ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal13e21 |
|---|---|
| Clone Library Name | barley_pub |
>TERF2_HUMAN (Q15554) Telomeric repeat-binding factor 2 (TTAGGG repeat-binding| factor 2) (Telomeric DNA-binding protein) Length = 500 Score = 33.9 bits (76), Expect = 0.36 Identities = 16/40 (40%), Positives = 24/40 (60%) Frame = +2 Query: 377 SSANRERKKGVPWTEEEHRRFLLGLQKLGKGDWRGISRNF 496 S+ N +K+ WT EE G+QK G+G+W IS+N+ Sbjct: 440 STTNITKKQ--KWTVEESEWVKAGVQKYGEGNWAAISKNY 477
>LAMB3_MOUSE (Q61087) Laminin beta-3 chain precursor (Laminin 5 beta 3) (Kalinin| B1 chain) Length = 1168 Score = 33.5 bits (75), Expect = 0.47 Identities = 19/60 (31%), Positives = 26/60 (43%) Frame = +2 Query: 53 TTLRFSSQPTSPLPFRRATPAGALAAPGMTRRCSHCSYNGHNSRTCPNRGVKIFGVRLTD 232 T LR + +P+P R + P A A R C +GH R PN G VR+ + Sbjct: 215 TNLRVNFTKLAPVPQRGSYPPSAYFAVSQLRLQGSCFCHGHADRCAPNPGGSTTAVRVNN 274
>RERE_HUMAN (Q9P2R6) Arginine-glutamic acid dipeptide repeats protein| (Atrophin-1-like protein) (Atrophin-1-related protein) Length = 1566 Score = 29.3 bits (64), Expect(2) = 1.1 Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 6/33 (18%) Frame = +2 Query: 398 KKGVP------WTEEEHRRFLLGLQKLGKGDWR 478 KK VP WTE+E +RF+ GL++ GK +R Sbjct: 385 KKPVPKLIEKCWTEDEVKRFVKGLRQYGKNFFR 417 Score = 21.6 bits (44), Expect(2) = 1.1 Identities = 13/42 (30%), Positives = 19/42 (45%) Frame = +3 Query: 465 KVIGEESLVIFVVSRTPTQVASHAQKYFIRQANMSRRKRRSS 590 K GE + +TP +S A + RQA R K R++ Sbjct: 426 KETGELITFYYYWKKTPEAASSRAHRRHRRQAVFRRIKTRTA 467
>RERE_RAT (Q62901) Arginine-glutamic acid dipeptide repeats protein| (Atrophin-1-related protein) Length = 1559 Score = 29.3 bits (64), Expect(2) = 1.1 Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 6/33 (18%) Frame = +2 Query: 398 KKGVP------WTEEEHRRFLLGLQKLGKGDWR 478 KK VP WTE+E +RF+ GL++ GK +R Sbjct: 384 KKPVPKLIEKCWTEDEVKRFVKGLRQYGKNFFR 416 Score = 21.6 bits (44), Expect(2) = 1.1 Identities = 13/42 (30%), Positives = 19/42 (45%) Frame = +3 Query: 465 KVIGEESLVIFVVSRTPTQVASHAQKYFIRQANMSRRKRRSS 590 K GE + +TP +S A + RQA R K R++ Sbjct: 425 KETGELITFYYYWKKTPEAASSRAHRRHRRQAVFRRIKTRTA 466
>RERE_MOUSE (Q80TZ9) Arginine-glutamic acid dipeptide repeats protein| (Atrophin-2) Length = 1558 Score = 29.3 bits (64), Expect(2) = 1.1 Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 6/33 (18%) Frame = +2 Query: 398 KKGVP------WTEEEHRRFLLGLQKLGKGDWR 478 KK VP WTE+E +RF+ GL++ GK +R Sbjct: 385 KKPVPKLIEKCWTEDEVKRFVKGLRQYGKNFFR 417 Score = 21.6 bits (44), Expect(2) = 1.1 Identities = 13/42 (30%), Positives = 19/42 (45%) Frame = +3 Query: 465 KVIGEESLVIFVVSRTPTQVASHAQKYFIRQANMSRRKRRSS 590 K GE + +TP +S A + RQA R K R++ Sbjct: 426 KETGELITFYYYWKKTPEAASSRAHRRHRRQAVFRRIKTRTA 467
>TERF2_MOUSE (O35144) Telomeric repeat-binding factor 2 (TTAGGG repeat-binding| factor 2) (Telomeric DNA-binding protein) Length = 495 Score = 31.6 bits (70), Expect = 1.8 Identities = 16/41 (39%), Positives = 25/41 (60%) Frame = +2 Query: 374 SSSANRERKKGVPWTEEEHRRFLLGLQKLGKGDWRGISRNF 496 SSS R++K WT EE G++K G+G+W IS+++ Sbjct: 436 SSSLTRKQK----WTIEESEWVKDGVRKYGEGNWAAISKSY 472
