ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal13m22
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|M98254.1|BLYPSAD Barley PSI-D subunit of photosystem I (PsaD)... 389 e-105
2gb|BC035756.1| Homo sapiens, clone IMAGE:5763894, mRNA 381 e-103
3emb|AJ234406.1|HVU234406 Hordeum vulgare partial mRNA; clone cMW... 369 2e-99
4ref|XM_483783.1| Oryza sativa (japonica cultivar-group), mRNA 226 2e-56
5ref|XM_507339.1| PREDICTED Oryza sativa (japonica cultivar-group... 226 2e-56
6gb|AY224449.1| Oryza sativa (japonica cultivar-group) isolate 23... 226 2e-56
7dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 226 2e-56
8dbj|AP005524.3| Oryza sativa (japonica cultivar-group) genomic D... 226 2e-56
9dbj|AP005544.3| Oryza sativa (japonica cultivar-group) genomic D... 226 2e-56
10dbj|AK120372.1| Oryza sativa (japonica cultivar-group) cDNA clon... 226 2e-56
11dbj|AK072473.1| Oryza sativa (japonica cultivar-group) cDNA clon... 226 2e-56
12dbj|AK061775.1| Oryza sativa (japonica cultivar-group) cDNA clon... 226 2e-56
13gb|AF147726.1|AF147726 Zea mays ferredoxin-binding subunit (psi-... 153 3e-34
14dbj|AK120366.1| Oryza sativa (japonica cultivar-group) cDNA clon... 98 1e-17
15gb|AF335592.1| Chlamydomonas reinhardtii photosystem I subunit (... 92 8e-16
16emb|X79674.1|CRPSAD C.reinhardtii PsaD mRNA 92 8e-16
17emb|X74419.1|CRPSADA C.reinhardtii psaD mRNA for PSI reaction ce... 92 8e-16
18emb|AJ132477.1|CPA132477 Cyanophora paradoxa mRNA for photosyste... 58 1e-05
19dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome 54 2e-04
20emb|BX569694.1| Synechococcus sp. WH8102 complete genome; segmen... 44 0.17
21emb|BX640451.1| Bordetella bronchiseptica strain RB50, complete ... 42 0.68
22emb|BX640412.1| Bordetella pertussis strain Tohama I, complete g... 42 0.68
23gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome 42 0.68
24gb|CP000009.1| Gluconobacter oxydans 621H, complete genome 42 0.68
25emb|AL138995.5|CNS01DX0 Human chromosome 14 DNA sequence BAC C-2... 42 0.68
26gb|CP000110.1| Synechococcus sp. CC9605, complete genome 40 2.7
27ref|XM_481192.1| Oryza sativa (japonica cultivar-group), mRNA 40 2.7
28gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome 40 2.7
29gb|AY286122.1| Cyanidioschyzon merolae DBV201 chromosome 1, comp... 40 2.7
30gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complet... 40 2.7
31ref|XM_750264.1| Aspergillus fumigatus Af293 NAD-binding Rossman... 40 2.7
32gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome 40 2.7
33emb|AL939116.1|SCO939116 Streptomyces coelicolor A3(2) complete ... 40 2.7
34gb|AC102391.12| Mus musculus chromosome 18, clone RP24-62K22, co... 40 2.7
35dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 2.7
36dbj|AP005163.3| Oryza sativa (japonica cultivar-group) genomic D... 40 2.7
37dbj|AP004130.2| Oryza sativa (japonica cultivar-group) genomic D... 40 2.7
38dbj|AK109468.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 2.7
39gb|AF068843.1|AF068843 Streptomyces coelicolor coenzyme B12 depe... 40 2.7
40gb|AC161481.4| Mus musculus chromosome 18, clone RP23-336C20, co... 40 2.7 
>gb|M98254.1|BLYPSAD Barley PSI-D subunit of photosystem I (PsaD) mRNA, complete cds
          Length = 810

 Score =  389 bits (196), Expect = e-105
 Identities = 201/203 (99%)
 Strand = Plus / Plus

