIMREGANLLKLARKEQCLALGTRLRSKYKINY 146 Query: 185 QFYRVXPNG 211 +FYRV PNG Sbjct: 147 RFYRVFPNG 155
>PSAD_CHLRE (Q39615) Photosystem I reaction center subunit II, chloroplast| precursor (Photosystem I 20 kDa subunit) (PSI-D) Length = 196 Score = 102 bits (254), Expect = 3e-22 Identities = 47/69 (68%), Positives = 57/69 (82%) Frame = +2 Query: 5 RXQVEEFYVITWTSPKEQVFEMPTGGAAIMREGPNLLKPARKEQCLALGNRLRSKYKIAY 184 + Q EEFYVITW + KEQ+FEMPTGGAAIMR+GPNLLK +KEQCLAL +LR+K+K+ Sbjct: 77 KAQTEEFYVITWEAKKEQIFEMPTGGAAIMRQGPNLLKFGKKEQCLALTTQLRNKFKLTP 136 Query: 185 QFYRVXPNG 211 FYRV P+G Sbjct: 137 CFYRVFPDG 145
>PSAD_GUITH (O78502) Photosystem I reaction center subunit II (Photosystem I 16| kDa polypeptide) (PSI-D) Length = 141 Score = 97.1 bits (240), Expect = 1e-20 Identities = 46/68 (67%), Positives = 56/68 (82%), Gaps = 1/68 (1%) Frame = +2 Query: 11 QVEEFYVITWTSPKEQVFEMPTGGAAIMREGPNLLKPARKEQCLALGNRLRSKYKIA-YQ 187 + EE Y ITWTSPKEQVFEMPTGGAAIMR+G NLL ARKEQCLALG ++++ +KI Y+ Sbjct: 26 ETEEKYAITWTSPKEQVFEMPTGGAAIMRKGENLLYLARKEQCLALGTQVKTSFKITDYK 85 Query: 188 FYRVXPNG 211 YR+ P+G Sbjct: 86 IYRIFPSG 93
>PSAD_MASLA (O07115) Photosystem I reaction center subunit II (Photosystem I 16| kDa polypeptide) (PSI-D) Length = 142 Score = 96.3 bits (238), Expect = 2e-20 Identities = 46/69 (66%), Positives = 54/69 (78%) Frame = +2 Query: 5 RXQVEEFYVITWTSPKEQVFEMPTGGAAIMREGPNLLKPARKEQCLALGNRLRSKYKIAY 184 + +VEE Y ITWTSPKEQVFEMPTGGAA MR+G NLL ARKEQC+ALG++LR Y Sbjct: 22 KAEVEEKYAITWTSPKEQVFEMPTGGAAKMRQGQNLLYLARKEQCIALGSQLRRLKITDY 81 Query: 185 QFYRVXPNG 211 + YR+ PNG Sbjct: 82 KIYRIYPNG 90
>PSAD_CYAPA (Q9T4W8) Photosystem I reaction center subunit II, cyanelle| precursor (Photosystem I 20 kDa subunit) (PSI-D) Length = 220 Score = 94.4 bits (233), Expect = 7e-20 Identities = 45/70 (64%), Positives = 55/70 (78%), Gaps = 1/70 (1%) Frame = +2 Query: 5 RXQVEEFYVITWTSPKEQVFEMPTGGAAIMREGPNLLKPARKEQCLALGNRLRSKYKIA- 181 + +VEEFY ITWT E VFE+PTGGAAIMR G NLL+ ARKEQC+ALG +L+ K+KI Sbjct: 98 KAEVEEFYSITWTGKSETVFELPTGGAAIMRAGENLLRLARKEQCIALGAQLKDKFKITD 157 Query: 182 YQFYRVXPNG 211 Y+ YRV P+G Sbjct: 158 YKIYRVYPSG 167
>PSAD_ODOSI (P49481) Photosystem I reaction center subunit II (Photosystem I 16| kDa polypeptide) (PSI-D) Length = 139 Score = 92.0 bits (227), Expect = 4e-19 Identities = 45/67 (67%), Positives = 52/67 (77%) Frame = +2 Query: 11 QVEEFYVITWTSPKEQVFEMPTGGAAIMREGPNLLKPARKEQCLALGNRLRSKYKIAYQF 190 +VEE Y ITWTS KEQ+FEMPTGGAAIMR G NLL ARKEQCLALG +LR+ Y+ Sbjct: 24 EVEEKYAITWTSKKEQIFEMPTGGAAIMRNGENLLYLARKEQCLALGTQLRTFKINDYKI 83 Query: 191 YRVXPNG 211 YR+ P+G Sbjct: 84 YRIFPSG 90
