ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal13f11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT017828.1| Zea mays clone EL01N0508G02.c mRNA sequence 317 2e-83
2dbj|AK099622.1| Oryza sativa (japonica cultivar-group) cDNA clon... 289 5e-75
3dbj|AK068132.1| Oryza sativa (japonica cultivar-group) cDNA clon... 281 1e-72
4ref|XM_476775.1| Oryza sativa (japonica cultivar-group), mRNA 278 2e-71
5dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 88 4e-14
6dbj|AP004670.4| Oryza sativa (japonica cultivar-group) genomic D... 88 4e-14
7dbj|AP006144.1| Lotus japonicus genomic DNA, chromosome 3, clone... 52 0.002
8gb|AC135861.5| Mus musculus BAC clone RP23-179J18 from 6, comple... 44 0.48
9gb|AC114917.2| Mus musculus chromosome 8 clone RP23-84K6, comple... 42 1.9
10emb|AL365361.12| Human DNA sequence from clone RP11-284N8 on chr... 42 1.9
11emb|AL157409.16| Human DNA sequence from clone RP5-823D19 on chr... 42 1.9
12emb|AL136528.11| Human DNA sequence from clone RP5-1092A11 on ch... 42 1.9
13gb|AC132516.4| Homo sapiens 3 BAC RP11-264A3 (Roswell Park Cance... 42 1.9
14gb|AC116301.8| Homo sapiens 3 BAC RP11-625D20 (Roswell Park Canc... 42 1.9
15ref|XM_776377.1| PREDICTED: Strongylocentrotus purpuratus simila... 42 1.9
16dbj|AB223866.1| Aspergillus oryzae cDNA, contig sequence: AoEST0707 42 1.9
17gb|AF477990.1| Mus musculus CDT1 protein gene, complete cds 42 1.9
18gb|AC008652.6| Homo sapiens chromosome 5 clone CTB-18F1, complet... 42 1.9
19gb|AC151999.5| Mus musculus BAC clone RP23-98D11 from chromosome... 42 1.9
20gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome 42 1.9
21emb|AL627392.12| Mouse DNA sequence from clone RP23-185I12 on ch... 42 1.9
22emb|AL136374.4| Human DNA sequence from clone RP1-244G5 on chrom... 42 1.9
23gb|M59869.1|HUMPPVB Human papillomavirus type 16 3' integration ... 42 1.9
24ref|XM_517692.1| PREDICTED: Pan troglodytes LOC461792 (LOC461792... 40 7.4
25gb|BC001800.1| Homo sapiens orthopedia homolog (Drosophila), mRN... 40 7.4
26gb|AC010064.7| Drosophila melanogaster 3L BAC RP98-22I16 (Roswel... 40 7.4
27gb|AC092110.9| Homo sapiens 12 BAC RP11-287J11 (Roswell Park Can... 40 7.4
28tpg|BK005034.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-gr... 40 7.4
29ref|NM_141005.1| Drosophila melanogaster CG3618-RA (CG3618), mRNA 40 7.4
30ref|NM_032109.2| Homo sapiens orthopedia homolog (Drosophila) (O... 40 7.4
31gb|AC108173.1| Homo sapiens chromosome 5 clone RP11-526L22, comp... 40 7.4
32gb|AY058558.1| Drosophila melanogaster LD24894 full length cDNA 40 7.4
33gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete g... 40 7.4
34dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.4
35dbj|AP003951.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.4
36gb|AE003592.3| Drosophila melanogaster chromosome 3L, section 73... 40 7.4
37emb|X16970.1|DMDRICI1 Drosophila melanogaster DRI class I gene f... 40 7.4 
>gb|BT017828.1| Zea mays clone EL01N0508G02.c mRNA sequence
          Length = 731

 Score =  317 bits (160), Expect = 2e-83
 Identities = 289/332 (87%)
 Strand = Plus / Plus