                                                                       
Query: 9   cccaggtcgaggagttttacgtcatcacctggacctcccccaaggagcaggtcttcgaga 68
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 cccaggtcgaggagttttacgtcatcacctggacctcccccaaggagcaggtcttcgaga 364

                                                                       
Query: 69  tgcccaccggcggcgccgccatcatgcgcgagggccccaacctcctcaagcccgcccgca 128
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 365 tgcccaccggcggcgccgccatcatgcgcgagggccccaacctcctcaagctcgcccgca 424

                                                                       
Query: 129 aggagcagtgcctcgccctcggcaaccgcctccgctccaagtacaagatcgcctaccagt 188
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 aggagcagtgcctcgccctcggcaaccgcctccgctccaagtacaagatcgcctaccagt 484

                                  
Query: 189 tctaccgcgtcttncccaacggc 211
           ||||||||||||| |||||||||
Sbjct: 485 tctaccgcgtcttccccaacggc 507
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>gb|BC035756.1| Homo sapiens, clone IMAGE:5763894, mRNA
          Length = 864

 Score =  381 bits (192), Expect = e-103
 Identities = 200/203 (98%)
 Strand = Plus / Plus

                                                                       
Query: 9   cccaggtcgaggagttttacgtcatcacctggacctcccccaaggagcaggtcttcgaga 68
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 cccaggtcgaggagttctacgtcatcacctggacctcccccaaggagcaggtcttcgaga 347

                                                                       
Query: 69  tgcccaccggcggcgccgccatcatgcgcgagggccccaacctcctcaagcccgcccgca 128
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 348 tgcccaccggcggcgccgccatcatgcgcgagggccccaacctcctcaagctcgcccgca 407

                                                                       
Query: 129 aggagcagtgcctcgccctcggcaaccgcctccgctccaagtacaagatcgcctaccagt 188
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 aggagcagtgcctcgccctcggcaaccgcctccgctccaagtacaagatcgcctaccagt 467

                                  
Query: 189 tctaccgcgtcttncccaacggc 211
           ||||||||||||| |||||||||
Sbjct: 468 tctaccgcgtcttccccaacggc 490
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>emb|AJ234406.1|HVU234406 Hordeum vulgare partial mRNA; clone cMWG0654
          Length = 698

 Score =  369 bits (186), Expect = 2e-99
 Identities = 197/201 (98%)
 Strand = Plus / Minus

                                                                       
Query: 9   cccaggtcgaggagttttacgtcatcacctggacctcccccaaggagcaggtcttcgaga 68
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 cccaggtcgaggagttctacgtcatcacctggacctcccccaaggagcaggtcttcgaga 503

                                                                       
Query: 69  tgcccaccggcggcgccgccatcatgcgcgagggccccaacctcctcaagcccgcccgca 128
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 502 tgcccaccggcggcgccgccatcatgcgcgagggccccaacctcctcaagctcgcccgca 443

                                                                       
Query: 129 aggagcagtgcctcgccctcggcaaccgcctccgctccaagtacaagatcgcctaccagt 188
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 aggagcagtgcctcgccctcggcaaccgcctccgctccaagtacaagatcgcctaccagt 383

                                
Query: 189 tctaccgcgtcttncccaacg 209
           ||||||||||||  |||||||
Sbjct: 382 tctaccgcgtctaccccaacg 362
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>ref|XM_483783.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 831

 Score =  226 bits (114), Expect = 2e-56
 Identities = 176/197 (89%)
 Strand = Plus / Plus

                                                                       
Query: 11  caggtcgaggagttttacgtcatcacctggacctcccccaaggagcaggtcttcgagatg 70
           ||||| |||||||| ||||||||||| ||||| || |||||||||||||| |||||||||
Sbjct: 305 caggtggaggagttctacgtcatcacatggacgtcgcccaaggagcaggtgttcgagatg 364

                                                                       
Query: 71  cccaccggcggcgccgccatcatgcgcgagggccccaacctcctcaagcccgcccgcaag 130
           ||||| ||||||||||||||||||||||||||||||||||| || ||||  ||| | |||
Sbjct: 365 cccacgggcggcgccgccatcatgcgcgagggccccaacctgctgaagctggccaggaag 424

