ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal13j20
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CI040_MOUSE (Q8VCE4) Protein C9orf40 homolog 30 1.8

>CI040_MOUSE (Q8VCE4) Protein C9orf40 homolog|
          Length = 163

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +1

Query: 10  PAGRCAPASVLREAGRARQRRCGDGDDRIEQAGGEQDRVVPRPEDAE 150
           P  R   A ++ E   A ++R G GDDR E  G  ++   P P + E
Sbjct: 40  PLKRQGDAGIMAEPASAPRKRRGGGDDRQELQGCSREPGEPPPGEQE 86


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.312    0.133    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,777,943
Number of Sequences: 219361
Number of extensions: 468565
Number of successful extensions: 815
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 815
length of database: 80,573,946
effective HSP length: 111
effective length of database: 56,224,875
effective search space used: 1349397000
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
to top