                                                                       
Query: 192 ggagatgaatgcccctgaccgctatgagcgcttcgtcgtgcctgagggcacaaagaaggt 251
           ||||||||||||||||||||| |||||||| ||||||||||| |||||||| ||||| ||
Sbjct: 194 ggagatgaatgcccctgaccgttatgagcgtttcgtcgtgccagagggcaccaagaaagt 253

                                                                       
Query: 252 gtccttcgagaaggatacaaagatcatgaatgctgcatctttcacaattgaacgtgaaga 311
           |||||  |||| ||||||||||||  ||||||||||||| |||||  | ||||| || ||
Sbjct: 254 gtcctatgagagggatacaaagattgtgaatgctgcatcattcactgtcgaacgcgagga 313

                                                                       
Query: 312 ccacaccatcggcaacatcctccgcatgcagttgcacagggacccaaatgttcactttgc 371
            |||||  | ||||| ||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct: 314 tcacactgtaggcaatatcctccgcatgcagttgcacagagacccaaatgttctctttgc 373

                                                                       
Query: 372 tggctataagctgcctcacccccttcagtacaagatcattgttaggatccatactgcaag 431
            || |||||||| |||||||| || |||||||||||||||||||||||||| ||  | ||
Sbjct: 374 cgggtataagctccctcacccactccagtacaagatcattgttaggatccacacaacgag 433

                                                                       
Query: 432 ccaatcctccccaacgcaggcgtatacccaagcaatcaatgatctagacaaggagctcga 491
           ||| |||||||| |||||||| || ||||| || ||||||||||||||||| ||||| ||
Sbjct: 434 ccagtcctccccgacgcaggcctacacccaggctatcaatgatctagacaaagagcttga 493

                                           
Query: 492 gaacctgaagcaagcttttgaggacgagaaga 523
           | |||| ||||||||||||||||| |||||||
Sbjct: 494 gtaccttaagcaagcttttgaggatgagaaga 525
to top
>dbj|AK099622.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013053F13, full
           insert sequence
          Length = 787

 Score =  289 bits (146), Expect = 5e-75
 Identities = 290/338 (85%)
 Strand = Plus / Plus

                                                                       
Query: 186 ttgattggagatgaatgcccctgaccgctatgagcgcttcgtcgtgcctgagggcacaaa 245
           |||||| ||||||||||| || |||||||| || ||||| || ||||||||||| || ||
Sbjct: 168 ttgattcgagatgaatgctcccgaccgctacgaacgctttgtggtgcctgagggaaccaa 227

                                                                       
Query: 246 gaaggtgtccttcgagaaggatacaaagatcatgaatgctgcatctttcacaattgaacg 305
           |||||| || |  |||  ||||||||||||  |||||||||  || ||||||||||| ||
Sbjct: 228 gaaggtatcatatgagcgggatacaaagattgtgaatgctgggtcattcacaattgagcg 287

                                                                       
Query: 306 tgaagaccacaccatcggcaacatcctccgcatgcagttgcacagggacccaaatgttca 365
           ||| ||||||||||| ||||||||||||||||||||| | |||||||||||||| || | 
Sbjct: 288 tgaggaccacaccattggcaacatcctccgcatgcagctccacagggacccaaacgtcct 347

                                                                       
Query: 366 ctttgctggctataagctgcctcacccccttcagtacaagatcattgttaggatccatac 425
           ||||||||| |||||||| ||||| |||||||||||||||||| |||| ||| |||||||
Sbjct: 348 ctttgctggttataagctccctcatccccttcagtacaagatccttgtcagggtccatac 407

                                                                       
Query: 426 tgcaagccaatcctccccaacgcaggcgtatacccaagcaatcaatgatctagacaagga 485
           ||||| ||| ||| |||| || || ||||| || || |||||||||||| ||||||||||
Sbjct: 408 tgcaaaccagtccacccctactcaagcgtacacacaggcaatcaatgatttagacaagga 467