>PSAD_SYNY3 (P19569) Photosystem I reaction center subunit II (Photosystem I 16| kDa polypeptide) (PSI-D) Length = 140 Score = 91.7 bits (226), Expect = 5e-19 Identities = 47/68 (69%), Positives = 52/68 (76%), Gaps = 3/68 (4%) Frame = +2 Query: 17 EEFYVITWTSPKEQVFEMPTGGAAIMREGPNLLKPARKEQCLALGNRLRSKYKIA---YQ 187 EE Y ITWTS EQVFEMPTGGAAIM EG NLL ARKEQCLALG +LR+K+K Y+ Sbjct: 24 EEKYAITWTSASEQVFEMPTGGAAIMNEGENLLYLARKEQCLALGTQLRTKFKPKIQDYK 83 Query: 188 FYRVXPNG 211 YRV P+G Sbjct: 84 IYRVYPSG 91
>PSAD_PORPU (P51279) Photosystem I reaction center subunit II (Photosystem I 16| kDa polypeptide) (PSI-D) Length = 141 Score = 89.0 bits (219), Expect = 3e-18 Identities = 43/68 (63%), Positives = 51/68 (75%), Gaps = 1/68 (1%) Frame = +2 Query: 11 QVEEFYVITWTSPKEQVFEMPTGGAAIMREGPNLLKPARKEQCLALGNRLRSKYKIA-YQ 187 +VEE Y ITWT E FEMPTGG A MR+G NLL A+KEQCLALG +L+ K+KI+ Y+ Sbjct: 26 EVEEKYAITWTGKNESKFEMPTGGTATMRDGENLLYLAKKEQCLALGTQLKGKFKISDYK 85 Query: 188 FYRVXPNG 211 YRV PNG Sbjct: 86 IYRVFPNG 93
>PSAD_SKECO (O96800) Photosystem I reaction center subunit II (Photosystem I 16| kDa polypeptide) (PSI-D) Length = 139 Score = 88.6 bits (218), Expect = 4e-18 Identities = 43/67 (64%), Positives = 51/67 (76%) Frame = +2 Query: 11 QVEEFYVITWTSPKEQVFEMPTGGAAIMREGPNLLKPARKEQCLALGNRLRSKYKIAYQF 190 +VEE Y ITWTS KEQ+FEMPTGG+AIMR G NLL ARKEQCLAL +LR+ Y+ Sbjct: 24 EVEEKYAITWTSAKEQIFEMPTGGSAIMRNGENLLYLARKEQCLALSTQLRTFKINDYKI 83 Query: 191 YRVXPNG 211 YR+ P+G Sbjct: 84 YRIFPSG 90
>PSAD_NOSS8 (P56596) Photosystem I reaction center subunit II (Photosystem I 16| kDa polypeptide) (PSI-D) Length = 138 Score = 87.4 bits (215), Expect = 9e-18 Identities = 45/70 (64%), Positives = 53/70 (75%), Gaps = 1/70 (1%) Frame = +2 Query: 5 RXQVEEFYVITWTSPKEQVFEMPTGGAAIMREGPNLLKPARKEQCLALGNRLRSKYKIA- 181 + VEE Y ITWTSPK QVFE+PTGGAA M +G NLL ARKEQ +ALG +LR K+KI Sbjct: 21 KANVEEKYAITWTSPKAQVFELPTGGAATMNQGENLLYLARKEQGIALGGQLR-KFKITD 79 Query: 182 YQFYRVXPNG 211 Y+ YR+ PNG Sbjct: 80 YKIYRIFPNG 89
>PSAD_SYNP6 (P23076) Photosystem I reaction center subunit II (Photosystem I 16| kDa polypeptide) (PSI-D) Length = 141 Score = 85.1 bits (209), Expect = 5e-17 Identities = 43/68 (63%), Positives = 51/68 (75%), Gaps = 3/68 (4%) Frame = +2 Query: 11 QVEEFYVITWTSPKEQVFEMPTGGAAIMREGPNLLKPARKEQCLALGNRLRSKYK---IA 181 + EE Y ITWTS KEQVFE+PTGGAA+M EG NLL ARKEQ LALG +LR+K+K + Sbjct: 23 ETEEKYAITWTSTKEQVFELPTGGAAVMHEGDNLLYFARKEQALALGTQLRTKFKPKIES 82 Query: 182 YQFYRVXP 205 Y+ YR P Sbjct: 83 YKIYRFFP 90
