Clone Information

BLAST Search Result

Clone Name	baal13g12
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_476696.1\| Oryza sativa (japonica cultivar-group), mRNA	339	7e-90
2	dbj\|AK120286.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	339	7e-90
3	dbj\|AP008213.1\| Oryza sativa (japonica cultivar-group) genomic D...	283	3e-73
4	dbj\|AP003847.3\| Oryza sativa (japonica cultivar-group) genomic D...	283	3e-73
5	gb\|AY110157.1\| Zea mays CL7807_-1 mRNA sequence	228	2e-56
6	dbj\|AP006407.1\| Lotus japonicus genomic DNA, chromosome 4, clone...	70	9e-09
7	gb\|AC097174.2\| Oryza sativa (japonica cultivar-group) chromosome...	48	0.035
8	dbj\|AP008211.1\| Oryza sativa (japonica cultivar-group) genomic D...	48	0.035
9	ref\|NM_125086.2\| Arabidopsis thaliana catalytic/ lactoylglutathi...	42	2.1
10	emb\|AL365276.9\| Human DNA sequence from clone RP11-274C15 on chr...	42	2.1
11	gb\|BT024587.1\| Arabidopsis thaliana At5g57040 mRNA, complete cds	42	2.1
12	gb\|AY088499.1\| Arabidopsis thaliana clone 7233 mRNA, complete se...	42	2.1
13	dbj\|AB024035.1\| Arabidopsis thaliana genomic DNA, chromosome 5, ...	42	2.1
14	gb\|AC163032.5\| Mus musculus BAC clone RP24-144G20 from chromosom...	40	8.5
15	ref\|NM_012761.1\| Rattus norvegicus Sp4 transcription factor (Sp4...	40	8.5
16	ref\|NM_009239.2\| Mus musculus trans-acting transcription factor ...	40	8.5
17	gb\|BC076630.1\| Mus musculus trans-acting transcription factor 4,...	40	8.5
18	ref\|XM_539462.2\| PREDICTED: Canis familiaris similar to Sp4 tran...	40	8.5
19	ref\|XM_857849.1\| PREDICTED: Canis familiaris similar to Sp4 tran...	40	8.5
20	emb\|BX927371.12\| Zebrafish DNA sequence from clone DKEY-1C17 in ...	40	8.5
21	gb\|AC007030.3\| Homo sapiens PAC clone RP5-1112I4 from 7, complet...	40	8.5
22	emb\|AL356137.10\| Human DNA sequence from clone RP11-515I12 on ch...	40	8.5
23	emb\|AL049565.3\|HS751D22 Human DNA sequence from clone RP4-751D22...	40	8.5
24	gb\|AC163034.4\| Mus musculus BAC clone RP23-394C13 from chromosom...	40	8.5
25	emb\|AL589651.8\| Mouse DNA sequence from clone RP23-138F20 on chr...	40	8.5
26	emb\|AL023287.1\|SPBC23E6 S.pombe chromosome II cosmid c23E6	40	8.5
27	gb\|AC135849.6\| Pan troglodytes clone ptb-33n14, complete sequence	40	8.5
28	gb\|AC090338.6\| Homo sapiens chromosome 18, clone RP11-704C2, com...	40	8.5
29	gb\|AC015617.8\| Homo sapiens, clone RP11-45H23, complete sequence	40	8.5
30	ref\|XM_691549.1\| PREDICTED: Danio rerio similar to chromodomain ...	40	8.5
31	gb\|AC124172.4\| Mus musculus BAC clone RP23-168P24 from chromosom...	40	8.5
32	ref\|NM_001022528.1\| Schizosaccharomyces pombe 972h- hypothetical...	40	8.5
33	gb\|AC000085.5\| Homo sapiens Chromosome 22q11.2 BAC Clone 72f8 In...	40	8.5
34	gb\|AC000073.1\| Homo sapiens Chromosome 22q11.2 Cosmid Clone 19d3...	40	8.5
35	dbj\|AB221633.1\| Mus musculus cDNA pooled tissues:(tissue_type=br...	40	8.5
36	ref\|XM_579348.1\| PREDICTED: Rattus norvegicus Sp4 transcription ...	40	8.5
37	dbj\|BA000040.2\| Bradyrhizobium japonicum USDA 110 DNA, complete ...	40	8.5
38	emb\|AL808104.14\| Mouse DNA sequence from clone RP23-30M20 on chr...	40	8.5
39	emb\|BX323818.8\| Zebrafish DNA sequence from clone DKEY-48H7 in l...	40	8.5
40	gb\|U62522.1\|MMU62522 Mus musculus zinc finger transcription fact...	40	8.5
41	emb\|AL928637.7\| Zebrafish DNA sequence from clone CH211-227I6, c...	40	8.5
42	gb\|U07610.1\|SENDHF1B Rattus norvegicus Sprague-Dawley zinc finge...	40	8.5

