ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal14b04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_475819.1| Oryza sativa (japonica cultivar-group), predic... 276 5e-71
2dbj|AK071703.1| Oryza sativa (japonica cultivar-group) cDNA clon... 276 5e-71
3dbj|AK071306.1| Oryza sativa (japonica cultivar-group) cDNA clon... 276 5e-71
4dbj|AK060785.1| Oryza sativa (japonica cultivar-group) cDNA clon... 264 2e-67
5gb|AC104713.3| Oryza sativa (japonica cultivar-group) chromosome... 149 8e-33
6dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 149 8e-33
7ref|XM_522861.1| PREDICTED: Pan troglodytes chromosome 14 open r... 40 5.2
8ref|NM_001035101.1| Bos taurus thioredoxin-like (TXNL2), mRNA 40 5.2
9gb|BT021690.1| Bos taurus thioredoxin-like 2 (TXNL2), mRNA, comp... 40 5.2
10emb|CT025272.2| Xenopus tropicalis finished cDNA, clone TEgg137j20 40 5.2
11ref|XM_810332.1| Trypanosoma cruzi strain CL Brener hypothetical... 40 5.2
12gb|AC108945.4| Mus musculus BAC clone RP23-119J11 from 15, compl... 40 5.2
13gb|AC110374.3| Mus musculus BAC clone RP23-293P18 from 15, compl... 40 5.2
14ref|NM_001004870.1| Xenopus tropicalis MGC79624 protein (MGC7962... 40 5.2
15gb|AC020595.7| Homo sapiens BAC clone RP11-358M9 from 2, complet... 40 5.2
16emb|BX000428.10| Mouse DNA sequence from clone RP23-474G7 on chr... 40 5.2
17ref|XM_552209.1| Anopheles gambiae str. PEST ENSANGP00000029550 ... 40 5.2
18gb|BC075104.1| Xenopus tropicalis MGC79624 protein, mRNA (cDNA c... 40 5.2
19gb|AY609618.1| Sus scrofa clone Clu_21370.scr.msk.p1.Contig5, mR... 40 5.2 
>ref|XM_475819.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1077

 Score =  276 bits (139), Expect = 5e-71
 Identities = 313/371 (84%)
 Strand = Plus / Plus

                                                                       
Query: 15  tccatgggtgccatgatttcctgcaaactggcggcgatggcgcctcaccggctgtcctcg 74
           |||||||| || ||||| |||||||| ||||| || |||||||| ||| || | | ||||
Sbjct: 382 tccatgggcgcgatgatatcctgcaagctggcagccatggcgccgcacaggatttgctcg 441

                                                                       
Query: 75  ctggcattgctgaacgtcaccggcggtgggatggagtgtttccccaaggtagatggacag 134
            |||| ||||| || || || || |||||  |  |||| ||||| ||| ||||||| |||
Sbjct: 442 ttggcgttgcttaatgttactggaggtggcttccagtgcttcccgaagttagatgggcag 501

                                                                       
Query: 135 atgctctccctcgcgttccggttcttaagggccagaactccagagcaaagagctctagtc 194
           |||||||| || || ||||| ||||||||||| |||||||||||  |||||||||| || 
Sbjct: 502 atgctctcgcttgcattccgtttcttaagggcaagaactccagaagaaagagctctggta 561

                                                                       
Query: 195 gatttggaaacccactatacgaaggagtaccttgatgaggaagttgaatcctgcacaagg 254
           |||||||||||||| ||||| ||||| || ||||||||| |||||| ||| ||||| |||
Sbjct: 562 gatttggaaacccattatacaaaggaatatcttgatgagaaagttggatcatgcacgagg 621

                                                                       
Query: 255 agagcgatcctgtataaggaatatgtgaaaggcatatcatctacagggatgcaatgtaat 314
           ||| | ||||| ||| | ||||||||||| ||||||||||| ||||||||||| | ||| 
Sbjct: 622 agaacaatcctctatcaagaatatgtgaagggcatatcatcgacagggatgcagtctaac 681

                                                                       
Query: 315 tgcgggtttgaaggtcaaattaacgcatgctggactcacaaagtgacaactaaagaacta 374
           || ||||||||||||||| |||| |||||||||||||||||  |||||||||||||||||
Sbjct: 682 tgtgggtttgaaggtcaagttaatgcatgctggactcacaatatgacaactaaagaacta 741

                      
Query: 375 gatacaattcg 385
           |||||||||||
Sbjct: 742 gatacaattcg 752
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>dbj|AK071703.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023112L03, full
           insert sequence
          Length = 1561