>PSAD_SYNVU (P0A422) Photosystem I reaction center subunit II (Photosystem I 16| kDa polypeptide) (PSI-D) Length = 138 Score = 85.1 bits (209), Expect = 5e-17 Identities = 43/66 (65%), Positives = 50/66 (75%), Gaps = 1/66 (1%) Frame = +2 Query: 17 EEFYVITWTSPKEQVFEMPTGGAAIMREGPNLLKPARKEQCLAL-GNRLRSKYKIAYQFY 193 EE Y ITWTSPKEQVFEMPT GAA+MREG NL+ ARKEQCLAL +LR + Y+ Y Sbjct: 24 EEKYAITWTSPKEQVFEMPTAGAAVMREGENLVYFARKEQCLALAAQQLRPRKINDYKIY 83 Query: 194 RVXPNG 211 R+ P+G Sbjct: 84 RIFPDG 89
>PSAD_SYNEN (P0A421) Photosystem I reaction center subunit II (Photosystem I 16| kDa polypeptide) (PSI-D) Length = 138 Score = 85.1 bits (209), Expect = 5e-17 Identities = 43/66 (65%), Positives = 50/66 (75%), Gaps = 1/66 (1%) Frame = +2 Query: 17 EEFYVITWTSPKEQVFEMPTGGAAIMREGPNLLKPARKEQCLAL-GNRLRSKYKIAYQFY 193 EE Y ITWTSPKEQVFEMPT GAA+MREG NL+ ARKEQCLAL +LR + Y+ Y Sbjct: 24 EEKYAITWTSPKEQVFEMPTAGAAVMREGENLVYFARKEQCLALAAQQLRPRKINDYKIY 83 Query: 194 RVXPNG 211 R+ P+G Sbjct: 84 RIFPDG 89
>PSAD_SYNEL (P0A420) Photosystem I reaction center subunit II (Photosystem I 16| kDa polypeptide) (PSI-D) Length = 138 Score = 85.1 bits (209), Expect = 5e-17 Identities = 43/66 (65%), Positives = 50/66 (75%), Gaps = 1/66 (1%) Frame = +2 Query: 17 EEFYVITWTSPKEQVFEMPTGGAAIMREGPNLLKPARKEQCLAL-GNRLRSKYKIAYQFY 193 EE Y ITWTSPKEQVFEMPT GAA+MREG NL+ ARKEQCLAL +LR + Y+ Y Sbjct: 24 EEKYAITWTSPKEQVFEMPTAGAAVMREGENLVYFARKEQCLALAAQQLRPRKINDYKIY 83 Query: 194 RVXPNG 211 R+ P+G Sbjct: 84 RIFPDG 89
>PSAD_CYACA (Q9TLR2) Photosystem I reaction center subunit II (Photosystem I 16| kDa polypeptide) (PSI-D) Length = 140 Score = 84.0 bits (206), Expect = 1e-16 Identities = 39/67 (58%), Positives = 51/67 (76%), Gaps = 1/67 (1%) Frame = +2 Query: 14 VEEFYVITWTSPKEQVFEMPTGGAAIMREGPNLLKPARKEQCLALGNRLRSKYKIA-YQF 190 +EE Y ITW+S E +FE+PTGG A M+ G NLL A+KEQCLALGN+L+ K+KI ++ Sbjct: 27 IEEKYAITWSSKNEDIFEIPTGGVAKMKAGDNLLYLAKKEQCLALGNQLKIKFKILNFKI 86 Query: 191 YRVXPNG 211 YR+ PNG Sbjct: 87 YRIFPNG 93
>PSAD_FREDI (P23808) Photosystem I reaction center subunit II (Photosystem I 16| kDa polypeptide) (PSI-D) Length = 138 Score = 84.0 bits (206), Expect = 1e-16 Identities = 43/70 (61%), Positives = 53/70 (75%), Gaps = 1/70 (1%) Frame = +2 Query: 5 RXQVEEFYVITWTSPKEQVFEMPTGGAAIMREGPNLLKPARKEQCLALGNRLRSKYKIA- 181 + +VEE Y ITWTSPK QVFE+PTGGAA M++G NLL ARKE +ALG +LR K+KI Sbjct: 21 KAEVEEKYAITWTSPKAQVFELPTGGAATMQQGQNLLYLARKEYGIALGGQLR-KFKITD 79 Query: 182 YQFYRVXPNG 211 Y+ YR+ P G Sbjct: 80 YKIYRILPGG 89
