ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal13i15
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL606660.3|OSJN00111 Oryza sativa genomic DNA, chromosome 4,... 48 0.019
2emb|AL606645.2|OSJN00079 Oryza sativa genomic DNA, chromosome 4,... 48 0.019
3dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.019
4dbj|AK068767.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.019
5dbj|AK067242.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.019
6dbj|AK064902.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.019
7dbj|AK061831.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.019
8ref|XM_415716.1| PREDICTED: Gallus gallus similar to Myeloperoxi... 42 1.1
9gb|AY895166.1| Gallus gallus BAC bW108010 chemokine-like ligand ... 42 1.1
10emb|BX255952.9| Zebrafish DNA sequence from clone CH211-267P8 in... 42 1.1
11gb|AC163211.5| Mus musculus chromosome 7, clone RP24-341C24, com... 40 4.5
12emb|AL604027.9| Mouse DNA sequence from clone RP23-155G20 on chr... 40 4.5
13gb|AC153892.12| Mus musculus 10 BAC RP23-113O12 (Roswell Park Ca... 40 4.5
14dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.5
15dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.5
16gb|AC008177.3| Homo sapiens BAC clone RP11-527A7 from 2, complet... 40 4.5
17gb|AC069070.19| Homo sapiens 3 BAC RP11-575H20 (Roswell Park Can... 40 4.5
18dbj|AP003344.2| Oryza sativa (japonica cultivar-group) genomic D... 40 4.5
19gb|AC102906.12| Mus musculus chromosome 7, clone RP24-291N22, co... 40 4.5
20gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 4.5
21emb|AL713911.3|CNS07YQC Oryza sativa chromosome 12, . BAC OSJNBb... 40 4.5
22gb|AC124344.6| Mus musculus BAC clone RP24-448A7 from 3, complet... 40 4.5

>emb|AL606660.3|OSJN00111 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0085C12,
              complete sequence
          Length = 122721

 Score = 48.1 bits (24), Expect = 0.019
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                              
Query: 27     tgattgctcgaggaaggcagcgtgggagcaat 58
              ||||||||||||||||||||| | ||||||||
Sbjct: 118245 tgattgctcgaggaaggcagcattggagcaat 118214



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>emb|AL606645.2|OSJN00079 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0053K19,
             complete sequence
          Length = 187601

 Score = 48.1 bits (24), Expect = 0.019
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                             
Query: 27    tgattgctcgaggaaggcagcgtgggagcaat 58
             ||||||||||||||||||||| | ||||||||
Sbjct: 36698 tgattgctcgaggaaggcagcattggagcaat 36667



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 48.1 bits (24), Expect = 0.019
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                                
Query: 27       tgattgctcgaggaaggcagcgtgggagcaat 58
                ||||||||||||||||||||| | ||||||||
Sbjct: 31703428 tgattgctcgaggaaggcagcattggagcaat 31703397



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>dbj|AK068767.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013168B07, full
            insert sequence
          Length = 3529

 Score = 48.1 bits (24), Expect = 0.019
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                            
Query: 27   tgattgctcgaggaaggcagcgtgggagcaat 58
            ||||||||||||||||||||| | ||||||||
Sbjct: 3268 tgattgctcgaggaaggcagcattggagcaat 3299



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>dbj|AK067242.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013095J23, full
            insert sequence
          Length = 1565

 Score = 48.1 bits (24), Expect = 0.019
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                            
Query: 27   tgattgctcgaggaaggcagcgtgggagcaat 58
            ||||||||||||||||||||| | ||||||||
Sbjct: 1276 tgattgctcgaggaaggcagcattggagcaat 1307



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>dbj|AK064902.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000L17, full
            insert sequence
          Length = 2329

 Score = 48.1 bits (24), Expect = 0.019
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                            
Query: 27   tgattgctcgaggaaggcagcgtgggagcaat 58
            ||||||||||||||||||||| | ||||||||
Sbjct: 2074 tgattgctcgaggaaggcagcattggagcaat 2105



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>dbj|AK061831.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-D02, full
           insert sequence
          Length = 1142

 Score = 48.1 bits (24), Expect = 0.019
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 27  tgattgctcgaggaaggcagcgtgggagcaat 58
           ||||||||||||||||||||| | ||||||||
Sbjct: 881 tgattgctcgaggaaggcagcattggagcaat 912