                                                 
Query: 486 gctcgagaacctgaagcaagcttttgaggacgagaaga 523
           ||| ||||| || ||||||||||||||||| |||||||
Sbjct: 468 gcttgagaatctcaagcaagcttttgaggatgagaaga 505
to top
>dbj|AK068132.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013131J17, full
           insert sequence
          Length = 812

 Score =  281 bits (142), Expect = 1e-72
 Identities = 289/338 (85%)
 Strand = Plus / Plus

                                                                       
Query: 186 ttgattggagatgaatgcccctgaccgctatgagcgcttcgtcgtgcctgagggcacaaa 245
           |||||| ||||||||||| || |||||||| || ||||| || ||||||| ||| || ||
Sbjct: 170 ttgattcgagatgaatgctcccgaccgctacgaacgctttgtggtgcctgggggaaccaa 229

                                                                       
Query: 246 gaaggtgtccttcgagaaggatacaaagatcatgaatgctgcatctttcacaattgaacg 305
           |||||| || |  |||  ||||||||||||  |||||||||  || ||||||||||| ||
Sbjct: 230 gaaggtatcatatgagcgggatacaaagattgtgaatgctgggtcattcacaattgagcg 289

                                                                       
Query: 306 tgaagaccacaccatcggcaacatcctccgcatgcagttgcacagggacccaaatgttca 365
           ||| ||||||||||| ||||||||||||||||||||| | |||||||||||||| || | 
Sbjct: 290 tgaggaccacaccattggcaacatcctccgcatgcagctccacagggacccaaacgtcct 349

                                                                       
Query: 366 ctttgctggctataagctgcctcacccccttcagtacaagatcattgttaggatccatac 425
           ||||||||| |||||||| ||||| |||||||||||||||||| |||| ||| |||||||
Sbjct: 350 ctttgctggttataagctccctcatccccttcagtacaagatccttgtcagggtccatac 409

                                                                       
Query: 426 tgcaagccaatcctccccaacgcaggcgtatacccaagcaatcaatgatctagacaagga 485
           ||||| ||| ||| |||| || || ||||| || || |||||||||||| ||||||||||
Sbjct: 410 tgcaaaccagtccacccctactcaagcgtacacacaggcaatcaatgatttagacaagga 469

                                                 
Query: 486 gctcgagaacctgaagcaagcttttgaggacgagaaga 523
           ||| ||||| || ||||||||||||||||| |||||||
Sbjct: 470 gcttgagaatctcaagcaagcttttgaggatgagaaga 507
to top
>ref|XM_476775.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 363

 Score =  278 bits (140), Expect = 2e-71
 Identities = 281/328 (85%)
 Strand = Plus / Plus

                                                                       
Query: 196 atgaatgcccctgaccgctatgagcgcttcgtcgtgcctgagggcacaaagaaggtgtcc 255
           |||||||| || |||||||| || ||||| || ||||||||||| || |||||||| || 
Sbjct: 1   atgaatgctcccgaccgctacgaacgctttgtggtgcctgagggaaccaagaaggtatca 60

                                                                       
Query: 256 ttcgagaaggatacaaagatcatgaatgctgcatctttcacaattgaacgtgaagaccac 315
           |  |||  ||||||||||||  |||||||||  || ||||||||||| ||||| ||||||
Sbjct: 61  tatgagcgggatacaaagattgtgaatgctgggtcattcacaattgagcgtgaggaccac 120

                                                                       
Query: 316 accatcggcaacatcctccgcatgcagttgcacagggacccaaatgttcactttgctggc 375
           ||||| ||||||||||||||||||||| | |||||||||||||| || | ||||||||| 
Sbjct: 121 accattggcaacatcctccgcatgcagctccacagggacccaaacgtcctctttgctggt 180

