ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal13j21 |
|---|---|
| Clone Library Name | barley_pub |
>RNS1_ARATH (P42813) Ribonuclease 1 precursor (EC 3.1.27.1)| Length = 230 Score = 48.5 bits (114), Expect = 4e-06 Identities = 20/46 (43%), Positives = 26/46 (56%) Frame = -1 Query: 364 QCKDGPFGKKQLYQIYLCVDKDGKTFIDCPKLPKLRCPEEVLFHPF 227 +C G QLYQ+YLCVD+ G I+CP P +C E+ F F Sbjct: 185 ECNRDGSGNSQLYQVYLCVDRSGSGLIECPVFPHGKCGAEIEFPSF 230
>RNS3_ARATH (P42815) Ribonuclease 3 precursor (EC 3.1.27.1)| Length = 222 Score = 47.0 bits (110), Expect = 1e-05 Identities = 21/46 (45%), Positives = 24/46 (52%) Frame = -1 Query: 364 QCKDGPFGKKQLYQIYLCVDKDGKTFIDCPKLPKLRCPEEVLFHPF 227 +C QLYQIYLCVD FI+CP +P RC V F F Sbjct: 177 ECNKDSSHNSQLYQIYLCVDTSASKFINCPVMPHGRCDSRVQFPKF 222
>RNLE_LYCES (P80022) Extracellular ribonuclease LE precursor (EC 3.1.27.1)| (RNase LE) Length = 230 Score = 45.8 bits (107), Expect = 3e-05 Identities = 19/46 (41%), Positives = 25/46 (54%) Frame = -1 Query: 364 QCKDGPFGKKQLYQIYLCVDKDGKTFIDCPKLPKLRCPEEVLFHPF 227 QC G QLYQ+Y+CVD G + I+CP P +C + F F Sbjct: 185 QCNVDQSGNSQLYQVYICVDGSGSSLIECPIFPGGKCGTSIEFPTF 230
>RNLX_LYCES (P80196) Intracellular ribonuclease LX precursor (EC 3.1.27.1)| (RNase LX) Length = 237 Score = 44.3 bits (103), Expect = 7e-05 Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 1/49 (2%) Frame = -1 Query: 364 QCKDGPFGKKQLYQIYLCVDKDGKTFIDCPKLPK-LRCPEEVLFHPFHT 221 +C G QLYQ+YLCVD FIDCP P +C ++ F F T Sbjct: 182 ECNVDSQGNHQLYQVYLCVDSSASKFIDCPIFPHGGKCGSKIEFPSFST 230
>RNS1_PYRPY (O80322) Ribonuclease S-1 precursor (EC 3.1.27.1) (S1-RNase)| Length = 228 Score = 32.0 bits (71), Expect = 0.38 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 4/47 (8%) Frame = -1 Query: 364 QCKDGPFGKKQLYQIYLCVDKDGKTFIDCPKLP----KLRCPEEVLF 236 +C+ +L ++ LC D+D K FI+CP P + CP V + Sbjct: 182 KCQKNTRTTTELVEVTLCSDRDLKKFINCPHGPPQGSRFSCPSSVQY 228
>RNDI_DICDI (Q7M438) Ribonuclease DdI precursor (EC 3.1.27.1) (RNase DdI)| Length = 223 Score = 31.2 bits (69), Expect = 0.65 Identities = 15/43 (34%), Positives = 21/43 (48%) Frame = -1 Query: 364 QCKDGPFGKKQLYQIYLCVDKDGKTFIDCPKLPKLRCPEEVLF 236 QC G QL + +C+DK+ + +DCP L C V F Sbjct: 182 QCSSG-----QLSTVAVCIDKNSLSIMDCPDLQGWSCSGSVKF 219
>RNS5_PYRPY (P93460) Ribonuclease S-5 precursor (EC 3.1.27.1) (S5-RNase)| Length = 227 Score = 30.8 bits (68), Expect = 0.85 Identities = 12/20 (60%), Positives = 15/20 (75%) Frame = -1 Query: 334 QLYQIYLCVDKDGKTFIDCP 275 +L +I LC DK G+ FIDCP Sbjct: 190 ELVEITLCSDKSGEHFIDCP 209
>ESSC_STAAW (Q8NYF3) Protein essC| Length = 1479 Score = 30.8 bits (68), Expect = 0.85 Identities = 16/31 (51%), Positives = 18/31 (58%) Frame = -1 Query: 355 DGPFGKKQLYQIYLCVDKDGKTFIDCPKLPK 263 DGPF K LY I D KTFIDC +P+ Sbjct: 1367 DGPFEKDSLYII-----NDFKTFIDCTYIPE 1392