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>ref|XM_415716.1| PREDICTED: Gallus gallus similar to Myeloperoxidase precursor (MPO)
            (LOC417467), mRNA
          Length = 3369

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 60   tatccttgctcttcctcgtgg 80
            |||||||||||||||||||||
Sbjct: 2700 tatccttgctcttcctcgtgg 2720



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>gb|AY895166.1| Gallus gallus BAC bW108010 chemokine-like ligand 1, SCYA4, chemokine
             K203, and chemokine ah294 genes, complete cds
          Length = 112034

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 60    tatccttgctcttcctcgtgg 80
             |||||||||||||||||||||
Sbjct: 94705 tatccttgctcttcctcgtgg 94685



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>emb|BX255952.9| Zebrafish DNA sequence from clone CH211-267P8 in linkage group 24,
             complete sequence
          Length = 121889

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 268   tgaaacattgtaatttaactgcatt 292
             |||||||||||||||||| ||||||
Sbjct: 80171 tgaaacattgtaatttaattgcatt 80195



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>gb|AC163211.5| Mus musculus chromosome 7, clone RP24-341C24, complete sequence
          Length = 148004

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 299    cttaatattggtgatgaatg 318
              ||||||||||||||||||||
Sbjct: 105609 cttaatattggtgatgaatg 105628



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>emb|AL604027.9| Mouse DNA sequence from clone RP23-155G20 on chromosome 11, complete
             sequence
          Length = 196398

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 298   tcttaatattggtgatgaat 317
             ||||||||||||||||||||
Sbjct: 96971 tcttaatattggtgatgaat 96990



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>gb|AC153892.12| Mus musculus 10 BAC RP23-113O12 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 197426

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 38     ggaaggcagcgtgggagcaa 57
              ||||||||||||||||||||
Sbjct: 147320 ggaaggcagcgtgggagcaa 147301



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 36       gaggaaggcagcgtgggagc 55
                ||||||||||||||||||||
Sbjct: 15488611 gaggaaggcagcgtgggagc 15488630



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 270      aaacattgtaatttaactgc 289
                ||||||||||||||||||||
Sbjct: 32840768 aaacattgtaatttaactgc 32840749



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>gb|AC008177.3| Homo sapiens BAC clone RP11-527A7 from 2, complete sequence
          Length = 152996

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 282  ttaactgcattggcattctt 301
            ||||||||||||||||||||
Sbjct: 5386 ttaactgcattggcattctt 5367



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>gb|AC069070.19| Homo sapiens 3 BAC RP11-575H20 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 154828

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 163   tatactgtcagcgtgatgtg 182
             ||||||||||||||||||||
Sbjct: 81547 tatactgtcagcgtgatgtg 81528



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>dbj|AP003344.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0413G02
          Length = 155633

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 270   aaacattgtaatttaactgc 289
             ||||||||||||||||||||
Sbjct: 62173 aaacattgtaatttaactgc 62154



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>gb|AC102906.12| Mus musculus chromosome 7, clone RP24-291N22, complete sequence
          Length = 132746

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 299   cttaatattggtgatgaatg 318
             ||||||||||||||||||||
Sbjct: 91356 cttaatattggtgatgaatg 91337



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 36       gaggaaggcagcgtgggagc 55
                ||||||||||||||||||||
Sbjct: 15442894 gaggaaggcagcgtgggagc 15442913



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>emb|AL713911.3|CNS07YQC Oryza sativa chromosome 12, . BAC OSJNBb0066P16 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 126680

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 36    gaggaaggcagcgtgggagc 55
             ||||||||||||||||||||
Sbjct: 13876 gaggaaggcagcgtgggagc 13857



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>gb|AC124344.6| Mus musculus BAC clone RP24-448A7 from 3, complete sequence
          Length = 219818

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 237   tagggcagagttggtggtgt 256
             ||||||||||||||||||||
Sbjct: 93496 tagggcagagttggtggtgt 93477


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,429,965
Number of Sequences: 3902068
Number of extensions: 2429965
Number of successful extensions: 41500
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 41412
Number of HSP's gapped (non-prelim): 88
length of query: 342
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 320
effective length of database: 17,147,199,772
effective search space: 5487103927040
effective search space used: 5487103927040
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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