                                                                       
Query: 131 gagcagtgcctcgccctcggcaaccgcctccgctccaagtacaagatcgcctaccagttc 190
           ||||||||||| ||||| |||| | | |||||||||||||||||||||  ||||||||||
Sbjct: 425 gagcagtgcctggccctgggcaccaggctccgctccaagtacaagatcaactaccagttc 484

                            
Query: 191 taccgcgtcttncccaa 207
           ||||||||||| |||||
Sbjct: 485 taccgcgtcttccccaa 501
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>ref|XM_507339.1| PREDICTED Oryza sativa (japonica cultivar-group), P0604E01.24 mRNA
          Length = 855

 Score =  226 bits (114), Expect = 2e-56
 Identities = 176/197 (89%)
 Strand = Plus / Plus

                                                                       
Query: 11  caggtcgaggagttttacgtcatcacctggacctcccccaaggagcaggtcttcgagatg 70
           ||||| |||||||| ||||||||||| ||||| || |||||||||||||| |||||||||
Sbjct: 329 caggtggaggagttctacgtcatcacatggacgtcgcccaaggagcaggtgttcgagatg 388

                                                                       
Query: 71  cccaccggcggcgccgccatcatgcgcgagggccccaacctcctcaagcccgcccgcaag 130
           ||||| ||||||||||||||||||||||||||||||||||| || ||||  ||| | |||
Sbjct: 389 cccacgggcggcgccgccatcatgcgcgagggccccaacctgctgaagctggccaggaag 448

                                                                       
Query: 131 gagcagtgcctcgccctcggcaaccgcctccgctccaagtacaagatcgcctaccagttc 190
           ||||||||||| ||||| |||| | | |||||||||||||||||||||  ||||||||||
Sbjct: 449 gagcagtgcctggccctgggcaccaggctccgctccaagtacaagatcaactaccagttc 508

                            
Query: 191 taccgcgtcttncccaa 207
           ||||||||||| |||||
Sbjct: 509 taccgcgtcttccccaa 525
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>gb|AY224449.1| Oryza sativa (japonica cultivar-group) isolate 23061 chloroplast
           photosystem I reaction center subunit II precursor-like
           protein mRNA, complete cds
          Length = 612

 Score =  226 bits (114), Expect = 2e-56
 Identities = 176/197 (89%)
 Strand = Plus / Plus

                                                                       
Query: 11  caggtcgaggagttttacgtcatcacctggacctcccccaaggagcaggtcttcgagatg 70
           ||||| |||||||| ||||||||||| ||||| || |||||||||||||| |||||||||
Sbjct: 262 caggtggaggagttctacgtcatcacatggacgtcgcccaaggagcaggtgttcgagatg 321

                                                                       
Query: 71  cccaccggcggcgccgccatcatgcgcgagggccccaacctcctcaagcccgcccgcaag 130
           ||||| ||||||||||||||||||||||||||||||||||| || ||||  ||| | |||
Sbjct: 322 cccacgggcggcgccgccatcatgcgcgagggccccaacctgctgaagctggccaggaag 381

                                                                       
Query: 131 gagcagtgcctcgccctcggcaaccgcctccgctccaagtacaagatcgcctaccagttc 190
           ||||||||||| ||||| |||| | | |||||||||||||||||||||  ||||||||||
Sbjct: 382 gagcagtgcctggccctgggcaccaggctccgctccaagtacaagatcaactaccagttc 441

                            
Query: 191 taccgcgtcttncccaa 207
           ||||||||||| |||||
Sbjct: 442 taccgcgtcttccccaa 458
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score =  226 bits (114), Expect = 2e-56
 Identities = 176/197 (89%)
 Strand = Plus / Minus

                                                                            
Query: 11       caggtcgaggagttttacgtcatcacctggacctcccccaaggagcaggtcttcgagatg 70
                ||||| |||||||| ||||||||||| ||||| || |||||||||||||| |||||||||
Sbjct: 28076670 caggtggaggagttctacgtcatcacatggacgtcgcccaaggagcaggtgttcgagatg 28076611