>ref|XM_476696.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 495

 Score =  339 bits (171), Expect = 7e-90
 Identities = 294/334 (88%), Gaps = 1/334 (0%)
 Strand = Plus / Plus

                                                                       
Query: 2   aatcttgaaaggtcgatggcattctaccaggnacatccttggtctaaaggtgaatcctgc 61
           |||||||||||||| ||||| |||||| | |  | | |||||||| ||||||||||||||
Sbjct: 163 aatcttgaaaggtcaatggccttctacaaagatc-tgcttggtcttaaggtgaatcctgc 221

                                                                       
Query: 62  taggccaaatgacaagcttccttacagaggtgcttggctctgggttggttctgagatgat 121
           ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 taggccaaccgacaagcttccttacagaggtgcttggctctgggttggttctgagatgat 281

                                                                       
Query: 122 ccacttgatggagctgccaaatccggatccactgacaggacgcccagagcatggcgggcg 181
            ||||||||||||||||||||||| |||||| |||| || |||||||||||||| || ||
Sbjct: 282 tcacttgatggagctgccaaatcccgatccattgactgggcgcccagagcatgggggacg 341

                                                                       
Query: 182 tgatcgtcatacctgtatagcaatcagagatgtcttgaagttgaaagaaatctttgacaa 241
           |||||||||||||||||| || |||| |||||| |||||||| |||||||||||||||||
Sbjct: 342 tgatcgtcatacctgtatggcgatcaaagatgtgttgaagttaaaagaaatctttgacaa 401

                                                                       
Query: 242 agcggaaatcagctacacactcagcaaatctgggcgtccagcgatctttgcacgagaccc 301
           ||| | |||||  |||||||| |||||||| ||||| ||||| || ||||| || |||||
Sbjct: 402 agccggaatcaaatacacacttagcaaatcagggcgaccagcaatatttgctcgggaccc 461

                                             
Query: 302 ggatggaaacgcgttggaatttacacaagtgtag 335
           ||| ||||| ||  |||| || ||||||||||||
Sbjct: 462 ggacggaaatgcactggagttcacacaagtgtag 495

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>dbj|AK120286.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013050B15, full
           insert sequence
          Length = 902

 Score =  339 bits (171), Expect = 7e-90
 Identities = 294/334 (88%), Gaps = 1/334 (0%)
 Strand = Plus / Plus

                                                                       
Query: 2   aatcttgaaaggtcgatggcattctaccaggnacatccttggtctaaaggtgaatcctgc 61
           |||||||||||||| ||||| |||||| | |  | | |||||||| ||||||||||||||
Sbjct: 293 aatcttgaaaggtcaatggccttctacaaagatc-tgcttggtcttaaggtgaatcctgc 351

                                                                       
Query: 62  taggccaaatgacaagcttccttacagaggtgcttggctctgggttggttctgagatgat 121
           ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 taggccaaccgacaagcttccttacagaggtgcttggctctgggttggttctgagatgat 411

                                                                       
Query: 122 ccacttgatggagctgccaaatccggatccactgacaggacgcccagagcatggcgggcg 181
            ||||||||||||||||||||||| |||||| |||| || |||||||||||||| || ||
Sbjct: 412 tcacttgatggagctgccaaatcccgatccattgactgggcgcccagagcatgggggacg 471

                                                                       
Query: 182 tgatcgtcatacctgtatagcaatcagagatgtcttgaagttgaaagaaatctttgacaa 241
           |||||||||||||||||| || |||| |||||| |||||||| |||||||||||||||||
Sbjct: 472 tgatcgtcatacctgtatggcgatcaaagatgtgttgaagttaaaagaaatctttgacaa 531