                                                                       
Query: 376 tataagctgcctcacccccttcagtacaagatcattgttaggatccatactgcaagccaa 435
           |||||||| ||||| |||||||||||||||||| |||| ||| |||||||||||| ||| 
Sbjct: 181 tataagctccctcatccccttcagtacaagatccttgtcagggtccatactgcaaaccag 240

                                                                       
Query: 436 tcctccccaacgcaggcgtatacccaagcaatcaatgatctagacaaggagctcgagaac 495
           ||| |||| || || ||||| || || |||||||||||| ||||||||||||| ||||| 
Sbjct: 241 tccacccctactcaagcgtacacacaggcaatcaatgatttagacaaggagcttgagaat 300

                                       
Query: 496 ctgaagcaagcttttgaggacgagaaga 523
           || ||||||||||||||||| |||||||
Sbjct: 301 ctcaagcaagcttttgaggatgagaaga 328
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 68/76 (89%)
 Strand = Plus / Minus

                                                                           
Query: 264     ggatacaaagatcatgaatgctgcatctttcacaattgaacgtgaagaccacaccatcgg 323
               ||||||||||||  |||||||||  || ||||||||||| ||||| ||||||||||| ||
Sbjct: 3847218 ggatacaaagattgtgaatgctgggtcattcacaattgagcgtgaggaccacaccattgg 3847159

                               
Query: 324     caacatcctccgcatg 339
               ||||||||||||||||
Sbjct: 3847158 caacatcctccgcatg 3847143



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 83/96 (86%)
 Strand = Plus / Minus

                                                                           
Query: 419     tccatactgcaagccaatcctccccaacgcaggcgtatacccaagcaatcaatgatctag 478
               |||||||||||| ||| ||| |||| || || ||||| || || |||||||||||| |||
Sbjct: 3846898 tccatactgcaaaccagtccacccctactcaagcgtacacacaggcaatcaatgatttag 3846839

                                                   
Query: 479     acaaggagctcgagaacctgaagcaagcttttgagg 514
               |||||||||| ||||| || ||||||||||||||||
Sbjct: 3846838 acaaggagcttgagaatctcaagcaagcttttgagg 3846803



 Score = 79.8 bits (40), Expect = 9e-12
 Identities = 61/68 (89%)
 Strand = Plus / Minus

                                                                           
Query: 346     cacagggacccaaatgttcactttgctggctataagctgcctcacccccttcagtacaag 405
               |||||||||||||| || | ||||||||| |||||||| ||||| |||||||||||||||
Sbjct: 3847051 cacagggacccaaacgtcctctttgctggttataagctccctcatccccttcagtacaag 3846992

                       
Query: 406     atcattgt 413
               ||| ||||
Sbjct: 3846991 atccttgt 3846984



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 55/64 (85%)
 Strand = Plus / Minus

                                                                           
Query: 186     ttgattggagatgaatgcccctgaccgctatgagcgcttcgtcgtgcctgagggcacaaa 245
               |||||| ||||||||||| || |||||||| || ||||| || ||||||||||| || ||
Sbjct: 3849100 ttgattcgagatgaatgctcccgaccgctacgaacgctttgtggtgcctgagggaaccaa 3849041

                   
Query: 246     gaag 249
               ||||
Sbjct: 3849040 gaag 3849037
to top
>dbj|AP004670.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0496D04
          Length = 197358

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 68/76 (89%)
 Strand = Plus / Minus

                                                                         
Query: 264   ggatacaaagatcatgaatgctgcatctttcacaattgaacgtgaagaccacaccatcgg 323
             ||||||||||||  |||||||||  || ||||||||||| ||||| ||||||||||| ||
Sbjct: 86330 ggatacaaagattgtgaatgctgggtcattcacaattgagcgtgaggaccacaccattgg 86271

                             
Query: 324   caacatcctccgcatg 339
             ||||||||||||||||
Sbjct: 86270 caacatcctccgcatg 86255



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 83/96 (86%)
 Strand = Plus / Minus

