ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal13j20
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_196426.1| Oryza sativa (japonica cultivar-group) hypothet... 70 6e-09
2gb|AC021893.18|AC021893 Genomic Sequence for Oryza sativa, Nippo... 70 6e-09
3dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 70 6e-09
4gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 70 6e-09
5ref|XM_754472.1| Ustilago maydis 521 hypothetical protein (UM034... 46 0.089
6gb|AC025674.10| Homo sapiens chromosome 8, clone RP11-513O17, co... 46 0.089
7gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome 44 0.35
8dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
9dbj|AP004005.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
10dbj|AP005521.4| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
11ref|NM_187995.1| Oryza sativa (japonica cultivar-group), Ozsa841... 40 5.5
12gb|AC104616.5| Oryza sativa (japonica cultivar-group) chromosome... 40 5.5
13gb|AC105932.6| Oryza sativa (japonica cultivar-group) chromosome... 40 5.5
14gb|AY632767.1| Mycobacterium avium probable short-chain dehydrog... 40 5.5
15gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome 40 5.5
16gb|AC149221.2| Mus musculus BAC clone RP23-402P22 from chromosom... 40 5.5
17gb|BC072436.1| Homo sapiens hypoxia up-regulated 1, mRNA (cDNA c... 40 5.5
18ref|XM_753508.1| Ustilago maydis 521 hypothetical protein (UM024... 40 5.5
19emb|CR931997.1| Corynebacterium jeikeium K411 complete genome 40 5.5
20gb|AC140248.3| Mus musculus BAC clone RP24-285L8 from chromosome... 40 5.5
21gb|BC017726.1| Homo sapiens hypoxia up-regulated 1, mRNA (cDNA c... 40 5.5
22gb|BC004560.2| Homo sapiens hypoxia up-regulated 1, mRNA (cDNA c... 40 5.5
23ref|NM_006389.2| Homo sapiens hypoxia up-regulated 1 (HYOU1), mRNA 40 5.5
24gb|AC004941.2| Homo sapiens PAC clone RP5-979P20 from 7, complet... 40 5.5
25emb|BX842574.1| Mycobacterium tuberculosis H37Rv complete genome... 40 5.5
26emb|BX640427.1| Bordetella parapertussis strain 12822, complete ... 40 5.5
27emb|BX248337.1| Mycobacterium bovis subsp. bovis AF2122/97 compl... 40 5.5
28emb|AL663020.4|OSJN00220 Oryza sativa genomic DNA, chromosome 4,... 40 5.5
29emb|AL606995.3|OSJN00131 Oryza sativa genomic DNA, chromosome 4,... 40 5.5
30emb|CR860402.1| Pongo pygmaeus mRNA; cDNA DKFZp459F231 (from clo... 40 5.5
31emb|CR860039.1| Pongo pygmaeus mRNA; cDNA DKFZp459B0316 (from cl... 40 5.5
32gb|AC148926.4| Pan troglodytes BAC clone RP43-136P16 from chromo... 40 5.5
33dbj|AB212624.1| Streptomyces sp. KO-3988 furaquinocin A biosynth... 40 5.5
34dbj|AK127324.1| Homo sapiens cDNA FLJ45395 fis, clone BRHIP30271... 40 5.5
35gb|DQ372932.1| Homo sapiens 150 kDa oxygen-regulated protein var... 40 5.5
36dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
37dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
38dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
39dbj|AK222756.1| Homo sapiens mRNA for oxygen regulated protein p... 40 5.5
40gb|DQ350134.1| Homo sapiens 150 kDa oxygen-regulated protein mRN... 40 5.5
41gb|AC145857.3| Pan troglodytes BAC clone RP43-6D4 from chromosom... 40 5.5
42ref|XM_238565.3| PREDICTED: Rattus norvegicus hypothetical LOC30... 40 5.5
43gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 5.5
44dbj|AP001383.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
45dbj|AP001080.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
46dbj|AP005884.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
47dbj|AP005789.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
48gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 40 5.5
49gb|U65785.1|HSU65785 Human 150 kDa oxygen-regulated protein ORP1... 40 5.5
50emb|AL662983.3|OSJN00181 Oryza sativa genomic DNA, chromosome 4,... 40 5.5
51dbj|AP003392.2| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 5.5 
>ref|NM_196426.1| Oryza sativa (japonica cultivar-group) hypothetical protein
           (OSJNBa0060A14.16), mRNA
          Length = 1218

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 57/65 (87%)
 Strand = Plus / Plus