                                                                       
Query: 242 agcggaaatcagctacacactcagcaaatctgggcgtccagcgatctttgcacgagaccc 301
           ||| | |||||  |||||||| |||||||| ||||| ||||| || ||||| || |||||
Sbjct: 532 agccggaatcaaatacacacttagcaaatcagggcgaccagcaatatttgctcgggaccc 591

                                             
Query: 302 ggatggaaacgcgttggaatttacacaagtgtag 335
           ||| ||||| ||  |||| || ||||||||||||
Sbjct: 592 ggacggaaatgcactggagttcacacaagtgtag 625

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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score =  283 bits (143), Expect = 3e-73
 Identities = 188/203 (92%)
 Strand = Plus / Minus

                                                                           
Query: 42      ggtctaaaggtgaatcctgctaggccaaatgacaagcttccttacagaggtgcttggctc 101
               ||||| ||||||||||||||||||||||  ||||||||||||||||||||||||||||||
Sbjct: 3278097 ggtcttaaggtgaatcctgctaggccaaccgacaagcttccttacagaggtgcttggctc 3278038

                                                                           
Query: 102     tgggttggttctgagatgatccacttgatggagctgccaaatccggatccactgacagga 161
               |||||||||||||||||||| ||||||||||||||||||||||| |||||| |||| || 
Sbjct: 3278037 tgggttggttctgagatgattcacttgatggagctgccaaatcccgatccattgactggg 3277978

                                                                           
Query: 162     cgcccagagcatggcgggcgtgatcgtcatacctgtatagcaatcagagatgtcttgaag 221
               |||||||||||||| || |||||||||||||||||||| || |||| |||||| ||||||
Sbjct: 3277977 cgcccagagcatgggggacgtgatcgtcatacctgtatggcgatcaaagatgtgttgaag 3277918

                                      
Query: 222     ttgaaagaaatctttgacaaagc 244
               || ||||||||||||||||||||
Sbjct: 3277917 ttaaaagaaatctttgacaaagc 3277895



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 68/81 (83%)
 Strand = Plus / Minus

                                                                           
Query: 255     tacacactcagcaaatctgggcgtccagcgatctttgcacgagacccggatggaaacgcg 314
               |||||||| |||||||| ||||| ||||| || ||||| || |||||||| ||||| || 
Sbjct: 3277312 tacacacttagcaaatcagggcgaccagcaatatttgctcgggacccggacggaaatgca 3277253

                                    
Query: 315     ttggaatttacacaagtgtag 335
                |||| || ||||||||||||
Sbjct: 3277252 ctggagttcacacaagtgtag 3277232

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>dbj|AP003847.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1714_H10
          Length = 191580

 Score =  283 bits (143), Expect = 3e-73
 Identities = 188/203 (92%)
 Strand = Plus / Minus

                                                                         
Query: 42    ggtctaaaggtgaatcctgctaggccaaatgacaagcttccttacagaggtgcttggctc 101
             ||||| ||||||||||||||||||||||  ||||||||||||||||||||||||||||||
Sbjct: 87790 ggtcttaaggtgaatcctgctaggccaaccgacaagcttccttacagaggtgcttggctc 87731

                                                                         
Query: 102   tgggttggttctgagatgatccacttgatggagctgccaaatccggatccactgacagga 161
             |||||||||||||||||||| ||||||||||||||||||||||| |||||| |||| || 
Sbjct: 87730 tgggttggttctgagatgattcacttgatggagctgccaaatcccgatccattgactggg 87671

                                                                         
Query: 162   cgcccagagcatggcgggcgtgatcgtcatacctgtatagcaatcagagatgtcttgaag 221
             |||||||||||||| || |||||||||||||||||||| || |||| |||||| ||||||
Sbjct: 87670 cgcccagagcatgggggacgtgatcgtcatacctgtatggcgatcaaagatgtgttgaag 87611

                                    
Query: 222   ttgaaagaaatctttgacaaagc 244
             || ||||||||||||||||||||
Sbjct: 87610 ttaaaagaaatctttgacaaagc 87588