                                                                         
Query: 419   tccatactgcaagccaatcctccccaacgcaggcgtatacccaagcaatcaatgatctag 478
             |||||||||||| ||| ||| |||| || || ||||| || || |||||||||||| |||
Sbjct: 86010 tccatactgcaaaccagtccacccctactcaagcgtacacacaggcaatcaatgatttag 85951

                                                 
Query: 479   acaaggagctcgagaacctgaagcaagcttttgagg 514
             |||||||||| ||||| || ||||||||||||||||
Sbjct: 85950 acaaggagcttgagaatctcaagcaagcttttgagg 85915



 Score = 79.8 bits (40), Expect = 9e-12
 Identities = 61/68 (89%)
 Strand = Plus / Minus

                                                                         
Query: 346   cacagggacccaaatgttcactttgctggctataagctgcctcacccccttcagtacaag 405
             |||||||||||||| || | ||||||||| |||||||| ||||| |||||||||||||||
Sbjct: 86163 cacagggacccaaacgtcctctttgctggttataagctccctcatccccttcagtacaag 86104

                     
Query: 406   atcattgt 413
             ||| ||||
Sbjct: 86103 atccttgt 86096



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 55/64 (85%)
 Strand = Plus / Minus

                                                                         
Query: 186   ttgattggagatgaatgcccctgaccgctatgagcgcttcgtcgtgcctgagggcacaaa 245
             |||||| ||||||||||| || |||||||| || ||||| || ||||||||||| || ||
Sbjct: 88212 ttgattcgagatgaatgctcccgaccgctacgaacgctttgtggtgcctgagggaaccaa 88153

                 
Query: 246   gaag 249
             ||||
Sbjct: 88152 gaag 88149
to top
>dbj|AP006144.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT23P21, TM0261,
             complete sequence
          Length = 121882

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 65/78 (83%)
 Strand = Plus / Plus

                                                                         
Query: 258   cgagaaggatacaaagatcatgaatgctgcatctttcacaattgaacgtgaagaccacac 317
             ||||| ||| || |||||||| ||||| ||||| ||||| || || || || || |||||
Sbjct: 40351 cgagagggacaccaagatcatcaatgcggcatcgttcaccatagagcgagaggatcacac 40410

                               
Query: 318   catcggcaacatcctccg 335
             |||||| |||||||||||
Sbjct: 40411 catcggaaacatcctccg 40428
to top
>gb|AC135861.5| Mus musculus BAC clone RP23-179J18 from 6, complete sequence
          Length = 202869

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 149   ggcatccacagtagagcaaacaagaa 174
             |||||||||||||||| |||||||||
Sbjct: 79222 ggcatccacagtagaggaaacaagaa 79197
to top
>gb|AC114917.2| Mus musculus chromosome 8 clone RP23-84K6, complete sequence
          Length = 181442

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 233    ctgagggcacaaagaaggtgt 253
              |||||||||||||||||||||
Sbjct: 170512 ctgagggcacaaagaaggtgt 170532
to top
>emb|AL365361.12| Human DNA sequence from clone RP11-284N8 on chromosome 1 Contains the
              KCNA2 gene for a potassium voltage-gated channel from the
              shaker-related subfamily member 2, the KCNA3 gene for a
              potassium voltage-gated channel from the shaker-related
              subfamily member 3 and two CpG islands, complete sequence
          Length = 193182

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 4      cccagcagagcctccctccca 24
              |||||||||||||||||||||
Sbjct: 184981 cccagcagagcctccctccca 185001
to top
>emb|AL157409.16| Human DNA sequence from clone RP5-823D19 on chromosome 1q42.11-43
             Contains the 5' end of the SIPA1L2 gene for signal-induced
             proliferation-associated 1 like 2, complete sequence
          Length = 143798