>ESSC_STAAS (Q6GCI5) Protein essC| Length = 1479 Score = 30.8 bits (68), Expect = 0.85 Identities = 16/31 (51%), Positives = 18/31 (58%) Frame = -1 Query: 355 DGPFGKKQLYQIYLCVDKDGKTFIDCPKLPK 263 DGPF K LY I D KTFIDC +P+ Sbjct: 1367 DGPFEKDSLYII-----NDFKTFIDCTYIPE 1392
>ESSC_STAAC (Q5HJ86) Protein essC| Length = 1479 Score = 30.8 bits (68), Expect = 0.85 Identities = 16/31 (51%), Positives = 18/31 (58%) Frame = -1 Query: 355 DGPFGKKQLYQIYLCVDKDGKTFIDCPKLPK 263 DGPF K LY I D KTFIDC +P+ Sbjct: 1367 DGPFEKDSLYII-----NDFKTFIDCTYIPE 1392
>RNS3_PYRPY (O80323) Ribonuclease S-3 precursor (EC 3.1.27.1) (S3-RNase)| Length = 222 Score = 30.8 bits (68), Expect = 0.85 Identities = 12/20 (60%), Positives = 15/20 (75%) Frame = -1 Query: 334 QLYQIYLCVDKDGKTFIDCP 275 +L +I LC DK G+ FIDCP Sbjct: 185 ELVEITLCSDKSGEHFIDCP 204
>YMT6_YEAST (Q04215) Transposon Ty1 protein A| Length = 440 Score = 30.4 bits (67), Expect = 1.1 Identities = 13/27 (48%), Positives = 17/27 (62%) Frame = -3 Query: 287 HRLPQAAQVALPRGGPLPSLPHLDAQR 207 H PQAAQV LP+ GP P ++ Q+ Sbjct: 69 HASPQAAQVPLPQNGPYPQQRMMNTQQ 95
>P3F2B_XENLA (P70030) POU domain, class 3, transcription factor 2-B| (Transcription factor POU3-B) (XLPOU3B) Length = 385 Score = 30.4 bits (67), Expect = 1.1 Identities = 22/74 (29%), Positives = 33/74 (44%) Frame = -3 Query: 302 GRQDLHRLPQAAQVALPRGGPLPSLPHLDAQRHIVRQDHLAHRGLRATRSAGASTETTCY 123 G+QD+ Q+++ L G +L H H+V H H G A RS G++ ++ Sbjct: 76 GQQDIKPTVQSSRDELHGSG---TLQHQSRAPHLVHPAHGNHHGPGAWRSTGSTHLSSMA 132 Query: 122 CGLNSGPLYCAMSF 81 G LY SF Sbjct: 133 SSNGQGLLYSQPSF 146
>P3F2A_XENLA (P31365) POU domain, class 3, transcription factor 2-A| (Transcription factor POU3-A) (XLPOU3) Length = 382 Score = 30.0 bits (66), Expect = 1.4 Identities = 22/74 (29%), Positives = 33/74 (44%) Frame = -3 Query: 302 GRQDLHRLPQAAQVALPRGGPLPSLPHLDAQRHIVRQDHLAHRGLRATRSAGASTETTCY 123 G+QD+ Q+++ L G +L H H+V H H G A RS G++ ++ Sbjct: 76 GQQDIKPTVQSSRDELHVSG---TLQHQSRAPHLVHPAHGNHHGPGAWRSTGSTHLSSMA 132 Query: 122 CGLNSGPLYCAMSF 81 G LY SF Sbjct: 133 SSNGQGLLYSQPSF 146
>VPS36_YEAST (Q06696) Vacuolar protein sorting protein 36| Length = 566 Score = 29.6 bits (65), Expect = 1.9 Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 2/53 (3%) Frame = -3 Query: 287 HRLPQAAQVA--LPRGGPLPSLPHLDAQRHIVRQDHLAHRGLRATRSAGASTE 135 HRLP A++V L R S H++ +++ + ++ +H L ++ S G+STE Sbjct: 202 HRLPNASKVRSKLNRLNFHDSRVHIELEKNSLARNKSSHSALSSSSSTGSSTE 254
>ESSC_STAAU (P0C048) Protein essC| Length = 1479 Score = 29.6 bits (65), Expect = 1.9 Identities = 15/31 (48%), Positives = 18/31 (58%) Frame = -1 Query: 355 DGPFGKKQLYQIYLCVDKDGKTFIDCPKLPK 263 DGPF K LY I D KT+IDC +P+ Sbjct: 1367 DGPFEKDSLYII-----NDFKTYIDCTYIPE 1392