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 68/81 (83%)
 Strand = Plus / Minus

                                                                         
Query: 255   tacacactcagcaaatctgggcgtccagcgatctttgcacgagacccggatggaaacgcg 314
             |||||||| |||||||| ||||| ||||| || ||||| || |||||||| ||||| || 
Sbjct: 87005 tacacacttagcaaatcagggcgaccagcaatatttgctcgggacccggacggaaatgca 86946

                                  
Query: 315   ttggaatttacacaagtgtag 335
              |||| || ||||||||||||
Sbjct: 86945 ctggagttcacacaagtgtag 86925

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>gb|AY110157.1| Zea mays CL7807_-1 mRNA sequence
          Length = 672

 Score =  228 bits (115), Expect = 2e-56
 Identities = 282/338 (83%), Gaps = 1/338 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaatcttgaaaggtcgatggcattctaccaggnacatccttggtctaaaggtgaatcctg 60
           ||||||||| |||||  |||| |||||| ||| || | || ||||| | ||||||||| |
Sbjct: 154 gaatcttgagaggtcactggcgttctacaagg-acctactgggtctgagggtgaatccag 212

                                                                       
Query: 61  ctaggccaaatgacaagcttccttacagaggtgcttggctctgggttggttctgagatga 120
           || ||||||| |||||||| || ||||| || |||||||||||||| |||||||||||||
Sbjct: 213 ctcggccaaacgacaagctcccgtacaggggcgcttggctctgggtgggttctgagatga 272

                                                                       
Query: 121 tccacttgatggagctgccaaatccggatccactgacaggacgcccagagcatggcgggc 180
           ||||| ||||||||||||| ||||| |||||  |||| |||||||| ||||| ||||| |
Sbjct: 273 tccacctgatggagctgccgaatcctgatccgttgaccggacgccccgagcacggcggac 332

                                                                       
Query: 181 gtgatcgtcatacctgtatagcaatcagagatgtcttgaagttgaaagaaatctttgaca 240
           ||||||| |||||||||||||| || ||||||||  ||||| ||||||||      ||  
Sbjct: 333 gtgatcggcatacctgtatagcgattagagatgttctgaagctgaaagaagnnnnngatg 392

                                                                       
Query: 241 aagcggaaatcagctacacactcagcaaatctgggcgtccagcgatctttgcacgagacc 300
           |||| | ||||||||||||||| |||||||| ||| |  |||||||||||||| ||||||
Sbjct: 393 aagctggaatcagctacacactaagcaaatccgggagggcagcgatctttgcaagagacc 452

                                                 
Query: 301 cggatggaaacgcgttggaatttacacaagtgtagcaa 338
           | || || ||||||||||| || || ||||||||||||
Sbjct: 453 cagacgggaacgcgttggagttcacccaagtgtagcaa 490

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>dbj|AP006407.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT23O19, TM0297a,
             complete sequence
          Length = 61781

 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 71/83 (85%)
 Strand = Plus / Plus

                                                                         
Query: 63    aggccaaatgacaagcttccttacagaggtgcttggctctgggttggttctgagatgatc 122
             |||||| |||| |||||||| ||||||||||||||| | ||||| || || |||||||| 
Sbjct: 56893 aggccacatgataagcttccatacagaggtgcttggttgtgggtaggctccgagatgatt 56952

                                    
Query: 123   cacttgatggagctgccaaatcc 145
             ||  |||||||||| ||||||||
Sbjct: 56953 catctgatggagcttccaaatcc 56975

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>gb|AC097174.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1111_A10,
             complete sequence
          Length = 155106

 Score = 48.1 bits (24), Expect = 0.035
 Identities = 42/48 (87%)
 Strand = Plus / Plus

                                                             
Query: 87    agaggtgcttggctctgggttggttctgagatgatccacttgatggag 134
             |||| ||||||||||||| ||||||| ||| ||||||| |||| ||||
Sbjct: 38848 agagatgcttggctctggattggttcagaggtgatccatttgacggag 38895

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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 48.1 bits (24), Expect = 0.035
 Identities = 42/48 (87%)
 Strand = Plus / Plus