                                                                            
Query: 71       cccaccggcggcgccgccatcatgcgcgagggccccaacctcctcaagcccgcccgcaag 130
                ||||| ||||||||||||||||||||||||||||||||||| || ||||  ||| | |||
Sbjct: 28076610 cccacgggcggcgccgccatcatgcgcgagggccccaacctgctgaagctggccaggaag 28076551

                                                                            
Query: 131      gagcagtgcctcgccctcggcaaccgcctccgctccaagtacaagatcgcctaccagttc 190
                ||||||||||| ||||| |||| | | |||||||||||||||||||||  ||||||||||
Sbjct: 28076550 gagcagtgcctggccctgggcaccaggctccgctccaagtacaagatcaactaccagttc 28076491

                                 
Query: 191      taccgcgtcttncccaa 207
                ||||||||||| |||||
Sbjct: 28076490 taccgcgtcttccccaa 28076474



 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 70       gcccaccggcggcgccgcca 89
                ||||||||||||||||||||
Sbjct: 10502239 gcccaccggcggcgccgcca 10502258
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>dbj|AP005524.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0562A06
          Length = 154198

 Score =  226 bits (114), Expect = 2e-56
 Identities = 176/197 (89%)
 Strand = Plus / Minus

                                                                          
Query: 11     caggtcgaggagttttacgtcatcacctggacctcccccaaggagcaggtcttcgagatg 70
              ||||| |||||||| ||||||||||| ||||| || |||||||||||||| |||||||||
Sbjct: 154162 caggtggaggagttctacgtcatcacatggacgtcgcccaaggagcaggtgttcgagatg 154103

                                                                          
Query: 71     cccaccggcggcgccgccatcatgcgcgagggccccaacctcctcaagcccgcccgcaag 130
              ||||| ||||||||||||||||||||||||||||||||||| || ||||  ||| | |||
Sbjct: 154102 cccacgggcggcgccgccatcatgcgcgagggccccaacctgctgaagctggccaggaag 154043

                                                                          
Query: 131    gagcagtgcctcgccctcggcaaccgcctccgctccaagtacaagatcgcctaccagttc 190
              ||||||||||| ||||| |||| | | |||||||||||||||||||||  ||||||||||
Sbjct: 154042 gagcagtgcctggccctgggcaccaggctccgctccaagtacaagatcaactaccagttc 153983

                               
Query: 191    taccgcgtcttncccaa 207
              ||||||||||| |||||
Sbjct: 153982 taccgcgtcttccccaa 153966
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>dbj|AP005544.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0604E01
          Length = 159049

 Score =  226 bits (114), Expect = 2e-56
 Identities = 176/197 (89%)
 Strand = Plus / Minus

                                                                         
Query: 11    caggtcgaggagttttacgtcatcacctggacctcccccaaggagcaggtcttcgagatg 70
             ||||| |||||||| ||||||||||| ||||| || |||||||||||||| |||||||||
Sbjct: 74165 caggtggaggagttctacgtcatcacatggacgtcgcccaaggagcaggtgttcgagatg 74106

                                                                         
Query: 71    cccaccggcggcgccgccatcatgcgcgagggccccaacctcctcaagcccgcccgcaag 130
             ||||| ||||||||||||||||||||||||||||||||||| || ||||  ||| | |||
Sbjct: 74105 cccacgggcggcgccgccatcatgcgcgagggccccaacctgctgaagctggccaggaag 74046

                                                                         
Query: 131   gagcagtgcctcgccctcggcaaccgcctccgctccaagtacaagatcgcctaccagttc 190
             ||||||||||| ||||| |||| | | |||||||||||||||||||||  ||||||||||
Sbjct: 74045 gagcagtgcctggccctgggcaccaggctccgctccaagtacaagatcaactaccagttc 73986

                              
Query: 191   taccgcgtcttncccaa 207
             ||||||||||| |||||
Sbjct: 73985 taccgcgtcttccccaa 73969
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>dbj|AK120372.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013070L10, full
           insert sequence
          Length = 855

