>T3RE_SALTY (P40815) Type III restriction-modification system StyLTI enzyme res|
           (EC 3.1.21.5)
          Length = 990

 Score = 31.6 bits (70), Expect = 0.48
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +3

Query: 123 GSGLRLGLDENPDAIISGEWPENFS-LLSYDD 215
           G GLRL +DEN   +   EWP   S L+ YD+
Sbjct: 534 GRGLRLPVDENGHRVHQEEWPSRLSFLIGYDE 565

>T3RE_BACC1 (P25241) Type III restriction-modification system Bce10987IP enzyme|
           res (EC 3.1.21.5)
          Length = 987

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +3

Query: 123 GSGLRLGLDENPDAIISGEWPENFS-LLSYDD 215
           G GLRL +DE    I   EWP   + L+ YD+
Sbjct: 536 GRGLRLPVDETGHRIQQDEWPTRLAFLIGYDE 567

>MCM4_SCHPO (P29458) DNA replication licensing factor mcm4 (Minichromosome|
           maintenance protein 4) (Cell division control protein
           21)
          Length = 931

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 144 LDENPDAIISGEWPENFSLLSYDDL 218
           L E PD +  G+ P + SL  YD+L
Sbjct: 376 LQETPDVVPDGQTPHSVSLCVYDEL 400

>YACK_RHIME (Q9X447) Hypothetical 80.6 kDa protein in ackA 5'region (ORFA)|
          Length = 733

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 150 ENPDAIISGEWPENFSLLSYDDLRAY 227
           ENPD ++SGEW       + DD+RA+
Sbjct: 413 ENPD-LVSGEWIMRCEARTLDDIRAF 437

>Y1355_MYCTU (Q11025) Hypothetical protein Rv1355c/MT1398|
          Length = 715

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = +3

Query: 309 AMSTPVLMATADQALVEVE 365
           A   PVLMAT+D+ LV+VE
Sbjct: 218 ARGVPVLMATSDRGLVDVE 236


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,524,288
Number of Sequences: 219361
Number of extensions: 304148
Number of successful extensions: 744
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 744
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 1380984984
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)