                                                               
Query: 87      agaggtgcttggctctgggttggttctgagatgatccacttgatggag 134
               |||| ||||||||||||| ||||||| ||| ||||||| |||| ||||
Sbjct: 5124345 agagatgcttggctctggattggttcagaggtgatccatttgacggag 5124392

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>ref|NM_125086.2| Arabidopsis thaliana catalytic/ lactoylglutathione lyase AT5G57040
           mRNA, complete cds
          Length = 854

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 66/81 (81%)
 Strand = Plus / Plus

                                                                       
Query: 72  gacaagcttccttacagaggtgcttggctctgggttggttctgagatgatccacttgatg 131
           ||||||||||| || ||||| || ||| | ||||| ||||| || ||||| ||  | |||
Sbjct: 461 gacaagcttccatatagaggagcatggttatgggtaggttcagaaatgattcatcttatg 520

                                
Query: 132 gagctgccaaatccggatcca 152
           ||||| |||||||| ||||||
Sbjct: 521 gagcttccaaatccagatcca 541

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>emb|AL365276.9| Human DNA sequence from clone RP11-274C15 on chromosome 6, complete
           sequence
          Length = 158737

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 68  aaatgacaagcttccttacagaggt 92
           |||||||||||||| ||||||||||
Sbjct: 741 aaatgacaagcttcattacagaggt 765

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>gb|BT024587.1| Arabidopsis thaliana At5g57040 mRNA, complete cds
          Length = 594

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 66/81 (81%)
 Strand = Plus / Plus

                                                                       
Query: 72  gacaagcttccttacagaggtgcttggctctgggttggttctgagatgatccacttgatg 131
           ||||||||||| || ||||| || ||| | ||||| ||||| || ||||| ||  | |||
Sbjct: 331 gacaagcttccatatagaggagcatggttatgggtaggttcagaaatgattcatcttatg 390

                                
Query: 132 gagctgccaaatccggatcca 152
           ||||| |||||||| ||||||
Sbjct: 391 gagcttccaaatccagatcca 411

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>gb|AY088499.1| Arabidopsis thaliana clone 7233 mRNA, complete sequence
          Length = 781

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 66/81 (81%)
 Strand = Plus / Plus

                                                                       
Query: 72  gacaagcttccttacagaggtgcttggctctgggttggttctgagatgatccacttgatg 131
           ||||||||||| || ||||| || ||| | ||||| ||||| || ||||| ||  | |||
Sbjct: 388 gacaagcttccatatagaggagcatggttatgggtaggttcagaaatgattcatcttatg 447

                                
Query: 132 gagctgccaaatccggatcca 152
           ||||| |||||||| ||||||
Sbjct: 448 gagcttccaaatccagatcca 468

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>dbj|AB024035.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MHM17
          Length = 78423

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 66/81 (81%)
 Strand = Plus / Minus

                                                                         
Query: 72    gacaagcttccttacagaggtgcttggctctgggttggttctgagatgatccacttgatg 131
             ||||||||||| || ||||| || ||| | ||||| ||||| || ||||| ||  | |||
Sbjct: 68860 gacaagcttccatatagaggagcatggttatgggtaggttcagaaatgattcatcttatg 68801

                                  
Query: 132   gagctgccaaatccggatcca 152
             ||||| |||||||| ||||||
Sbjct: 68800 gagcttccaaatccagatcca 68780

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>gb|AC163032.5| Mus musculus BAC clone RP24-144G20 from chromosome 12, complete
             sequence
          Length = 186416

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 83    ttacagaggtgcttggctct 102
             ||||||||||||||||||||
Sbjct: 41521 ttacagaggtgcttggctct 41540

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>ref|NM_012761.1| Rattus norvegicus Sp4 transcription factor (Sp4), mRNA
          Length = 3489

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 83   ttacagaggtgcttggctct 102
            ||||||||||||||||||||
Sbjct: 2393 ttacagaggtgcttggctct 2412

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>ref|NM_009239.2| Mus musculus trans-acting transcription factor 4 (Sp4), mRNA
          Length = 5699

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 83   ttacagaggtgcttggctct 102
            ||||||||||||||||||||
Sbjct: 2382 ttacagaggtgcttggctct 2401