 Score =  226 bits (114), Expect = 2e-56
 Identities = 176/197 (89%)
 Strand = Plus / Plus

                                                                       
Query: 11  caggtcgaggagttttacgtcatcacctggacctcccccaaggagcaggtcttcgagatg 70
           ||||| |||||||| ||||||||||| ||||| || |||||||||||||| |||||||||
Sbjct: 329 caggtggaggagttctacgtcatcacatggacgtcgcccaaggagcaggtgttcgagatg 388

                                                                       
Query: 71  cccaccggcggcgccgccatcatgcgcgagggccccaacctcctcaagcccgcccgcaag 130
           ||||| ||||||||||||||||||||||||||||||||||| || ||||  ||| | |||
Sbjct: 389 cccacgggcggcgccgccatcatgcgcgagggccccaacctgctgaagctggccaggaag 448

                                                                       
Query: 131 gagcagtgcctcgccctcggcaaccgcctccgctccaagtacaagatcgcctaccagttc 190
           ||||||||||| ||||| |||| | | |||||||||||||||||||||  ||||||||||
Sbjct: 449 gagcagtgcctggccctgggcaccaggctccgctccaagtacaagatcaactaccagttc 508

                            
Query: 191 taccgcgtcttncccaa 207
           ||||||||||| |||||
Sbjct: 509 taccgcgtcttccccaa 525
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>dbj|AK072473.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023114B22, full
            insert sequence
          Length = 2756

 Score =  226 bits (114), Expect = 2e-56
 Identities = 176/197 (89%)
 Strand = Plus / Plus

                                                                        
Query: 11   caggtcgaggagttttacgtcatcacctggacctcccccaaggagcaggtcttcgagatg 70
            ||||| |||||||| ||||||||||| ||||| || |||||||||||||| |||||||||
Sbjct: 2230 caggtggaggagttctacgtcatcacatggacgtcgcccaaggagcaggtgttcgagatg 2289

                                                                        
Query: 71   cccaccggcggcgccgccatcatgcgcgagggccccaacctcctcaagcccgcccgcaag 130
            ||||| ||||||||||||||||||||||||||||||||||| || ||||  ||| | |||
Sbjct: 2290 cccacgggcggcgccgccatcatgcgcgagggccccaacctgctgaagctggccaggaag 2349

                                                                        
Query: 131  gagcagtgcctcgccctcggcaaccgcctccgctccaagtacaagatcgcctaccagttc 190
            ||||||||||| ||||| |||| | | |||||||||||||||||||||  ||||||||||
Sbjct: 2350 gagcagtgcctggccctgggcaccaggctccgctccaagtacaagatcaactaccagttc 2409

                             
Query: 191  taccgcgtcttncccaa 207
            ||||||||||| |||||
Sbjct: 2410 taccgcgtcttccccaa 2426
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>dbj|AK061775.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-D04, full
           insert sequence
          Length = 831

 Score =  226 bits (114), Expect = 2e-56
 Identities = 176/197 (89%)
 Strand = Plus / Plus

                                                                       
Query: 11  caggtcgaggagttttacgtcatcacctggacctcccccaaggagcaggtcttcgagatg 70
           ||||| |||||||| ||||||||||| ||||| || |||||||||||||| |||||||||
Sbjct: 305 caggtggaggagttctacgtcatcacatggacgtcgcccaaggagcaggtgttcgagatg 364

                                                                       
Query: 71  cccaccggcggcgccgccatcatgcgcgagggccccaacctcctcaagcccgcccgcaag 130
           ||||| ||||||||||||||||||||||||||||||||||| || ||||  ||| | |||
Sbjct: 365 cccacgggcggcgccgccatcatgcgcgagggccccaacctgctgaagctggccaggaag 424

                                                                       
Query: 131 gagcagtgcctcgccctcggcaaccgcctccgctccaagtacaagatcgcctaccagttc 190
           ||||||||||| ||||| |||| | | |||||||||||||||||||||  ||||||||||
Sbjct: 425 gagcagtgcctggccctgggcaccaggctccgctccaagtacaagatcaactaccagttc 484

