>PSBR_HORVU (Q40070) Photosystem II 10 kDa polypeptide, chloroplast precursor|
          Length = 138

 Score =  197 bits (502), Expect = 9e-51
 Identities = 97/118 (82%), Positives = 97/118 (82%)
 Frame = +2

Query: 38  MSACVMXXXXXXXXXXXXXQRSKLGGVRPSARPSLVIXXXXXXXXQTAQPYGPGGGVAFK 217
           MSACVM             QRSKLGGVRPSARPSLVI        QTAQPYGPGGGVAFK
Sbjct: 1   MSACVMASLALKPSSSPLLQRSKLGGVRPSARPSLVIVAKKAKKVQTAQPYGPGGGVAFK 60

Query: 218 EGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVYVGGKTGLFLWAVT 391
           EGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVYVGGKTGLFLWAVT
Sbjct: 61  EGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVYVGGKTGLFLWAVT 118

>PSBR_SOLTU (P06183) Photosystem II 10 kDa polypeptide, chloroplast precursor|
           (Light-inducible tissue-specific ST-LS1 protein)
          Length = 138

 Score =  119 bits (298), Expect = 4e-27
 Identities = 53/73 (72%), Positives = 61/73 (83%)
 Frame = +2

Query: 173 QTAQPYGPGGGVAFKEGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVY 352
           +T +PYG  G +A ++GVDASGR  KGKGVYQ+ DKYGANVDGYSPIY  +EWSPSGDVY
Sbjct: 46  KTDKPYGINGSMALRDGVDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVY 105

Query: 353 VGGKTGLFLWAVT 391
           VGG TGL +WAVT
Sbjct: 106 VGGTTGLAIWAVT 118

>PSBR_LYCES (Q40163) Photosystem II 10 kDa polypeptide, chloroplast precursor|
          Length = 138

 Score =  119 bits (298), Expect = 4e-27
 Identities = 53/73 (72%), Positives = 61/73 (83%)
 Frame = +2

Query: 173 QTAQPYGPGGGVAFKEGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVY 352
           +T +PYG  G +A ++GVDASGR  KGKGVYQ+ DKYGANVDGYSPIY  +EWSPSGDVY
Sbjct: 46  KTDKPYGINGSMALRDGVDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVY 105

Query: 353 VGGKTGLFLWAVT 391
           VGG TGL +WAVT
Sbjct: 106 VGGTTGLAIWAVT 118

>PSBR_TOBAC (Q40519) Photosystem II 10 kDa polypeptide, chloroplast precursor|
           (PII10)
          Length = 136

 Score =  118 bits (295), Expect = 9e-27
 Identities = 52/73 (71%), Positives = 61/73 (83%)
 Frame = +2

Query: 173 QTAQPYGPGGGVAFKEGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVY 352
           +T +PYG  G ++ ++GVDASGR  KGKGVYQF DKYGANVDGYSPIY  ++WSPSGDVY
Sbjct: 44  KTDKPYGINGSMSLRDGVDASGRKQKGKGVYQFVDKYGANVDGYSPIYNTDDWSPSGDVY 103

Query: 353 VGGKTGLFLWAVT 391
           VGG TGL +WAVT
Sbjct: 104 VGGTTGLAIWAVT 116

>PSBR_SPIOL (P10690) Photosystem II 10 kDa polypeptide, chloroplast precursor|
          Length = 140

 Score =  114 bits (284), Expect = 2e-25
 Identities = 56/120 (46%), Positives = 71/120 (59%), Gaps = 2/120 (1%)
 Frame = +2

Query: 38  MSACVMXXXXXXXXXXXXXQRSKLGGVRPSARPS--LVIXXXXXXXXQTAQPYGPGGGVA 211
           M+  VM              +S + G+   +R S    +        +  +P G GGG+ 
Sbjct: 1   MATSVMSSLSLKPSSFGVDTKSAVKGLPSLSRSSASFTVRASGVKKIKVDKPLGIGGGMK 60