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>gb|BC076630.1| Mus musculus trans-acting transcription factor 4, mRNA (cDNA clone
            MGC:100176 IMAGE:30637762), complete cds
          Length = 5450

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 83   ttacagaggtgcttggctct 102
            ||||||||||||||||||||
Sbjct: 2377 ttacagaggtgcttggctct 2396

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>ref|XM_539462.2| PREDICTED: Canis familiaris similar to Sp4 transcription factor,
            transcript variant 1 (LOC482345), mRNA
          Length = 3021

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 83   ttacagaggtgcttggctct 102
            ||||||||||||||||||||
Sbjct: 2461 ttacagaggtgcttggctct 2480

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>ref|XM_857849.1| PREDICTED: Canis familiaris similar to Sp4 transcription factor,
            transcript variant 3 (LOC482345), mRNA
          Length = 2973

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 83   ttacagaggtgcttggctct 102
            ||||||||||||||||||||
Sbjct: 2413 ttacagaggtgcttggctct 2432

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>emb|BX927371.12| Zebrafish DNA sequence from clone DKEY-1C17 in linkage group 7,
             complete sequence
          Length = 154034

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 579   attccttccaaattatgata 598
             ||||||||||||||||||||
Sbjct: 36995 attccttccaaattatgata 37014

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>gb|AC007030.3| Homo sapiens PAC clone RP5-1112I4 from 7, complete sequence
          Length = 117853

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 126   ttgatggagctgccaaatcc 145
             ||||||||||||||||||||
Sbjct: 76150 ttgatggagctgccaaatcc 76131

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>emb|AL356137.10| Human DNA sequence from clone RP11-515I12 on chromosome 6, complete
             sequence
          Length = 135837

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 556   atatggacaaatgaatattg 575
             ||||||||||||||||||||
Sbjct: 88063 atatggacaaatgaatattg 88044

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>emb|AL049565.3|HS751D22 Human DNA sequence from clone RP4-751D22 on chromosome Xq25-26.3,
             complete sequence
          Length = 85538

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 548   tgacatggatatggacaaat 567
             ||||||||||||||||||||
Sbjct: 66886 tgacatggatatggacaaat 66867

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>gb|AC163034.4| Mus musculus BAC clone RP23-394C13 from chromosome 12, complete sequence
          Length = 187877

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 83     ttacagaggtgcttggctct 102
              ||||||||||||||||||||
Sbjct: 150777 ttacagaggtgcttggctct 150796

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>emb|AL589651.8| Mouse DNA sequence from clone RP23-138F20 on chromosome 13 Contains five
              genes for olfactory receptors, a novel gene, the H1f5 gene
              for H1 histone family member 5, three genes and one
              pseudogene for H2a histone family members, four genes for
              H2b, two genes for H4, and two genes for H3 histone family
              members and seven CpG islands, complete sequence
          Length = 222823

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 204    atcagagatgtcttgaagtt 223
              ||||||||||||||||||||
Sbjct: 211013 atcagagatgtcttgaagtt 211032

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>emb|AL023287.1|SPBC23E6 S.pombe chromosome II cosmid c23E6
          Length = 34486

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 531   acagaaaatgttgccaatgacatggata 558
             ||||||||| ||||||||||| ||||||
Sbjct: 18839 acagaaaattttgccaatgacttggata 18812

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>gb|AC135849.6| Pan troglodytes clone ptb-33n14, complete sequence
          Length = 72820

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 215  cttgaagttgaaagaaatct 234
            ||||||||||||||||||||
Sbjct: 6851 cttgaagttgaaagaaatct 6832

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>gb|AC090338.6| Homo sapiens chromosome 18, clone RP11-704C2, complete sequence
          Length = 200525

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 216   ttgaagttgaaagaaatctt 235
             ||||||||||||||||||||
Sbjct: 87955 ttgaagttgaaagaaatctt 87974

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>gb|AC015617.8| Homo sapiens, clone RP11-45H23, complete sequence
          Length = 160541

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 216    ttgaagttgaaagaaatctt 235
              ||||||||||||||||||||
Sbjct: 157463 ttgaagttgaaagaaatctt 157444

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>ref|XM_691549.1| PREDICTED: Danio rerio similar to chromodomain helicase DNA binding
           protein 3 isoform 2 (LOC568230), mRNA
          Length = 5648