                            
Query: 191 taccgcgtcttncccaa 207
           ||||||||||| |||||
Sbjct: 485 taccgcgtcttccccaa 501
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>gb|AF147726.1|AF147726 Zea mays ferredoxin-binding subunit (psi-d1) mRNA, complete cds
          Length = 646

 Score =  153 bits (77), Expect = 3e-34
 Identities = 115/128 (89%)
 Strand = Plus / Plus

                                                                       
Query: 84  ccgccatcatgcgcgagggccccaacctcctcaagcccgcccgcaaggagcagtgcctcg 143
           ||||||||||||| ||||| ||||||||||| ||||  || |||||||||||||||||||
Sbjct: 113 ccgccatcatgcgggaggggcccaacctcctgaagctggcgcgcaaggagcagtgcctcg 172

                                                                       
Query: 144 ccctcggcaaccgcctccgctccaagtacaagatcgcctaccagttctaccgcgtcttnc 203
           | ||||||| | | || |||||||||||||||||| |||||||||||||||||||||| |
Sbjct: 173 cgctcggcaccaggctgcgctccaagtacaagatcacctaccagttctaccgcgtcttcc 232

                   
Query: 204 ccaacggc 211
           ||||||||
Sbjct: 233 ccaacggc 240
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>dbj|AK120366.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013069H06, full
           insert sequence
          Length = 397

 Score = 97.6 bits (49), Expect = 1e-17
 Identities = 72/80 (90%)
 Strand = Plus / Plus

                                                                       
Query: 128 aaggagcagtgcctcgccctcggcaaccgcctccgctccaagtacaagatcgcctaccag 187
           |||||||||||||| ||||| |||| | | |||||||||||||||||||||  |||||||
Sbjct: 13  aaggagcagtgcctggccctgggcaccaggctccgctccaagtacaagatcaactaccag 72

                               
Query: 188 ttctaccgcgtcttncccaa 207
           |||||||||||||| |||||
Sbjct: 73  ttctaccgcgtcttccccaa 92
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>gb|AF335592.1| Chlamydomonas reinhardtii photosystem I subunit (PsaD) gene, complete
            cds; nuclear gene for chloroplast product
          Length = 2046

 Score = 91.7 bits (46), Expect = 8e-16
 Identities = 85/98 (86%)
 Strand = Plus / Plus

                                                                        
Query: 50   aaggagcaggtcttcgagatgcccaccggcggcgccgccatcatgcgcgagggccccaac 109
            ||||||||| |||||||||||||||| ||||| ||||| ||||||||| |||||||||||
Sbjct: 1097 aaggagcagatcttcgagatgcccactggcggtgccgctatcatgcgccagggccccaac 1156

                                                  
Query: 110  ctcctcaagcccgcccgcaaggagcagtgcctcgccct 147
            || || |||  || |   ||||||||||||||||||||
Sbjct: 1157 ctgctgaagttcggcaagaaggagcagtgcctcgccct 1194
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>emb|X79674.1|CRPSAD C.reinhardtii PsaD mRNA
          Length = 991

 Score = 91.7 bits (46), Expect = 8e-16
 Identities = 85/98 (86%)
 Strand = Plus / Plus

                                                                       
Query: 50  aaggagcaggtcttcgagatgcccaccggcggcgccgccatcatgcgcgagggccccaac 109
           ||||||||| |||||||||||||||| ||||| ||||| ||||||||| |||||||||||
Sbjct: 292 aaggagcagatcttcgagatgcccactggcggtgccgctatcatgcgccagggccccaac 351

                                                 
Query: 110 ctcctcaagcccgcccgcaaggagcagtgcctcgccct 147
           || || |||  || |   ||||||||||||||||||||
Sbjct: 352 ctgctgaagttcggcaagaaggagcagtgcctcgccct 389
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>emb|X74419.1|CRPSADA C.reinhardtii psaD mRNA for PSI reaction center, subunit II
          Length = 978