>PSAD_ANASP (P58573) Photosystem I reaction center subunit II| Length = 139 Score = 82.0 bits (201), Expect = 4e-16 Identities = 43/66 (65%), Positives = 50/66 (75%), Gaps = 1/66 (1%) Frame = +2 Query: 17 EEFYVITWTSPKEQVFEMPTGGAAIMREGPNLLKPARKEQCLALGNRLRSKYKIA-YQFY 193 EE Y ITWTSPK QVFE+PTGGAA M EG NLL ARKE +ALG +LR K+KI Y+ Y Sbjct: 26 EEKYAITWTSPKAQVFELPTGGAATMHEGENLLYIARKEYGIALGGQLR-KFKITNYKIY 84 Query: 194 RVXPNG 211 R+ P+G Sbjct: 85 RILPSG 90
>PSAD_ANAVT (P31089) Photosystem I reaction center subunit II (Photosystem I 16| kDa polypeptide) (PSI-D) Length = 138 Score = 82.0 bits (201), Expect = 4e-16 Identities = 43/66 (65%), Positives = 50/66 (75%), Gaps = 1/66 (1%) Frame = +2 Query: 17 EEFYVITWTSPKEQVFEMPTGGAAIMREGPNLLKPARKEQCLALGNRLRSKYKIA-YQFY 193 EE Y ITWTSPK QVFE+PTGGAA M EG NLL ARKE +ALG +LR K+KI Y+ Y Sbjct: 25 EEKYAITWTSPKAQVFELPTGGAATMHEGENLLYIARKEYGIALGGQLR-KFKITNYKIY 83 Query: 194 RVXPNG 211 R+ P+G Sbjct: 84 RILPSG 89
>PSAD_GLOVI (Q7NF26) Photosystem I reaction center subunit II| Length = 144 Score = 77.8 bits (190), Expect = 7e-15 Identities = 41/70 (58%), Positives = 49/70 (70%), Gaps = 1/70 (1%) Frame = +2 Query: 5 RXQVEEFYVITWTSPKEQVFEMPTGGAAIMREGPNLLKPARKEQCLALGNRLRSKYKIA- 181 + Q+EE Y+I W S +EQVFEMPTGGAA M G N+L ARKEQC AL +L S +KI Sbjct: 26 KAQIEEKYLIVWNSKEEQVFEMPTGGAATMVAGTNVLYLARKEQCHALHRQLVSTFKIRD 85 Query: 182 YQFYRVXPNG 211 + YRV PNG Sbjct: 86 SKIYRVYPNG 95
>UL14_VZVD (P09295) Hypothetical gene 46 protein| Length = 199 Score = 29.3 bits (64), Expect = 2.9 Identities = 16/44 (36%), Positives = 23/44 (52%) Frame = +2 Query: 50 KEQVFEMPTGGAAIMREGPNLLKPARKEQCLALGNRLRSKYKIA 181 KE+ ++ GGA++ A KE C L N+LRS +IA Sbjct: 29 KERTLDLIRGGASVQDPAFVYAFTAAKEACADLNNQLRSAARIA 72
>CLAP1_HUMAN (Q7Z460) CLIP-associating protein 1 (Cytoplasmic linker-associated| protein 1) (Multiple asters homolog 1) Length = 1538 Score = 28.1 bits (61), Expect = 6.5 Identities = 12/38 (31%), Positives = 21/38 (55%) Frame = -2 Query: 165 ERRRLPRARHCSLRAGLRRLGPSRMMAAPPVGISKTCS 52 +R ++PR++ CS R+G +R P +S+ CS Sbjct: 716 KRSKIPRSQGCSRETSPNRIGLARSSRIPRPSMSQGCS 753 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 14,218,826 Number of Sequences: 219361 Number of extensions: 203399 Number of successful extensions: 587 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 581 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 586 length of database: 80,573,946 effective HSP length: 45 effective length of database: 70,702,701 effective search space used: 1696864824 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