Query: 212 FKEGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVYVGGKTGLFLWAVT 391
            ++GVD+SGR   GKGVYQF DKYGANVDGYSPIY  EEW+P+GDVY GG TGL +WAVT
Sbjct: 61  LRDGVDSSGRKPTGKGVYQFVDKYGANVDGYSPIYNEEEWAPTGDVYAGGTTGLLIWAVT 120

>PSBR_ARATH (P27202) Photosystem II 10 kDa polypeptide, chloroplast precursor|
          Length = 140

 Score =  112 bits (279), Expect = 6e-25
 Identities = 59/121 (48%), Positives = 73/121 (60%), Gaps = 3/121 (2%)
 Frame = +2

Query: 38  MSACVMXXXXXXXXXXXXXQRSKLGGVRPS---ARPSLVIXXXXXXXXQTAQPYGPGGGV 208
           M+A VM             +++   G+ PS   ARPS  I        +T +P+G  G +
Sbjct: 1   MAASVMLSSVTLKPAGFTVEKTAARGL-PSLTRARPSFKIVASGVKKIKTDKPFGINGSM 59

Query: 209 AFKEGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVYVGGKTGLFLWAV 388
             ++GVDASGR  KG GVY++ DKYGANVDGYSPIY   EWS SGDVY GG TGL +WAV
Sbjct: 60  DLRDGVDASGRKGKGYGVYKYVDKYGANVDGYSPIYNENEWSASGDVYKGGVTGLAIWAV 119

Query: 389 T 391
           T
Sbjct: 120 T 120

>PSBR_BRACM (P49108) Photosystem II 10 kDa polypeptide, chloroplast precursor|
          Length = 141

 Score =  107 bits (267), Expect = 2e-23
 Identities = 48/73 (65%), Positives = 57/73 (78%)
 Frame = +2

Query: 173 QTAQPYGPGGGVAFKEGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVY 352
           +T +P+G  G +  ++GVDASGR  KG GVY+F DKYGANVDGYSPIY  +EWS SGDVY
Sbjct: 49  KTDKPFGVNGSMDLRDGVDASGRKGKGYGVYKFVDKYGANVDGYSPIYNEDEWSASGDVY 108

Query: 353 VGGKTGLFLWAVT 391
            GG TGL +WAVT
Sbjct: 109 KGGVTGLAIWAVT 121

>AFSK_STRCO (P54741) Serine/threonine protein kinase afsK (EC 2.7.11.1)|
          Length = 799

 Score = 32.0 bits (71), Expect = 0.82
 Identities = 31/103 (30%), Positives = 40/103 (38%), Gaps = 9/103 (8%)
 Frame = -1

Query: 417 APPSRIPA---RVTAQRNSPVFPPT*TSPLGD-----HSSGVYIGLYPSTFAPYLSANW* 262
           APP+ +PA    V A    PV  P    P+G            +   P   A  L+A+W 
Sbjct: 341 APPAHVPAVPAPVGAPDGGPVRLPGAAVPIGPGPRVADMRAAAVAAPPPESA--LAASWS 398

Query: 261 TPFPLATLPDASTPSLNATPPPG-P*GWAVWTFFAFLATMTND 136
            P P     D + P+    PP   P GW  W F      M+ND
Sbjct: 399 RPRPGVNGADPAVPAPAPAPPEASPAGWRPWRF-----RMSND 436

>IF2_CORGL (Q8NP40) Translation initiation factor IF-2|
          Length = 1004

 Score = 30.4 bits (67), Expect = 2.4
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +2

Query: 200 GGVAFKEGVDASGRVAKGKGVYQFADKYGAN 292
           GGV   +G  A+ R+A+G  +  FADK GA+
Sbjct: 400 GGVRLPDGKGATIRLARGASLADFADKIGAD 430

>ALB2_PEA (P08688) Albumin-2 (PA2)|
          Length = 231

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 203 GVAFKEGVDASGRVAKGKGVYQFADKYGANVD 298
           G  F+ G+DA+ R  +GK VY F     A +D
Sbjct: 114 GTVFENGIDAAYRSTRGKEVYLFKGDQYARID 145