 Score = 91.7 bits (46), Expect = 8e-16
 Identities = 85/98 (86%)
 Strand = Plus / Plus

                                                                       
Query: 50  aaggagcaggtcttcgagatgcccaccggcggcgccgccatcatgcgcgagggccccaac 109
           ||||||||| |||||||||||||||| ||||| ||||| ||||||||| |||||||||||
Sbjct: 286 aaggagcagatcttcgagatgcccactggcggtgccgctatcatgcgccagggccccaac 345

                                                 
Query: 110 ctcctcaagcccgcccgcaaggagcagtgcctcgccct 147
           || || |||  || |   ||||||||||||||||||||
Sbjct: 346 ctgctgaagttcggcaagaaggagcagtgcctcgccct 383
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>emb|AJ132477.1|CPA132477 Cyanophora paradoxa mRNA for photosystem I reaction centre subunit
           II precursor
          Length = 958

 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 77/93 (82%)
 Strand = Plus / Plus

                                                                       
Query: 59  gtcttcgagatgcccaccggcggcgccgccatcatgcgcgagggccccaacctcctcaag 118
           ||||||||| | || |||||||||||||| ||||||||||  |||   ||||| |||   
Sbjct: 351 gtcttcgagctcccgaccggcggcgccgcgatcatgcgcgctggcgagaacctgctccgc 410

                                            
Query: 119 cccgcccgcaaggagcagtgcctcgccctcggc 151
           | ||||||||||||||||||| | |||||||||
Sbjct: 411 ctcgcccgcaaggagcagtgcattgccctcggc 443
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>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome
          Length = 4659019

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                              
Query: 51      aggagcaggtcttcgagatgcccaccggcgg 81
               |||||||||||||||||||||| ||||||||
Sbjct: 3909290 aggagcaggtcttcgagatgccgaccggcgg 3909320
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>emb|BX569694.1| Synechococcus sp. WH8102 complete genome; segment 6/7
          Length = 349122

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                            
Query: 121    cgcccgcaaggagcagtgcctcgccctcgg 150
              |||||||||||| |||||||| ||||||||
Sbjct: 199488 cgcccgcaaggaacagtgccttgccctcgg 199517
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>emb|BX640451.1| Bordetella bronchiseptica strain RB50, complete genome; segment 15/16
          Length = 343473

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 76     cggcggcgccgccatcatgcgcgag 100
              ||||||||||| |||||||||||||
Sbjct: 141409 cggcggcgccggcatcatgcgcgag 141433
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>emb|BX640412.1| Bordetella pertussis strain Tohama I, complete genome; segment 2/12
          Length = 348171

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 76     cggcggcgccgccatcatgcgcgag 100
              ||||||||||| |||||||||||||
Sbjct: 297199 cggcggcgccggcatcatgcgcgag 297223
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>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome
          Length = 2932766

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 68     atgcccaccggcggcgccgcc 88
              |||||||||||||||||||||
Sbjct: 552064 atgcccaccggcggcgccgcc 552084
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>gb|CP000009.1| Gluconobacter oxydans 621H, complete genome
          Length = 2702173

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                            
Query: 72      ccaccggcggcgccgccatcatgcgcgag 100
               ||||| || ||||||||||||||||||||
Sbjct: 2047550 ccacccgctgcgccgccatcatgcgcgag 2047522
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>emb|AL138995.5|CNS01DX0 Human chromosome 14 DNA sequence BAC C-2588E21 of library CalTech-D
             from chromosome 14 of Homo sapiens (Human), complete
             sequence
          Length = 163312

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 39    ggacctcccccaaggagcagg 59
             |||||||||||||||||||||
Sbjct: 93380 ggacctcccccaaggagcagg 93360
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>gb|CP000110.1| Synechococcus sp. CC9605, complete genome
          Length = 2510659

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 125    cgcaaggagcagtgcctcgccctcggca 152
              ||||| || |||||||||||||||||||
Sbjct: 401357 cgcaaagaacagtgcctcgccctcggca 401330
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>ref|XM_481192.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 582