>MYB21_ARATH (Q9LK95) Transcription factor MYB21 (Myb-related protein 21)| (AtMYB21) (Myb homolog 3) (AtMyb3) Length = 226 Score = 31.6 bits (70), Expect = 1.8 Identities = 21/53 (39%), Positives = 28/53 (52%) Frame = +2 Query: 377 SSANRERKKGVPWTEEEHRRFLLGLQKLGKGDWRGISRNFCGLKNTYSSSKSC 535 SSA E +KG PWT EE + + G G W ++++ GLK T KSC Sbjct: 14 SSAEAEVRKG-PWTMEEDLILINYIANHGDGVWNSLAKS-AGLKRT---GKSC 61
>LMO6_HUMAN (O43900) LIM domain only protein 6 (Triple LIM domain protein 6)| Length = 615 Score = 27.7 bits (60), Expect(2) = 1.9 Identities = 14/39 (35%), Positives = 20/39 (51%) Frame = +2 Query: 71 SQPTSPLPFRRATPAGALAAPGMTRRCSHCSYNGHNSRT 187 S+PT+P P RR+ AG + AP S + G + T Sbjct: 370 SEPTAPGPSRRSWSAGPVTAPLAASTASFSAVKGASETT 408 Score = 22.3 bits (46), Expect(2) = 1.9 Identities = 9/19 (47%), Positives = 12/19 (63%) Frame = +1 Query: 190 PQPRGQDLRGAPHRWIHPQ 246 P+ + LRGAPHR P+ Sbjct: 422 PEEPSRFLRGAPHRHSMPE 440
>HFW1_DROME (Q9W568) Protein halfway precursor (Protein singed wings)| Length = 611 Score = 31.2 bits (69), Expect = 2.3 Identities = 12/30 (40%), Positives = 14/30 (46%) Frame = +1 Query: 169 RPQLADVPQPRGQDLRGAPHRWIHPQERQH 258 RP++A P P PH HPQ R H Sbjct: 23 RPEIAHTPDPAALGEESTPHAHAHPQARHH 52
>GAM1_ORYSA (P93417) Transcription factor GAMYB (OsGAMyb)| Length = 553 Score = 31.2 bits (69), Expect = 2.3 Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 6/79 (7%) Frame = +2 Query: 317 DVGHDAAAEGYASDDFVQGSSSANRER------KKGVPWTEEEHRRFLLGLQKLGKGDWR 478 D+ H + +DD GSS + R KKG PWT E + ++K G+G+W Sbjct: 11 DMIHQEQMDSPVADD---GSSGGSPHRGGGPPLKKG-PWTSAEDAILVDYVKKHGEGNWN 66 Query: 479 GISRNFCGLKNTYSSSKSC 535 + +N + KSC Sbjct: 67 AVQKN----TGLFRCGKSC 81
>MYB4_ORYSA (Q7XBH4) Myb-related protein Myb4 (OsMyb4) (Transcription factor| RLTR1) Length = 257 Score = 31.2 bits (69), Expect = 2.3 Identities = 13/31 (41%), Positives = 20/31 (64%) Frame = +2 Query: 398 KKGVPWTEEEHRRFLLGLQKLGKGDWRGISR 490 KKG PWT EE + + +Q+ G G+WR + + Sbjct: 13 KKG-PWTPEEDKVLVAHIQRHGHGNWRALPK 42
>YD3A_SCHPO (Q10274) Hypothetical protein C13G7.10 in chromosome I| Length = 390 Score = 30.0 bits (66), Expect = 5.2 Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 4/58 (6%) Frame = +2 Query: 323 GHDAAAEGYASDDFVQGSSSANRE----RKKGVPWTEEEHRRFLLGLQKLGKGDWRGI 484 G AAE + + Q R+ RK V WTE+E L G Q G G+W+ I Sbjct: 24 GSILAAENPSKREVAQDVPGFERKPTKVRKPRVKWTEKETNDLLRGCQIHGVGNWKKI 81
>ZCH12_MOUSE (Q9CZA5) Zinc finger CCHC domain-containing protein 12| (Smad-interacting zinc finger protein) Length = 402 Score = 30.0 bits (66), Expect = 5.2 Identities = 11/23 (47%), Positives = 12/23 (52%) Frame = +2 Query: 140 TRRCSHCSYNGHNSRTCPNRGVK 208 T CSHC GH+ TC N K Sbjct: 345 TIHCSHCGEEGHSKETCDNESDK 367
>LAMA1_HUMAN (P25391) Laminin alpha-1 chain precursor (Laminin A chain)| Length = 3075 Score = 30.0 bits (66), Expect = 5.2 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 1/50 (2%) Frame = +2 Query: 56 TLRFSSQPTSPLPFRRATPAGALAAPG-MTRRCSHCSYNGHNSRTCPNRG 202 T+ FS Q +P R PAG+ P + C CS N H+ PN G Sbjct: 1368 TVGFSCQDCAPGYHRGKLPAGSDRGPRPLVAPCVPCSCNNHSDTCDPNTG 1417
