ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal13j11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AF099924.2| Caenorhabditis elegans cosmid K07A9, complete seq... 44 0.55
2gb|AC021105.13| Homo sapiens BAC clone RP11-163O17 from 4, compl... 44 0.55
3emb|CR855325.15| Zebrafish DNA sequence from clone DKEY-48K8 in ... 42 2.2
4ref|XM_466039.1| Oryza sativa (japonica cultivar-group), mRNA 40 8.5
5gb|AF474373.1| Hordeum vulgare subsp. vulgare BAC 259I16, comple... 40 8.5
6ref|XM_366141.1| Magnaporthe grisea 70-15 chromosome IV predicte... 40 8.5
7ref|XM_426604.1| PREDICTED: Gallus gallus similar to 5-hydroxytr... 40 8.5
8ref|XM_425970.1| PREDICTED: Gallus gallus similar to 5-hydroxytr... 40 8.5
9ref|XM_872918.1| PREDICTED: Bos taurus similar to diacylglycerol... 40 8.5
10ref|XM_864284.1| PREDICTED: Bos taurus similar to diacylglycerol... 40 8.5
11gb|DQ493949.1| Magnaporthe grisea 70-15 clone 25N20 telomere reg... 40 8.5
12gb|AE012975.1| Thermoanaerobacter tengcongensis MB4, section 2 o... 40 8.5
13gb|AC140047.8| Mus musculus chromosome 17, clone RP23-233F10, co... 40 8.5
14gb|AC006027.5| Homo sapiens BAC clone GS1-114I9 from 7, complete... 40 8.5
15gb|BC035260.1| Homo sapiens cDNA clone IMAGE:4837452 40 8.5
16gb|CP000282.1| Saccharophagus degradans 2-40, complete genome 40 8.5
17gb|AC154207.3| Mus musculus BAC clone RP24-377E1 from chromosome... 40 8.5
18dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.5
19gb|AF490843.1| Homo sapiens clone PAC 70L19, HOXC gene cluster 40 8.5
20gb|AC012531.11|AC012531 Homo sapiens, clone RP11-83K1, complete ... 40 8.5
21gb|AC117539.6| Papio hamadryas, clone RP41-208E11, complete sequ... 40 8.5
22dbj|AP004772.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.5
23dbj|AK107402.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 8.5
24gb|AF149774.1|HSNOD1G2 Homo sapiens NOD1 protein (NOD1) gene, ex... 40 8.5
25gb|AC161466.4| Gallus gallus BAC clone CH261-104N11 from chromos... 40 8.5

>gb|AF099924.2| Caenorhabditis elegans cosmid K07A9, complete sequence
          Length = 33460

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 133   ccctccctctcctccgccgctg 154
             ||||||||||||||||||||||
Sbjct: 14162 ccctccctctcctccgccgctg 14183



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>gb|AC021105.13| Homo sapiens BAC clone RP11-163O17 from 4, complete sequence
          Length = 187360

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 487   gagtagtggtggcctaagaaag 508
             ||||||||||||||||||||||
Sbjct: 66636 gagtagtggtggcctaagaaag 66615



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>emb|CR855325.15| Zebrafish DNA sequence from clone DKEY-48K8 in linkage group 5, complete
              sequence
          Length = 198456

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 107    tcctttttcacttcatctcataaac 131
              ||||||||||| |||||||||||||
Sbjct: 171264 tcctttttcacatcatctcataaac 171240



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>ref|XM_466039.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 471

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 146 ccgccgctggatccccttct 165
           ||||||||||||||||||||
Sbjct: 241 ccgccgctggatccccttct 260



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>gb|AF474373.1| Hordeum vulgare subsp. vulgare BAC 259I16, complete sequence
          Length = 124050

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 135   ctccctctcctccgccgctg 154
             ||||||||||||||||||||
Sbjct: 92066 ctccctctcctccgccgctg 92047



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>ref|XM_366141.1| Magnaporthe grisea 70-15 chromosome IV predicted protein
           (MG10361.4) partial mRNA
          Length = 792

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 161 cttcttcatctgcagccaca 180
           ||||||||||||||||||||
Sbjct: 720 cttcttcatctgcagccaca 701



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>ref|XM_426604.1| PREDICTED: Gallus gallus similar to 5-hydroxytryptamine (serotonin)
           receptor 5A (LOC429047), mRNA
          Length = 936

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 151 gctggatccccttcttcatc 170
           ||||||||||||||||||||
Sbjct: 752 gctggatccccttcttcatc 771



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>ref|XM_425970.1| PREDICTED: Gallus gallus similar to 5-hydroxytryptamine (serotonin)
           receptor 5A (LOC428409), mRNA
          Length = 1071

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 151 gctggatccccttcttcatc 170
           ||||||||||||||||||||
Sbjct: 887 gctggatccccttcttcatc 906