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 70  gcccaccggcggcgccgcca 89
           ||||||||||||||||||||
Sbjct: 279 gcccaccggcggcgccgcca 298
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>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome
          Length = 3814139

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 73     caccggcggcgccgccatca 92
              ||||||||||||||||||||
Sbjct: 803767 caccggcggcgccgccatca 803748



 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 73     caccggcggcgccgccatca 92
              ||||||||||||||||||||
Sbjct: 802729 caccggcggcgccgccatca 802710
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>gb|AY286122.1| Cyanidioschyzon merolae DBV201 chromosome 1, complete sequence
          Length = 422021

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 176    atcgcctaccagttctaccgcgtc 199
              ||||||||||||| ||||||||||
Sbjct: 104579 atcgcctaccagtcctaccgcgtc 104556
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>gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complete sequence
          Length = 2580084

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 68      atgcccaccggcggcgccgc 87
               ||||||||||||||||||||
Sbjct: 1855671 atgcccaccggcggcgccgc 1855690
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>ref|XM_750264.1| Aspergillus fumigatus Af293 NAD-binding Rossmann fold
           oxidoreductase (Afu2g10240) partial mRNA
          Length = 1068

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 82  cgccgccatcatgcgcgagg 101
           ||||||||||||||||||||
Sbjct: 741 cgccgccatcatgcgcgagg 722
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>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 74     accggcggcgccgccatcatgcgcgagg 101
              |||||||||| |||| ||||||||||||
Sbjct: 338750 accggcggcggcgccttcatgcgcgagg 338723
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>emb|AL939116.1|SCO939116 Streptomyces coelicolor A3(2) complete genome; segment 13/29
          Length = 293050

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 48    ccaaggagcaggtcttcgag 67
             ||||||||||||||||||||
Sbjct: 80239 ccaaggagcaggtcttcgag 80220
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>gb|AC102391.12| Mus musculus chromosome 18, clone RP24-62K22, complete sequence
          Length = 196455

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 35    acctggacctcccccaagga 54
             ||||||||||||||||||||
Sbjct: 28936 acctggacctcccccaagga 28955
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 74     accggcggcgccgccatcatgcgcgagg 101
              |||||||||| |||| ||||||||||||
Sbjct: 183510 accggcggcggcgccttcatgcgcgagg 183483
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>dbj|AP005163.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OSJNBa0053M06
          Length = 175416

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 70     gcccaccggcggcgccgcca 89
              ||||||||||||||||||||
Sbjct: 124830 gcccaccggcggcgccgcca 124849
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>dbj|AP004130.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1014_B05
          Length = 121853

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 70    gcccaccggcggcgccgcca 89
             ||||||||||||||||||||
Sbjct: 21707 gcccaccggcggcgccgcca 21726
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>dbj|AK109468.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-128-C06, full
            insert sequence
          Length = 1654

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 70   gcccaccggcggcgccgcca 89
            ||||||||||||||||||||
Sbjct: 1015 gcccaccggcggcgccgcca 1034
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>gb|AF068843.1|AF068843 Streptomyces coelicolor coenzyme B12 dependent isobutyl CoA
           mutase-like protien, UDP-MurNAc L-alanine ligase-like
           protein, and dihydroxy-acid dehydratase (ilvD) genes,
           complete cds
          Length = 2689

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 48  ccaaggagcaggtcttcgag 67
           ||||||||||||||||||||
Sbjct: 95  ccaaggagcaggtcttcgag 114
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>gb|AC161481.4| Mus musculus chromosome 18, clone RP23-336C20, complete sequence
          Length = 210643

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 35     acctggacctcccccaagga 54
              ||||||||||||||||||||
Sbjct: 146664 acctggacctcccccaagga 146683


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,160,509
Number of Sequences: 3902068
Number of extensions: 1160509
Number of successful extensions: 90576
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 89639
Number of HSP's gapped (non-prelim): 937
length of query: 211
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 189
effective length of database: 17,147,199,772
effective search space: 3240820756908
effective search space used: 3240820756908
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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