>RPB1_CRIGR (P11414) DNA-directed RNA polymerase II largest subunit (EC|
           2.7.7.6) (RPB1) (Fragment)
          Length = 467

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +2

Query: 221 GVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPS 340
           G+ A+GR     G   F+    ++  G+SP Y+P  WSP+
Sbjct: 27  GLGAAGRSGMTPGAAGFSPSAASDASGFSPGYSP-AWSPT 65

>METX_RALSO (Q8Y3F3) Homoserine O-acetyltransferase (EC 2.3.1.31) (Homoserine|
           O-trans-acetylase) (Homoserine transacetylase) (HTA)
          Length = 403

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +2

Query: 173 QTAQPYGPGGGVAFKEG-VDASGRVAKGKGVYQFADKYGANVDG 301
           QT QPYG    V   E  V+A  RVA   G+ QFA   G ++ G
Sbjct: 138 QTGQPYGARFPVVTVEDWVNAQARVADRFGIRQFAAVMGGSLGG 181

>NTHL1_HUMAN (P78549) Endonuclease III-like protein 1 (EC 4.2.99.18)|
          Length = 312

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
 Frame = +1

Query: 220 RRRCVWKGS---QGEGCLPVCRQVWSKC*WVQPYIHTRRVVSKWRRLCWRKDGAVS-LGS 387
           R R  ++GS   +GEG  P+   VW    W Q  ++ R + +K       KD  V  LG+
Sbjct: 63  RLRVAYEGSDSEKGEGAEPLKVPVWEPQDWQQQLVNIRAMRNK-------KDAPVDHLGT 115

Query: 388 DSCWNSA 408
           + C++S+
Sbjct: 116 EHCYDSS 122

>CELR1_MOUSE (O35161) Cadherin EGF LAG seven-pass G-type receptor 1 precursor|
          Length = 3034

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 16/51 (31%), Positives = 22/51 (43%)
 Frame = +1

Query: 142  GHSGQEGEEGPDCPTLRAWWWSGVQGRRRCVWKGSQGEGCLPVCRQVWSKC 294
            GH GQ  E   D P  + WW + V G   C    +  +G  P C +   +C
Sbjct: 1954 GHYGQYCENKVDLPCPKGWWGNPVCGPCHC----AVSQGFDPDCNKTNGQC 2000

>TF7L1_MOUSE (Q9Z1J1) Transcription factor 7-like 1 (HMG box transcription|
           factor 3) (TCF-3) (mTCF-3)
          Length = 584

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
 Frame = -1

Query: 372 SPVFPPT*TSPLGDHSSGVYIGLYPSTFAPYL----SANW*TPFPLATLPDASTPSLNAT 205
           SP  PPT  SP  D  +G+    +PS  +PY      A    P PL  L       + + 
Sbjct: 200 SPASPPTHLSPEIDPKTGIPRPPHPSELSPYYPLSPGAVGQIPHPLGWLVPQQGQPMYSL 259

Query: 204 PPPG 193
           PP G
Sbjct: 260 PPGG 263

>BARH1_DROAN (P22544) Homeobox protein B-H1 (Homeobox BarH1 protein)|
          Length = 606

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 25/77 (32%), Positives = 31/77 (40%), Gaps = 3/77 (3%)
 Frame = -1

Query: 414 PPSRIPARVTAQRNSPV---FPPT*TSPLGDHSSGVYIGLYPSTFAPYLSANW*TPFPLA 244
           PP    A  T    SP+     P   SP G        G+ P   +   SA+   P PLA
Sbjct: 519 PPPSSAAAATGGSPSPIGGLIKPLAGSPTG--------GMPPHHPSRPDSASPPLPLPLA 570