>ESSC_STAAN (Q99WT9) Protein essC| Length = 1479 Score = 29.6 bits (65), Expect = 1.9 Identities = 15/31 (48%), Positives = 18/31 (58%) Frame = -1 Query: 355 DGPFGKKQLYQIYLCVDKDGKTFIDCPKLPK 263 DGPF K LY I D KT+IDC +P+ Sbjct: 1367 DGPFEKDSLYII-----NDFKTYIDCTYIPE 1392
>ESSC_STAAM (Q932J9) Protein essC| Length = 1479 Score = 29.6 bits (65), Expect = 1.9 Identities = 15/31 (48%), Positives = 18/31 (58%) Frame = -1 Query: 355 DGPFGKKQLYQIYLCVDKDGKTFIDCPKLPK 263 DGPF K LY I D KT+IDC +P+ Sbjct: 1367 DGPFEKDSLYII-----NDFKTYIDCTYIPE 1392
>CWC22_USTMA (Q4PCY0) Pre-mRNA-splicing factor CWC22| Length = 886 Score = 29.3 bits (64), Expect = 2.5 Identities = 14/25 (56%), Positives = 15/25 (60%) Frame = -1 Query: 202 SSAKITLPTEA*EPPARPVPQLKLP 128 SS +TLPT A P RP P L LP Sbjct: 679 SSKLLTLPTRARHAPTRPGPDLTLP 703
>CH601_CORDI (Q6NJ37) 60 kDa chaperonin 1 (Protein Cpn60 1) (groEL protein 1)| Length = 539 Score = 28.5 bits (62), Expect = 4.2 Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 2/31 (6%) Frame = -1 Query: 226 HTWMLNATSSAKITLPTEA--*EPPARPVPQ 140 H+ ++NATS A++ L TEA E PA P P+ Sbjct: 500 HSAVVNATSVARMVLTTEASVVEKPAAPAPE 530
>R3HD1_HUMAN (Q15032) R3H domain-containing protein 1| Length = 1099 Score = 28.5 bits (62), Expect = 4.2 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 4/50 (8%) Frame = -3 Query: 278 PQAAQVALPRGGPLPSLPHLDAQRHIVRQDHL----AHRGLRATRSAGAS 141 P +QV P PLP+ P A HI QD+L +H L SA S Sbjct: 513 PVRSQVPGPPQPPLPAPPQQPAANHIFSQDNLGSQFSHMSLARQPSADGS 562
>DPOLA_RAT (O89042) DNA polymerase alpha catalytic subunit (EC 2.7.7.7)| (Fragment) Length = 1451 Score = 28.1 bits (61), Expect = 5.5 Identities = 15/43 (34%), Positives = 18/43 (41%) Frame = -1 Query: 271 LPKLRCPEEVLFHPFHTWMLNATSSAKITLPTEA*EPPARPVP 143 +PK + +PF A S KI P EPP PVP Sbjct: 186 IPKKKRSTGASPNPFSVHTATAVPSGKIASPVSRKEPPLTPVP 228
>DPOLA_HUMAN (P09884) DNA polymerase alpha catalytic subunit (EC 2.7.7.7)| Length = 1462 Score = 27.7 bits (60), Expect = 7.2 Identities = 13/31 (41%), Positives = 14/31 (45%) Frame = -1 Query: 235 HPFHTWMLNATSSAKITLPTEA*EPPARPVP 143 +PF A S KI P EPP PVP Sbjct: 192 NPFSVHTATAVPSGKIASPVSRKEPPLTPVP 222 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 45,793,416 Number of Sequences: 219361 Number of extensions: 835119 Number of successful extensions: 2386 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 2336 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2386 length of database: 80,573,946 effective HSP length: 96 effective length of database: 59,515,290 effective search space used: 1428366960 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