                                                                       
Query: 342 ggcgacgacgatgacgacnatggcgggagcgactcgagctcggacctgtttgagatnaag 401
           ||||||||||| |||||| | | ||||||||| |||||||| |||||||| ||||| |||
Sbjct: 814 ggcgacgacgacgacgacgacgtcgggagcgagtcgagctccgacctgttcgagatcaag 873

                
Query: 402 agcct 406
           |||||
Sbjct: 874 agcct 878



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                              
Query: 108 cggcgagcaggatcgagtggtaccgagacctgagg 142
           ||||||| ||||||||||||||| |||||||||||
Sbjct: 575 cggcgagtaggatcgagtggtacagagacctgagg 609



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 193 cgctggcctcccgccaaatttgaat 217
           |||||| ||||||||||||||||||
Sbjct: 654 cgctggtctcccgccaaatttgaat 678
to top
>gb|AC021893.18|AC021893 Genomic Sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBa0060A14, from chromosome 10, complete sequence
          Length = 151343

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 57/65 (87%)
 Strand = Plus / Plus

                                                                          
Query: 342    ggcgacgacgatgacgacnatggcgggagcgactcgagctcggacctgtttgagatnaag 401
              ||||||||||| |||||| | | ||||||||| |||||||| |||||||| ||||| |||
Sbjct: 106268 ggcgacgacgacgacgacgacgtcgggagcgagtcgagctccgacctgttcgagatcaag 106327

                   
Query: 402    agcct 406
              |||||
Sbjct: 106328 agcct 106332



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                                 
Query: 108    cggcgagcaggatcgagtggtaccgagacctgagg 142
              ||||||| ||||||||||||||| |||||||||||
Sbjct: 106029 cggcgagtaggatcgagtggtacagagacctgagg 106063



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 193    cgctggcctcccgccaaatttgaat 217
              |||||| ||||||||||||||||||
Sbjct: 106108 cgctggtctcccgccaaatttgaat 106132
to top
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 57/65 (87%)
 Strand = Plus / Plus

                                                                            
Query: 342      ggcgacgacgatgacgacnatggcgggagcgactcgagctcggacctgtttgagatnaag 401
                ||||||||||| |||||| | | ||||||||| |||||||| |||||||| ||||| |||
Sbjct: 13413891 ggcgacgacgacgacgacgacgtcgggagcgagtcgagctccgacctgttcgagatcaag 13413950

                     
Query: 402      agcct 406
                |||||
Sbjct: 13413951 agcct 13413955



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                                   
Query: 108      cggcgagcaggatcgagtggtaccgagacctgagg 142
                ||||||| ||||||||||||||| |||||||||||
Sbjct: 13413652 cggcgagtaggatcgagtggtacagagacctgagg 13413686



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 193      cgctggcctcccgccaaatttgaat 217
                |||||| ||||||||||||||||||
Sbjct: 13413731 cgctggtctcccgccaaatttgaat 13413755



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                      
Query: 343     gcgacgacgatgacgacnatggc 365
               ||||||||||||||||| |||||
Sbjct: 5843264 gcgacgacgatgacgacgatggc 5843286
to top
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 57/65 (87%)
 Strand = Plus / Plus

                                                                            
Query: 342      ggcgacgacgatgacgacnatggcgggagcgactcgagctcggacctgtttgagatnaag 401
                ||||||||||| |||||| | | ||||||||| |||||||| |||||||| ||||| |||
Sbjct: 13421231 ggcgacgacgacgacgacgacgtcgggagcgagtcgagctccgacctgttcgagatcaag 13421290

                     
Query: 402      agcct 406
                |||||
Sbjct: 13421291 agcct 13421295



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                                   
Query: 108      cggcgagcaggatcgagtggtaccgagacctgagg 142
                ||||||| ||||||||||||||| |||||||||||
Sbjct: 13420992 cggcgagtaggatcgagtggtacagagacctgagg 13421026



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 193      cgctggcctcccgccaaatttgaat 217
                |||||| ||||||||||||||||||
Sbjct: 13421071 cgctggtctcccgccaaatttgaat 13421095



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                      
Query: 343     gcgacgacgatgacgacnatggc 365
               ||||||||||||||||| |||||
Sbjct: 5844013 gcgacgacgatgacgacgatggc 5844035
to top
>ref|XM_754472.1| Ustilago maydis 521 hypothetical protein (UM03418.1) partial mRNA
          Length = 4074