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 336   catgcagttgcacagggaccc 356
             |||||||||||||||||||||
Sbjct: 22887 catgcagttgcacagggaccc 22867
to top
>emb|AL136528.11| Human DNA sequence from clone RP5-1092A11 on chromosome 1p36.2-36.33
             Contains the 5' end of the gene for a novel protein
             (FLJ32825), a novel gene (KIAA0495), two novel genes, the
             TP73 gene for tumor protein p73, the 5' end of the WDR8
             gene for WD repeat domain 8 and five CpG islands, complete
             sequence
          Length = 138941

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 41    ccagcatcgcctccctccctt 61
             |||||||||||||||||||||
Sbjct: 84852 ccagcatcgcctccctccctt 84872
to top
>gb|AC132516.4| Homo sapiens 3 BAC RP11-264A3 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 66262

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 337   atgcagttgcacagggaccca 357
             |||||||||||||||||||||
Sbjct: 57058 atgcagttgcacagggaccca 57078
to top
>gb|AC116301.8| Homo sapiens 3 BAC RP11-625D20 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 62190

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 337   atgcagttgcacagggaccca 357
             |||||||||||||||||||||
Sbjct: 52987 atgcagttgcacagggaccca 53007
to top
>ref|XM_776377.1| PREDICTED: Strongylocentrotus purpuratus similar to
           anaphase-promoting complex subunit 7 (LOC576029), mRNA
          Length = 738

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 407 tcattgttaggatccatactg 427
           |||||||||||||||||||||
Sbjct: 503 tcattgttaggatccatactg 483
to top
>dbj|AB223866.1| Aspergillus oryzae cDNA, contig sequence: AoEST0707
          Length = 1154

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 194 agatgaatgcccctgaccgctatga 218
           ||||||||||||||||||| |||||
Sbjct: 390 agatgaatgcccctgaccgttatga 414
to top
>gb|AF477990.1| Mus musculus CDT1 protein gene, complete cds
          Length = 7485

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 233  ctgagggcacaaagaaggtgt 253
            |||||||||||||||||||||
Sbjct: 5689 ctgagggcacaaagaaggtgt 5709
to top
>gb|AC008652.6| Homo sapiens chromosome 5 clone CTB-18F1, complete sequence
          Length = 171949

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 161   agagcaaacaagaaggagcca 181
             |||||||||||||||||||||
Sbjct: 98002 agagcaaacaagaaggagcca 97982
to top
>gb|AC151999.5| Mus musculus BAC clone RP23-98D11 from chromosome 8, complete sequence
          Length = 229414

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 233   ctgagggcacaaagaaggtgt 253
             |||||||||||||||||||||
Sbjct: 99695 ctgagggcacaaagaaggtgt 99715
to top
>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome
          Length = 7215267

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 72      tctcgcccagcaacgccgccg 92
               |||||||||||||||||||||
Sbjct: 6218047 tctcgcccagcaacgccgccg 6218067
to top
>emb|AL627392.12| Mouse DNA sequence from clone RP23-185I12 on chromosome 4, complete
              sequence
          Length = 182520

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 270    aaagatcatgaatgctgcatctttc 294
              |||||||||||||||||||| ||||
Sbjct: 115137 aaagatcatgaatgctgcatttttc 115113
to top
>emb|AL136374.4| Human DNA sequence from clone RP1-244G5 on chromosome 1q24.3-25.3,
             complete sequence
          Length = 119853

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 4     cccagcagagcctccctccca 24
             |||||||||||||||||||||
Sbjct: 29733 cccagcagagcctccctccca 29753
to top
>gb|M59869.1|HUMPPVB Human papillomavirus type 16 3' integration site
          Length = 146

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 41  ccagcatcgcctccctccctt 61
           |||||||||||||||||||||
Sbjct: 121 ccagcatcgcctccctccctt 101
to top
>ref|XM_517692.1| PREDICTED: Pan troglodytes LOC461792 (LOC461792), mRNA
          Length = 1191

