ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal13i06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL663091.13| Mouse DNA sequence from clone RP23-392P11 on ch... 42 0.37
2gb|AC126932.4| Mus musculus BAC clone RP24-80G20 from chromosome... 40 1.5
3ref|XM_415431.1| PREDICTED: Gallus gallus similar to TSP1-repeat... 38 5.8
4gb|AC146008.3| Pan troglodytes BAC clone RP43-13N15 from 7, comp... 38 5.8
5gb|AC074347.8| Homo sapiens BAC clone RP11-646H18 from 7, comple... 38 5.8
6dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 38 5.8
7gb|AC146009.3| Pan troglodytes BAC clone RP43-13O12 from chromos... 38 5.8
8dbj|AP006149.2| Oryza sativa (japonica cultivar-group) genomic D... 38 5.8
9emb|CR847960.14| Zebrafish DNA sequence from clone DKEY-30E1 in ... 38 5.8
10emb|AL844197.6| Zebrafish DNA sequence from clone DKEY-156L9 in ... 38 5.8

>emb|AL663091.13| Mouse DNA sequence from clone RP23-392P11 on chromosome 2, complete
              sequence
          Length = 196078

 Score = 42.1 bits (21), Expect = 0.37
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 12     tgtgggtttcgttttgtcagtgtgt 36
              |||||||||| ||||||||||||||
Sbjct: 102567 tgtgggtttctttttgtcagtgtgt 102591



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>gb|AC126932.4| Mus musculus BAC clone RP24-80G20 from chromosome 3, complete sequence
          Length = 214712

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 71     attacttgtctctgttaccaaatg 94
              ||||||||| ||||||||||||||
Sbjct: 102396 attacttgtatctgttaccaaatg 102373



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>ref|XM_415431.1| PREDICTED: Gallus gallus similar to TSP1-repeats containing protein
            (LOC417148), mRNA
          Length = 2944

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 62   gcctgaaccattacttgtctctg 84
            ||||||||||||| |||||||||
Sbjct: 2686 gcctgaaccattaattgtctctg 2664



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>gb|AC146008.3| Pan troglodytes BAC clone RP43-13N15 from 7, complete sequence
          Length = 151195

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 77    tgtctctgttaccaaatgt 95
             |||||||||||||||||||
Sbjct: 90495 tgtctctgttaccaaatgt 90513



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>gb|AC074347.8| Homo sapiens BAC clone RP11-646H18 from 7, complete sequence
          Length = 133691

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 77   tgtctctgttaccaaatgt 95
            |||||||||||||||||||
Sbjct: 2516 tgtctctgttaccaaatgt 2498



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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 3        aactctgtatgtgggtttc 21
                |||||||||||||||||||
Sbjct: 20932982 aactctgtatgtgggtttc 20933000



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>gb|AC146009.3| Pan troglodytes BAC clone RP43-13O12 from chromosome 7, complete
             sequence
          Length = 169801

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 77    tgtctctgttaccaaatgt 95
             |||||||||||||||||||
Sbjct: 80336 tgtctctgttaccaaatgt 80354



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>dbj|AP006149.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:B1274F11
          Length = 171257

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 3     aactctgtatgtgggtttc 21
             |||||||||||||||||||
Sbjct: 25071 aactctgtatgtgggtttc 25089



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>emb|CR847960.14| Zebrafish DNA sequence from clone DKEY-30E1 in linkage group 10, complete
              sequence
          Length = 216655

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 85     ttaccaaatgtctctgcattatt 107
              |||| ||||||||||||||||||
Sbjct: 172895 ttacaaaatgtctctgcattatt 172873



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>emb|AL844197.6| Zebrafish DNA sequence from clone DKEY-156L9 in linkage group 10,
             complete sequence
          Length = 184895

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 85    ttaccaaatgtctctgcattatt 107
             |||| ||||||||||||||||||
Sbjct: 59371 ttacaaaatgtctctgcattatt 59393


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 924,795
Number of Sequences: 3902068
Number of extensions: 924795
Number of successful extensions: 65079
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 65050
Number of HSP's gapped (non-prelim): 29
length of query: 124
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 103
effective length of database: 17,151,101,840
effective search space: 1766563489520
effective search space used: 1766563489520
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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