 Score = 46.1 bits (23), Expect = 0.089
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 338  aggtggcgacgacgatgacgacnatg 363
            |||||||||||||||||||||| |||
Sbjct: 1872 aggtggcgacgacgatgacgacgatg 1897
to top
>gb|AC025674.10| Homo sapiens chromosome 8, clone RP11-513O17, complete sequence
          Length = 152451

 Score = 46.1 bits (23), Expect = 0.089
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 282    gcttcaggaaaggaagctttact 304
              |||||||||||||||||||||||
Sbjct: 146365 gcttcaggaaaggaagctttact 146343
to top
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome
          Length = 3345170

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 10      cctgcaggtcggtgcgctcctgcgtc 35
               ||||||||||||||||| ||||||||
Sbjct: 2779504 cctgcaggtcggtgcgcacctgcgtc 2779529
to top
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                             
Query: 331      gcggtggaggtggcgacgacgatgacgac 359
                ||||||| |||||||||||||| ||||||
Sbjct: 20088809 gcggtggcggtggcgacgacgacgacgac 20088781
to top
>dbj|AP004005.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1188_F05
          Length = 117045

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 331   gcggtggaggtggcgacgacgatgacgac 359
             ||||||| |||||||||||||| ||||||
Sbjct: 35355 gcggtggcggtggcgacgacgacgacgac 35327
to top
>dbj|AP005521.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0477F03
          Length = 176120

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 331    gcggtggaggtggcgacgacgatgacgac 359
              ||||||| |||||||||||||| ||||||
Sbjct: 160660 gcggtggcggtggcgacgacgacgacgac 160632
to top
>ref|NM_187995.1| Oryza sativa (japonica cultivar-group), Ozsa8415 predicted mRNA
          Length = 1578

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 368  gagcgactcgagctcggacctgtt 391
            ||||||| ||||||||||||||||
Sbjct: 1020 gagcgacgcgagctcggacctgtt 1043
to top
>gb|AC104616.5| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNBa0079H13 map E60284SA, complete sequence
          Length = 116863

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 343   gcgacgacgatgacgacnatggc 365
             ||||||||||||||||| |||||
Sbjct: 70923 gcgacgacgatgacgacgatggc 70945
to top
>gb|AC105932.6| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNBb0038H12 map E60284SA, complete sequence
          Length = 139190

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 343   gcgacgacgatgacgacnatggc 365
             ||||||||||||||||| |||||
Sbjct: 80601 gcgacgacgatgacgacgatggc 80579
to top
>gb|AY632767.1| Mycobacterium avium probable short-chain dehydrogenase (MA0148)
           gene, complete cds
          Length = 864

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 333 ggtggaggtggcgacgacga 352
           ||||||||||||||||||||
Sbjct: 456 ggtggaggtggcgacgacga 437
to top
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome
          Length = 4403837

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 177     gcgaccgtggcgtggtcgctggcc 200
               ||||||||||||||||||| ||||
Sbjct: 1024098 gcgaccgtggcgtggtcgccggcc 1024075
to top
>gb|AC149221.2| Mus musculus BAC clone RP23-402P22 from chromosome 7, complete sequence
          Length = 202580

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 291   aaggaagctttactcttcag 310
             ||||||||||||||||||||
Sbjct: 79970 aaggaagctttactcttcag 79951
to top
>gb|BC072436.1| Homo sapiens hypoxia up-regulated 1, mRNA (cDNA clone MGC:90262
           IMAGE:5756154), complete cds
          Length = 3096

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 36  cgtgctccgggaagcgggcc 55
           ||||||||||||||||||||
Sbjct: 470 cgtgctccgggaagcgggcc 451
to top
>ref|XM_753508.1| Ustilago maydis 521 hypothetical protein (UM02454.1) partial mRNA
          Length = 6663

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 339 ggtggcgacgacgatgacga 358
           ||||||||||||||||||||
Sbjct: 178 ggtggcgacgacgatgacga 197
to top
>emb|CR931997.1| Corynebacterium jeikeium K411 complete genome
          Length = 2462499

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 335     tggaggtggcgacgacgatg 354
               ||||||||||||||||||||
Sbjct: 2146311 tggaggtggcgacgacgatg 2146292
to top
>gb|AC140248.3| Mus musculus BAC clone RP24-285L8 from chromosome 7, complete sequence
          Length = 182854

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 291   aaggaagctttactcttcag 310
             ||||||||||||||||||||
Sbjct: 14091 aaggaagctttactcttcag 14072
to top
>gb|BC017726.1| Homo sapiens hypoxia up-regulated 1, mRNA (cDNA clone
           IMAGE:3898847), containing frame-shift errors
          Length = 2025