 Score =  276 bits (139), Expect = 5e-71
 Identities = 313/371 (84%)
 Strand = Plus / Plus

                                                                       
Query: 15  tccatgggtgccatgatttcctgcaaactggcggcgatggcgcctcaccggctgtcctcg 74
           |||||||| || ||||| |||||||| ||||| || |||||||| ||| || | | ||||
Sbjct: 528 tccatgggcgcgatgatatcctgcaagctggcagccatggcgccgcacaggatttgctcg 587

                                                                       
Query: 75  ctggcattgctgaacgtcaccggcggtgggatggagtgtttccccaaggtagatggacag 134
            |||| ||||| || || || || |||||  |  |||| ||||| ||| ||||||| |||
Sbjct: 588 ttggcgttgcttaatgttactggaggtggcttccagtgcttcccgaagttagatgggcag 647

                                                                       
Query: 135 atgctctccctcgcgttccggttcttaagggccagaactccagagcaaagagctctagtc 194
           |||||||| || || ||||| ||||||||||| |||||||||||  |||||||||| || 
Sbjct: 648 atgctctcgcttgcattccgtttcttaagggcaagaactccagaagaaagagctctggta 707

                                                                       
Query: 195 gatttggaaacccactatacgaaggagtaccttgatgaggaagttgaatcctgcacaagg 254
           |||||||||||||| ||||| ||||| || ||||||||| |||||| ||| ||||| |||
Sbjct: 708 gatttggaaacccattatacaaaggaatatcttgatgagaaagttggatcatgcacgagg 767

                                                                       
Query: 255 agagcgatcctgtataaggaatatgtgaaaggcatatcatctacagggatgcaatgtaat 314
           ||| | ||||| ||| | ||||||||||| ||||||||||| ||||||||||| | ||| 
Sbjct: 768 agaacaatcctctatcaagaatatgtgaagggcatatcatcgacagggatgcagtctaac 827

                                                                       
Query: 315 tgcgggtttgaaggtcaaattaacgcatgctggactcacaaagtgacaactaaagaacta 374
           || ||||||||||||||| |||| |||||||||||||||||  |||||||||||||||||
Sbjct: 828 tgtgggtttgaaggtcaagttaatgcatgctggactcacaatatgacaactaaagaacta 887

                      
Query: 375 gatacaattcg 385
           |||||||||||
Sbjct: 888 gatacaattcg 898
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>dbj|AK071306.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023088C20, full
            insert sequence
          Length = 1860

 Score =  276 bits (139), Expect = 5e-71
 Identities = 313/371 (84%)
 Strand = Plus / Plus

                                                                        
Query: 15   tccatgggtgccatgatttcctgcaaactggcggcgatggcgcctcaccggctgtcctcg 74
            |||||||| || ||||| |||||||| ||||| || |||||||| ||| || | | ||||
Sbjct: 701  tccatgggcgcgatgatatcctgcaagctggcagccatggcgccgcacaggatttgctcg 760

                                                                        
Query: 75   ctggcattgctgaacgtcaccggcggtgggatggagtgtttccccaaggtagatggacag 134
             |||| ||||| || || || || |||||  |  |||| ||||| ||| ||||||| |||
Sbjct: 761  ttggcgttgcttaatgttactggaggtggcttccagtgcttcccgaagttagatgggcag 820

                                                                        
Query: 135  atgctctccctcgcgttccggttcttaagggccagaactccagagcaaagagctctagtc 194
            |||||||| || || ||||| ||||||||||| |||||||||||  |||||||||| || 
Sbjct: 821  atgctctcgcttgcattccgtttcttaagggcaagaactccagaagaaagagctctggta 880

                                                                        
Query: 195  gatttggaaacccactatacgaaggagtaccttgatgaggaagttgaatcctgcacaagg 254
            |||||||||||||| ||||| ||||| || ||||||||| |||||| ||| ||||| |||
Sbjct: 881  gatttggaaacccattatacaaaggaatatcttgatgagaaagttggatcatgcacgagg 940

                                                                        
Query: 255  agagcgatcctgtataaggaatatgtgaaaggcatatcatctacagggatgcaatgtaat 314
            ||| | ||||| ||| | ||||||||||| ||||||||||| ||||||||||| | ||| 
Sbjct: 941  agaacaatcctctatcaagaatatgtgaagggcatatcatcgacagggatgcagtctaac 1000

                                                                        
Query: 315  tgcgggtttgaaggtcaaattaacgcatgctggactcacaaagtgacaactaaagaacta 374
            || ||||||||||||||| |||| |||||||||||||||||  |||||||||||||||||
Sbjct: 1001 tgtgggtttgaaggtcaagttaatgcatgctggactcacaatatgacaactaaagaacta 1060