Query: 243 TLPDASTPSLNATPPPG 193
             P   +P+LN   PPG
Sbjct: 571 RPPSTPSPTLNPGSPPG 587

>GP112_HUMAN (Q8IZF6) Probable G-protein coupled receptor 112|
          Length = 2799

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -1

Query: 402  IPARVTAQRNSPVFPPT*TSPLGDHSSGVYIGLYPSTFAPYLSA 271
            +P  + A   +P    T  SPL   S+G    +  +TF+P+LSA
Sbjct: 1595 VPTTIMAGIVTPFVGTTAFSPLSSKSTGAISSIPKTTFSPFLSA 1638

>GFI1_DROME (Q9N658) Zinc finger protein sens (Protein senseless)|
          Length = 541

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -2

Query: 434 YCRQEEHRPAEFQQESLPRETAPSFLQHKRRHLETT 327
           Y R +  +P + QQ+ L  +  P   QH+++H ++T
Sbjct: 351 YMRNQHQQPQQQQQQQLHHQQQPQQHQHQQQHPDST 386

>BCHZ_RHOGE (Q9JPB9) Chlorophyllide reductase subunit Z (EC 1.18.-.-) (Chlorin|
           reductase subunit Z)
          Length = 487

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = -3

Query: 289 CSILVGKLVNTLPLGYPSRRIDAFLERHSTTRP 191
           C+ L   L N LPLG    RIDA   R   +RP
Sbjct: 396 CNALFDALFNILPLGTELDRIDATPSRRGDSRP 428

>ZN440_HUMAN (Q8IYI8) Zinc finger protein 440|
          Length = 595

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 15/80 (18%)
 Frame = -2

Query: 413 RPAEFQQESLPRETAPSFLQHKRRHLETTLLVC--------------I*GCTHQHL-LHT 279
           +P E+Q+      +  S+ +H+R H+      C              I   TH    L+ 
Sbjct: 254 KPYEYQECGKAFHSPRSYRRHERIHMGEKAYQCKECGKAFTCPRYVRIHERTHSRKNLYE 313

Query: 278 CRQTGKHPSPWLPFQTHRRL 219
           C+Q GK  S    FQTH RL
Sbjct: 314 CKQCGKALSSLTSFQTHVRL 333

>SCRL2_ORYSA (Q5QNA6) SCAR-like protein 2|
          Length = 1334

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 18/64 (28%), Positives = 25/64 (39%)
 Frame = -1

Query: 300 PSTFAPYLSANW*TPFPLATLPDASTPSLNATPPPGP*GWAVWTFFAFLATMTNDGLADG 121
           P    P LS     P P  +    +TP  N    PGP   +     A++ T+ N  L D 
Sbjct: 516 PDISEPVLSGYTANPHPEVSAIATNTPVSNTEDAPGPLEISESASRAYIITLPNQSLPDS 575

Query: 120 RTPP 109
           +  P
Sbjct: 576 KEIP 579

>RTCA_AERPE (Q9YES0) Probable RNA 3'-terminal phosphate cyclase (EC 6.5.1.4)|
           (RNA-3'-phosphate cyclase) (RNA cyclase)
          Length = 353

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 299 GYSPIYTPEEWSPSGDVYVGGKTGLFLWAV 388
           G  PI   E + P  D ++G  TG+ +WAV
Sbjct: 216 GVDPIVEIEAYKPHRDPHLGPGTGVLVWAV 245

>MURI_RHILO (Q98NP9) Glutamate racemase (EC 5.1.1.3)|
          Length = 262

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = -2

Query: 395 QESLPRETAPSFLQHKRRHLETTLLVCI*GCTH-QHLLHTCRQTGKHPSPWL 243
           +E++  E AP F++H+    +  +L     CTH   L++  R+T   P  W+
Sbjct: 163 EEAVRAEIAPCFMEHEGLRTDIVVL----ACTHYPFLVNRMRKTAPWPVDWI 210


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,983,869
Number of Sequences: 219361
Number of extensions: 1722080
Number of successful extensions: 6051
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 5485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6026
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3072927439
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)