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 39  caccagcatcgcctccctcc 58
           ||||||||||||||||||||
Sbjct: 790 caccagcatcgcctccctcc 809
to top
>gb|BC001800.1| Homo sapiens orthopedia homolog (Drosophila), mRNA (cDNA clone
            MGC:3161 IMAGE:3354882), complete cds
          Length = 2702

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 39   caccagcatcgcctccctcc 58
            ||||||||||||||||||||
Sbjct: 1063 caccagcatcgcctccctcc 1082
to top
>gb|AC010064.7| Drosophila melanogaster 3L BAC RP98-22I16 (Roswell Park Cancer
             Institute Drosophila BAC library) complete sequence
          Length = 199396

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 132   gggcttggagctgctccggc 151
             ||||||||||||||||||||
Sbjct: 46511 gggcttggagctgctccggc 46530
to top
>gb|AC092110.9| Homo sapiens 12 BAC RP11-287J11 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 181207

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 262   aaggatacaaagatcatgaa 281
             ||||||||||||||||||||
Sbjct: 23155 aaggatacaaagatcatgaa 23174
to top
>tpg|BK005034.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) WRKY
           transcription factor 31 (WRKY31) gene, complete cds
          Length = 1161

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 73  ctcgcccagcaacgccgccg 92
           ||||||||||||||||||||
Sbjct: 132 ctcgcccagcaacgccgccg 113
to top
>ref|NM_141005.1| Drosophila melanogaster CG3618-RA (CG3618), mRNA
          Length = 2586

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 132 gggcttggagctgctccggc 151
           ||||||||||||||||||||
Sbjct: 326 gggcttggagctgctccggc 307
to top
>ref|NM_032109.2| Homo sapiens orthopedia homolog (Drosophila) (OTP), mRNA
          Length = 2702

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 39   caccagcatcgcctccctcc 58
            ||||||||||||||||||||
Sbjct: 1063 caccagcatcgcctccctcc 1082
to top
>gb|AC108173.1| Homo sapiens chromosome 5 clone RP11-526L22, complete sequence
          Length = 174346

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 39    caccagcatcgcctccctcc 58
             ||||||||||||||||||||
Sbjct: 53341 caccagcatcgcctccctcc 53360
to top
>gb|AY058558.1| Drosophila melanogaster LD24894 full length cDNA
          Length = 2506

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 132 gggcttggagctgctccggc 151
           ||||||||||||||||||||
Sbjct: 228 gggcttggagctgctccggc 209
to top
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome
          Length = 2909809

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 74     tcgcccagcaacgccgccga 93
              ||||||||||||||||||||
Sbjct: 382710 tcgcccagcaacgccgccga 382691
to top
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 73       ctcgcccagcaacgccgccg 92
                ||||||||||||||||||||
Sbjct: 17698808 ctcgcccagcaacgccgccg 17698827
to top
>dbj|AP003951.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OJ1288_C01
          Length = 111223

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 73    ctcgcccagcaacgccgccg 92
             ||||||||||||||||||||
Sbjct: 76706 ctcgcccagcaacgccgccg 76725
to top
>gb|AE003592.3| Drosophila melanogaster chromosome 3L, section 73 of 83 of the complete
              sequence
          Length = 323816

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 132    gggcttggagctgctccggc 151
              ||||||||||||||||||||
Sbjct: 186819 gggcttggagctgctccggc 186838
to top
>emb|X16970.1|DMDRICI1 Drosophila melanogaster DRI class I gene for type I regulatory
           subunit of cAMP-dependent protein kinase, exon 1 (and
           joined CDS)
          Length = 1707

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 132 gggcttggagctgctccggc 151
           ||||||||||||||||||||
Sbjct: 432 gggcttggagctgctccggc 451


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,464,095
Number of Sequences: 3902068
Number of extensions: 4464095
Number of successful extensions: 77119
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 76988
Number of HSP's gapped (non-prelim): 128
length of query: 549
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 526
effective length of database: 17,143,297,704
effective search space: 9017374592304
effective search space used: 9017374592304
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top