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 579 attccttccaaattatgata 598
           ||||||||||||||||||||
Sbjct: 76  attccttccaaattatgata 57

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>gb|AC124172.4| Mus musculus BAC clone RP23-168P24 from chromosome 1, complete sequence
          Length = 192946

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 223   tgaaagaaatctttgacaaa 242
             ||||||||||||||||||||
Sbjct: 75681 tgaaagaaatctttgacaaa 75700

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>ref|NM_001022528.1| Schizosaccharomyces pombe 972h- hypothetical protein
           (SPBC23E6.07c), partial mRNA
          Length = 2805

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 531 acagaaaatgttgccaatgacatggata 558
           ||||||||| ||||||||||| ||||||
Sbjct: 385 acagaaaattttgccaatgacttggata 412

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>gb|AC000085.5| Homo sapiens Chromosome 22q11.2 BAC Clone 72f8 In DGCR Region, complete
             sequence
          Length = 100152

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 215   cttgaagttgaaagaaatct 234
             ||||||||||||||||||||
Sbjct: 86966 cttgaagttgaaagaaatct 86985

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>gb|AC000073.1| Homo sapiens Chromosome 22q11.2 Cosmid Clone 19d3 In DGCR Region,
             complete sequence
          Length = 39706

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 215   cttgaagttgaaagaaatct 234
             ||||||||||||||||||||
Sbjct: 22978 cttgaagttgaaagaaatct 22997

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>dbj|AB221633.1| Mus musculus cDNA pooled tissues:(tissue_type=brain,dev_stage=8-12
            days
            neonate,strain=BALB/c),(tissue_type=testis,
            dev_stage=adult, strain=C57BL/6J), clone:V01Y034C09
          Length = 2349

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 83   ttacagaggtgcttggctct 102
            ||||||||||||||||||||
Sbjct: 2246 ttacagaggtgcttggctct 2265

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>ref|XM_579348.1| PREDICTED: Rattus norvegicus Sp4 transcription factor (Sp4), mRNA
          Length = 3459

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 83   ttacagaggtgcttggctct 102
            ||||||||||||||||||||
Sbjct: 2362 ttacagaggtgcttggctct 2381

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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 172     atggcgggcgtgatcgtcat 191
               ||||||||||||||||||||
Sbjct: 1281062 atggcgggcgtgatcgtcat 1281043

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>emb|AL808104.14| Mouse DNA sequence from clone RP23-30M20 on chromosome 2, complete
              sequence
          Length = 199494

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 592    tatgatactgtacttacatc 611
              ||||||||||||||||||||
Sbjct: 141508 tatgatactgtacttacatc 141489

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>emb|BX323818.8| Zebrafish DNA sequence from clone DKEY-48H7 in linkage group 4, complete
              sequence
          Length = 196712

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 86     cagaggtgcttggctctgggttgg 109
              |||| |||||||||||||||||||
Sbjct: 113937 cagatgtgcttggctctgggttgg 113914

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>gb|U62522.1|MMU62522 Mus musculus zinc finger transcription factor Sp4 mRNA, complete cds
          Length = 2678

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 83   ttacagaggtgcttggctct 102
            ||||||||||||||||||||
Sbjct: 2382 ttacagaggtgcttggctct 2401

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>emb|AL928637.7| Zebrafish DNA sequence from clone CH211-227I6, complete sequence
          Length = 163121

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 579   attccttccaaattatgata 598
             ||||||||||||||||||||
Sbjct: 30157 attccttccaaattatgata 30176

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>gb|U07610.1|SENDHF1B Rattus norvegicus Sprague-Dawley zinc finger protein (HF-1b) mRNA,
            complete cds
          Length = 3489

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 83   ttacagaggtgcttggctct 102
            ||||||||||||||||||||
Sbjct: 2393 ttacagaggtgcttggctct 2412


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,975,318
Number of Sequences: 3902068
Number of extensions: 4975318
Number of successful extensions: 88940
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 88812
Number of HSP's gapped (non-prelim): 127
length of query: 623
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 600
effective length of database: 17,143,297,704
effective search space: 10285978622400
effective search space used: 10285978622400
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result