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 36  cgtgctccgggaagcgggcc 55
           ||||||||||||||||||||
Sbjct: 422 cgtgctccgggaagcgggcc 403
to top
>gb|BC004560.2| Homo sapiens hypoxia up-regulated 1, mRNA (cDNA clone
           IMAGE:3959339), complete cds
          Length = 1602

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 36  cgtgctccgggaagcgggcc 55
           ||||||||||||||||||||
Sbjct: 419 cgtgctccgggaagcgggcc 400
to top
>ref|NM_006389.2| Homo sapiens hypoxia up-regulated 1 (HYOU1), mRNA
          Length = 4552

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 36  cgtgctccgggaagcgggcc 55
           ||||||||||||||||||||
Sbjct: 521 cgtgctccgggaagcgggcc 502
to top
>gb|AC004941.2| Homo sapiens PAC clone RP5-979P20 from 7, complete sequence
          Length = 122759

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 324   tcagcctgcggtggaggtgg 343
             ||||||||||||||||||||
Sbjct: 66281 tcagcctgcggtggaggtgg 66262
to top
>emb|BX842574.1| Mycobacterium tuberculosis H37Rv complete genome; segment 3/13
          Length = 349564

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 177    gcgaccgtggcgtggtcgctggcc 200
              ||||||||||||||||||| ||||
Sbjct: 339812 gcgaccgtggcgtggtcgccggcc 339789
to top
>emb|BX640427.1| Bordetella parapertussis strain 12822, complete genome; segment 5/14
          Length = 348997

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 96     cgagcaagctggcggcgagcagga 119
              |||||||| |||||||||||||||
Sbjct: 333843 cgagcaaggtggcggcgagcagga 333866
to top
>emb|BX248337.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment
             4/14
          Length = 327650

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 177   gcgaccgtggcgtggtcgctggcc 200
             ||||||||||||||||||| ||||
Sbjct: 37551 gcgaccgtggcgtggtcgccggcc 37528
to top
>emb|AL663020.4|OSJN00220 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0049H08,
             complete sequence
          Length = 186642

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 339   ggtggcgacgacgatgacga 358
             ||||||||||||||||||||
Sbjct: 21544 ggtggcgacgacgatgacga 21563
to top
>emb|AL606995.3|OSJN00131 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0085H11,
             complete sequence
          Length = 132394

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 340   gtggcgacgacgatgacgac 359
             ||||||||||||||||||||
Sbjct: 95308 gtggcgacgacgatgacgac 95327
to top
>emb|CR860402.1| Pongo pygmaeus mRNA; cDNA DKFZp459F231 (from clone DKFZp459F231)
          Length = 4357

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 36  cgtgctccgggaagcgggcc 55
           ||||||||||||||||||||
Sbjct: 515 cgtgctccgggaagcgggcc 496
to top
>emb|CR860039.1| Pongo pygmaeus mRNA; cDNA DKFZp459B0316 (from clone DKFZp459B0316)
          Length = 2030

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 36  cgtgctccgggaagcgggcc 55
           ||||||||||||||||||||
Sbjct: 423 cgtgctccgggaagcgggcc 404
to top
>gb|AC148926.4| Pan troglodytes BAC clone RP43-136P16 from chromosome 7, complete
             sequence
          Length = 178320

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 324   tcagcctgcggtggaggtgg 343
             ||||||||||||||||||||
Sbjct: 13971 tcagcctgcggtggaggtgg 13990
to top
>dbj|AB212624.1| Streptomyces sp. KO-3988 furaquinocin A biosynthetic gene cluster,
             complete cds
          Length = 27448

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 334   gtggaggtggcgacgacgat 353
             ||||||||||||||||||||
Sbjct: 16506 gtggaggtggcgacgacgat 16487
to top
>dbj|AK127324.1| Homo sapiens cDNA FLJ45395 fis, clone BRHIP3027191, highly  similar
           to 150 kDa oxygen-regulated protein precursor
          Length = 4510

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 36  cgtgctccgggaagcgggcc 55
           ||||||||||||||||||||
Sbjct: 473 cgtgctccgggaagcgggcc 454
to top
>gb|DQ372932.1| Homo sapiens 150 kDa oxygen-regulated protein variant 1 mRNA,
           complete cds
          Length = 3301