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>ref|XM_872918.1| PREDICTED: Bos taurus similar to diacylglycerol kinase, theta,
            transcript variant 5 (LOC518371), mRNA
          Length = 4239

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 325  ggaggacctccagcaccacg 344
            ||||||||||||||||||||
Sbjct: 1294 ggaggacctccagcaccacg 1275



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>ref|XM_864284.1| PREDICTED: Bos taurus similar to diacylglycerol kinase, theta,
            transcript variant 3 (LOC518371), mRNA
          Length = 4233

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 325  ggaggacctccagcaccacg 344
            ||||||||||||||||||||
Sbjct: 1288 ggaggacctccagcaccacg 1269



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>gb|DQ493949.1| Magnaporthe grisea 70-15 clone 25N20 telomere region, partial
            sequence
          Length = 41552

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 323  ttggaggacctccagcacca 342
            ||||||||||||||||||||
Sbjct: 1379 ttggaggacctccagcacca 1360



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>gb|AE012975.1| Thermoanaerobacter tengcongensis MB4, section 2 of 244 of the
            complete genome
          Length = 7760

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 123  ctcataaacaccctccctct 142
            ||||||||||||||||||||
Sbjct: 5523 ctcataaacaccctccctct 5542



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>gb|AC140047.8| Mus musculus chromosome 17, clone RP23-233F10, complete sequence
          Length = 186632

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 106   ttcctttttcacttcatctcataa 129
             |||||||||| |||||||||||||
Sbjct: 79266 ttcctttttcccttcatctcataa 79289



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>gb|AC006027.5| Homo sapiens BAC clone GS1-114I9 from 7, complete sequence
          Length = 68769

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 104   ccttcctttttcacttcatctcat 127
             |||||||||||||||| |||||||
Sbjct: 49933 ccttcctttttcacttaatctcat 49910



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>gb|BC035260.1| Homo sapiens cDNA clone IMAGE:4837452
          Length = 2835

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 105  cttcctttttcacttcatct 124
            ||||||||||||||||||||
Sbjct: 2775 cttcctttttcacttcatct 2756



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>gb|CP000282.1| Saccharophagus degradans 2-40, complete genome
          Length = 5057531

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 527   acttccaatatgtctcttcatgtt 550
             ||||||||||||||| ||||||||
Sbjct: 84011 acttccaatatgtcttttcatgtt 84034



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>gb|AC154207.3| Mus musculus BAC clone RP24-377E1 from chromosome 13, complete sequence
          Length = 181174

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 228   tgctcctcctccctacgatc 247
             ||||||||||||||||||||
Sbjct: 86178 tgctcctcctccctacgatc 86197



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 146      ccgccgctggatccccttct 165
                ||||||||||||||||||||
Sbjct: 19228333 ccgccgctggatccccttct 19228314



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>gb|AF490843.1| Homo sapiens clone PAC 70L19, HOXC gene cluster
          Length = 152740

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 105   cttcctttttcacttcatct 124
             ||||||||||||||||||||
Sbjct: 59350 cttcctttttcacttcatct 59369



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>gb|AC012531.11|AC012531 Homo sapiens, clone RP11-83K1, complete sequence
          Length = 171949

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 105    cttcctttttcacttcatct 124
              ||||||||||||||||||||
Sbjct: 119158 cttcctttttcacttcatct 119177



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>gb|AC117539.6| Papio hamadryas, clone RP41-208E11, complete sequence
          Length = 208592

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 105    cttcctttttcacttcatct 124
              ||||||||||||||||||||
Sbjct: 129204 cttcctttttcacttcatct 129223



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>dbj|AP004772.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0415B12
          Length = 157419

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 146    ccgccgctggatccccttct 165
              ||||||||||||||||||||
Sbjct: 126582 ccgccgctggatccccttct 126563



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>dbj|AK107402.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-127-D11, full
           insert sequence
          Length = 2061

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 133 ccctccctctcctccgccgc 152
           ||||||||||||||||||||
Sbjct: 11  ccctccctctcctccgccgc 30



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>gb|AF149774.1|HSNOD1G2 Homo sapiens NOD1 protein (NOD1) gene, exons 4 through 14 and complete
             cds
          Length = 34223

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 104   ccttcctttttcacttcatctcat 127
             |||||||||||||||| |||||||
Sbjct: 18641 ccttcctttttcacttaatctcat 18664



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>gb|AC161466.4| Gallus gallus BAC clone CH261-104N11 from chromosome ul, complete
             sequence
          Length = 189905

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 151   gctggatccccttcttcatc 170
             ||||||||||||||||||||
Sbjct: 93528 gctggatccccttcttcatc 93509


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,967,276
Number of Sequences: 3902068
Number of extensions: 4967276
Number of successful extensions: 100208
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 100103
Number of HSP's gapped (non-prelim): 105
length of query: 626
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 603
effective length of database: 17,143,297,704
effective search space: 10337408515512
effective search space used: 10337408515512
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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