                       
Query: 375  gatacaattcg 385
            |||||||||||
Sbjct: 1061 gatacaattcg 1071
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>dbj|AK060785.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-033-D03, full
           insert sequence
          Length = 1090

 Score =  264 bits (133), Expect = 2e-67
 Identities = 241/277 (87%)
 Strand = Plus / Plus

                                                                       
Query: 109 agtgtttccccaaggtagatggacagatgctctccctcgcgttccggttcttaagggcca 168
           |||| ||||| ||| ||||||| ||||||||||| || || ||||| ||||||||||| |
Sbjct: 25  agtgcttcccgaagttagatgggcagatgctctcgcttgcattccgtttcttaagggcaa 84

                                                                       
Query: 169 gaactccagagcaaagagctctagtcgatttggaaacccactatacgaaggagtaccttg 228
           ||||||||||  |||||||||| || |||||||||||||| ||||| ||||| || ||||
Sbjct: 85  gaactccagaagaaagagctctggtagatttggaaacccattatacaaaggaatatcttg 144

                                                                       
Query: 229 atgaggaagttgaatcctgcacaaggagagcgatcctgtataaggaatatgtgaaaggca 288
           ||||| |||||| ||| ||||| |||||| | ||||| ||| | ||||||||||| ||||
Sbjct: 145 atgagaaagttggatcatgcacgaggagaacaatcctctatcaagaatatgtgaagggca 204

                                                                       
Query: 289 tatcatctacagggatgcaatgtaattgcgggtttgaaggtcaaattaacgcatgctgga 348
           ||||||| ||||||||||| | ||| || ||||||||||||||| |||| ||||||||||
Sbjct: 205 tatcatcgacagggatgcagtctaactgtgggtttgaaggtcaagttaatgcatgctgga 264

                                                
Query: 349 ctcacaaagtgacaactaaagaactagatacaattcg 385
           |||||||  ||||||||||||||||||||||||||||
Sbjct: 265 ctcacaatatgacaactaaagaactagatacaattcg 301
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>gb|AC104713.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1362_G11,
             complete sequence
          Length = 115808

 Score =  149 bits (75), Expect = 8e-33
 Identities = 105/115 (91%)
 Strand = Plus / Minus

                                                                         
Query: 271   aggaatatgtgaaaggcatatcatctacagggatgcaatgtaattgcgggtttgaaggtc 330
             ||||||||||||| ||||||||||| ||||||||||| | ||| || |||||||||||||
Sbjct: 89331 aggaatatgtgaagggcatatcatcgacagggatgcagtctaactgtgggtttgaaggtc 89272

                                                                    
Query: 331   aaattaacgcatgctggactcacaaagtgacaactaaagaactagatacaattcg 385
             || |||| |||||||||||||||||  ||||||||||||||||||||||||||||
Sbjct: 89271 aagttaatgcatgctggactcacaatatgacaactaaagaactagatacaattcg 89217



 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 84/96 (87%)
 Strand = Plus / Minus

                                                                         
Query: 124   tagatggacagatgctctccctcgcgttccggttcttaagggccagaactccagagcaaa 183
             ||||||| ||||||||||| || || ||||| ||||||||||| |||||||||||  |||
Sbjct: 90027 tagatgggcagatgctctcgcttgcattccgtttcttaagggcaagaactccagaagaaa 89968

                                                 
Query: 184   gagctctagtcgatttggaaacccactatacgaagg 219
             ||||||| || |||||||||||||| ||||| ||||
Sbjct: 89967 gagctctggtagatttggaaacccattatacaaagg 89932
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  149 bits (75), Expect = 8e-33
 Identities = 105/115 (91%)
 Strand = Plus / Minus

                                                                            
Query: 271      aggaatatgtgaaaggcatatcatctacagggatgcaatgtaattgcgggtttgaaggtc 330
                ||||||||||||| ||||||||||| ||||||||||| | ||| || |||||||||||||
Sbjct: 26708334 aggaatatgtgaagggcatatcatcgacagggatgcagtctaactgtgggtttgaaggtc 26708275

                                                                       
Query: 331      aaattaacgcatgctggactcacaaagtgacaactaaagaactagatacaattcg 385
                || |||| |||||||||||||||||  ||||||||||||||||||||||||||||
Sbjct: 26708274 aagttaatgcatgctggactcacaatatgacaactaaagaactagatacaattcg 26708220



 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 84/96 (87%)
 Strand = Plus / Minus