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 36  cgtgctccgggaagcgggcc 55
           ||||||||||||||||||||
Sbjct: 492 cgtgctccgggaagcgggcc 473
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 339      ggtggcgacgacgatgacga 358
                ||||||||||||||||||||
Sbjct: 17649170 ggtggcgacgacgatgacga 17649189



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 340      gtggcgacgacgatgacgac 359
                ||||||||||||||||||||
Sbjct: 16434742 gtggcgacgacgatgacgac 16434761
to top
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 333     ggtggaggtggcgacgacga 352
               ||||||||||||||||||||
Sbjct: 1290479 ggtggaggtggcgacgacga 1290460
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 368     gagcgactcgagctcggacctgtt 391
               ||||||| ||||||||||||||||
Sbjct: 8995334 gagcgacgcgagctcggacctgtt 8995357
to top
>dbj|AK222756.1| Homo sapiens mRNA for oxygen regulated protein precursor variant,
           clone: HEP00349
          Length = 3408

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 36  cgtgctccgggaagcgggcc 55
           ||||||||||||||||||||
Sbjct: 497 cgtgctccgggaagcgggcc 478
to top
>gb|DQ350134.1| Homo sapiens 150 kDa oxygen-regulated protein mRNA, complete cds
          Length = 3301

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 36  cgtgctccgggaagcgggcc 55
           ||||||||||||||||||||
Sbjct: 492 cgtgctccgggaagcgggcc 473
to top
>gb|AC145857.3| Pan troglodytes BAC clone RP43-6D4 from chromosome 7, complete sequence
          Length = 208516

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 324   tcagcctgcggtggaggtgg 343
             ||||||||||||||||||||
Sbjct: 92028 tcagcctgcggtggaggtgg 92047
to top
>ref|XM_238565.3| PREDICTED: Rattus norvegicus hypothetical LOC301075 (LOC301075),
           mRNA
          Length = 5107

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 132 gagacctgaggatgcagaaggctg 155
           ||||||| ||||||||||||||||
Sbjct: 460 gagaccttaggatgcagaaggctg 483
to top
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 188     gtggtcgctggcctcccgcc 207
               ||||||||||||||||||||
Sbjct: 2289970 gtggtcgctggcctcccgcc 2289951
to top
>dbj|AP001383.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
              clone:P0453A06
          Length = 154378

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 368    gagcgactcgagctcggacctgtt 391
              ||||||| ||||||||||||||||
Sbjct: 103089 gagcgacgcgagctcggacctgtt 103112
to top
>dbj|AP001080.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
             clone:P0499C11
          Length = 151369

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 368   gagcgactcgagctcggacctgtt 391
             ||||||| ||||||||||||||||
Sbjct: 24341 gagcgacgcgagctcggacctgtt 24364
to top
>dbj|AP005884.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0598D02
          Length = 155238

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 333   ggtggaggtggcgacgacga 352
             ||||||||||||||||||||
Sbjct: 61483 ggtggaggtggcgacgacga 61464
to top
>dbj|AP005789.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0563F09
          Length = 174905

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 333    ggtggaggtggcgacgacga 352
              ||||||||||||||||||||
Sbjct: 121353 ggtggaggtggcgacgacga 121334
to top
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 333     ggtggaggtggcgacgacga 352
               ||||||||||||||||||||
Sbjct: 3967580 ggtggaggtggcgacgacga 3967561
to top
>gb|U65785.1|HSU65785 Human 150 kDa oxygen-regulated protein ORP150 mRNA, complete cds
          Length = 4503

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 36  cgtgctccgggaagcgggcc 55
           ||||||||||||||||||||
Sbjct: 472 cgtgctccgggaagcgggcc 453
to top
>emb|AL662983.3|OSJN00181 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0081G05,
              complete sequence
          Length = 173950

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 339    ggtggcgacgacgatgacga 358
              ||||||||||||||||||||
Sbjct: 129909 ggtggcgacgacgatgacga 129928
to top
>dbj|AP003392.2| Homo sapiens genomic DNA, chromosome 11 clone:RP11-110I1, complete
              sequence
          Length = 178341

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 36     cgtgctccgggaagcgggcc 55
              ||||||||||||||||||||
Sbjct: 146301 cgtgctccgggaagcgggcc 146320


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,583,836
Number of Sequences: 3902068
Number of extensions: 2583836
Number of successful extensions: 87764
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 86835
Number of HSP's gapped (non-prelim): 929
length of query: 408
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 386
effective length of database: 17,147,199,772
effective search space: 6618819111992
effective search space used: 6618819111992
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top