                                                                            
Query: 124      tagatggacagatgctctccctcgcgttccggttcttaagggccagaactccagagcaaa 183
                ||||||| ||||||||||| || || ||||| ||||||||||| |||||||||||  |||
Sbjct: 26709030 tagatgggcagatgctctcgcttgcattccgtttcttaagggcaagaactccagaagaaa 26708971

                                                    
Query: 184      gagctctagtcgatttggaaacccactatacgaagg 219
                ||||||| || |||||||||||||| ||||| ||||
Sbjct: 26708970 gagctctggtagatttggaaacccattatacaaagg 26708935
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>ref|XM_522861.1| PREDICTED: Pan troglodytes chromosome 14 open reading frame 101
            (LOC467464), mRNA
          Length = 2196

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 64   ggctgtcctcgctggcattg 83
            ||||||||||||||||||||
Sbjct: 1164 ggctgtcctcgctggcattg 1183
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>ref|NM_001035101.1| Bos taurus thioredoxin-like (TXNL2), mRNA
          Length = 1211

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 364 ctaaagaactagatacaatt 383
           ||||||||||||||||||||
Sbjct: 666 ctaaagaactagatacaatt 685
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>gb|BT021690.1| Bos taurus thioredoxin-like 2 (TXNL2), mRNA, complete cds
          Length = 1211

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 364 ctaaagaactagatacaatt 383
           ||||||||||||||||||||
Sbjct: 666 ctaaagaactagatacaatt 685
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>emb|CT025272.2| Xenopus tropicalis finished cDNA, clone TEgg137j20
          Length = 2348

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 270 aaggaatatgtgaaaggcat 289
           ||||||||||||||||||||
Sbjct: 290 aaggaatatgtgaaaggcat 309
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>ref|XM_810332.1| Trypanosoma cruzi strain CL Brener hypothetical protein
           (Tc00.1047053511577.80) partial mRNA
          Length = 705

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 139 tctccctcgcgttccggttc 158
           ||||||||||||||||||||
Sbjct: 315 tctccctcgcgttccggttc 334
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>gb|AC108945.4| Mus musculus BAC clone RP23-119J11 from 15, complete sequence
          Length = 200294

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 340   catgctggactcacaaagtg 359
             ||||||||||||||||||||
Sbjct: 33686 catgctggactcacaaagtg 33705
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>gb|AC110374.3| Mus musculus BAC clone RP23-293P18 from 15, complete sequence
          Length = 199869

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 340   catgctggactcacaaagtg 359
             ||||||||||||||||||||
Sbjct: 28656 catgctggactcacaaagtg 28637
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>ref|NM_001004870.1| Xenopus tropicalis MGC79624 protein (MGC79624), mRNA
          Length = 4077

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 270 aaggaatatgtgaaaggcat 289
           ||||||||||||||||||||
Sbjct: 314 aaggaatatgtgaaaggcat 333
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>gb|AC020595.7| Homo sapiens BAC clone RP11-358M9 from 2, complete sequence
          Length = 189219

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 223   accttgatgaggaagttgaa 242
             ||||||||||||||||||||
Sbjct: 28163 accttgatgaggaagttgaa 28182
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>emb|BX000428.10| Mouse DNA sequence from clone RP23-474G7 on chromosome X, complete
             sequence
          Length = 162246

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 350   tcacaaagtgacaactaaag 369
             ||||||||||||||||||||
Sbjct: 97358 tcacaaagtgacaactaaag 97339
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>ref|XM_552209.1| Anopheles gambiae str. PEST ENSANGP00000029550
           (ENSANGG00000024416), partial mRNA
          Length = 333

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 170 aactccagagcaaagagctc 189
           ||||||||||||||||||||
Sbjct: 280 aactccagagcaaagagctc 261
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>gb|BC075104.1| Xenopus tropicalis MGC79624 protein, mRNA (cDNA clone MGC:79624
           IMAGE:6979823), complete cds
          Length = 4077

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 270 aaggaatatgtgaaaggcat 289
           ||||||||||||||||||||
Sbjct: 314 aaggaatatgtgaaaggcat 333
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>gb|AY609618.1| Sus scrofa clone Clu_21370.scr.msk.p1.Contig5, mRNA sequence
          Length = 1224

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 364 ctaaagaactagatacaatt 383
           ||||||||||||||||||||
Sbjct: 668 ctaaagaactagatacaatt 687


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,756,486
Number of Sequences: 3902068
Number of extensions: 2756486
Number of successful extensions: 49354
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 49312
Number of HSP's gapped (non-prelim): 42
length of query: 388
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 366
effective length of database: 17,147,199,772
effective search space: 6275875116552
effective search space used: 6275875116552
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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