>COFA1_HUMAN (P39059) Collagen alpha-1(XV) chain precursor [Contains: Endostatin| (Endostatin-XV) (Restin) (Related to endostatin)] Length = 1388 Score = 30.0 bits (66), Expect = 5.2 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 9/53 (16%) Frame = +1 Query: 127 GSGDDEAVLALQLQRPQL------ADVPQPRGQDL---RGAPHRWIHPQERQH 258 G GD+E + A + P + + P P G L AP RWI P +R+H Sbjct: 502 GPGDEEDLAAATTEEPLITAGGEESGSPPPDGPPLPLPTVAPERWITPAQREH 554
>APRR2_ARATH (Q6LA43) Two-component response regulator-like APRR2| (Pseudo-response regulator 2) (TOC2 protein) Length = 535 Score = 30.0 bits (66), Expect = 5.2 Identities = 11/28 (39%), Positives = 19/28 (67%) Frame = +2 Query: 380 SANRERKKGVPWTEEEHRRFLLGLQKLG 463 S N+ +K V WT E H++F+ +++LG Sbjct: 290 SGNKTSRKKVDWTPELHKKFVQAVEQLG 317
>YNZ5_CAEEL (P45965) Hypothetical protein T09A5.5| Length = 163 Score = 29.6 bits (65), Expect = 6.8 Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 4/75 (5%) Frame = +2 Query: 356 DDFVQGSSSANRERKKGVPWTEEEHRRFLLGLQKLG----KGDWRGISRNFCGLKNTYSS 523 D FV G S R RKK V W +E ++ +G +G RG++R + + + Sbjct: 65 DPFVVGEYSWLRHRKKRVNWKSKEQVLSMIEEMSIGGDYREGYKRGVNRRLPRGQELWDT 124 Query: 524 SKSCSEIFYTPSQYE 568 ++F+ S+++ Sbjct: 125 ETMGHDVFHVTSKWK 139
>ZCH12_HUMAN (Q6PEW1) Zinc finger CCHC domain-containing protein 12| Length = 402 Score = 29.6 bits (65), Expect = 6.8 Identities = 11/23 (47%), Positives = 13/23 (56%) Frame = +2 Query: 140 TRRCSHCSYNGHNSRTCPNRGVK 208 T RCS+C GH+ TC N K Sbjct: 344 TIRCSYCGEEGHSKETCDNESDK 366
>MPA5A_LOLPR (Q40240) Major pollen allergen Lol p 5a precursor (Lol p Va) (Lol p| Ib) Length = 308 Score = 29.3 bits (64), Expect = 8.9 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 12/60 (20%) Frame = +2 Query: 68 SSQPTSPLPFRRATPAGALAAPGMTRRC------------SHCSYNGHNSRTCPNRGVKI 211 SS+P SP P R ++P A APG+ + +H R CP+R +++ Sbjct: 86 SSRPPSPSPPRASSPTSAAKAPGLIPKLDTAYDVAYKAAEAHPRGQVRRLRHCPHRSLRV 145
>BIK1_YEAST (P11709) Nuclear fusion protein BIK1| Length = 440 Score = 29.3 bits (64), Expect = 8.9 Identities = 11/29 (37%), Positives = 14/29 (48%) Frame = +2 Query: 110 PAGALAAPGMTRRCSHCSYNGHNSRTCPN 196 PA G + C HC GHN+ CP+ Sbjct: 403 PAPVDTTAGRQQWCEHCDTMGHNTAECPH 431
>SSBP4_HUMAN (Q9BWG4) Single-stranded DNA-binding protein 4| Length = 385 Score = 29.3 bits (64), Expect = 8.9 Identities = 21/63 (33%), Positives = 27/63 (42%) Frame = +2 Query: 56 TLRFSSQPTSPLPFRRATPAGALAAPGMTRRCSHCSYNGHNSRTCPNRGVKIFGVRLTDG 235 TLR SQP + LP + GA+ R H S G R P RG+ G + G Sbjct: 159 TLRMPSQPPAGLPGSQPLLPGAMEP--SPRAQGHPSMGGPMQRVTPPRGMASVGPQSYGG 216 Query: 236 SIR 244 +R Sbjct: 217 GMR 219
>MYBB_XENLA (P52551) Myb-related protein B (B-Myb) (Myb-related protein 1)| (XMYB1) Length = 743 Score = 29.3 bits (64), Expect = 8.9 Identities = 12/35 (34%), Positives = 20/35 (57%) Frame = +2 Query: 389 RERKKGVPWTEEEHRRFLLGLQKLGKGDWRGISRN 493 +E + V WT EE ++K G+G+W+ I+ N Sbjct: 26 KENRVKVKWTPEEDETLKALVKKHGQGEWKTIASN 60
>AIR1_YEAST (P40507) Protein AIR1 (Arginine methyltransferase-interacting RING| finger protein 1) Length = 360 Score = 29.3 bits (64), Expect = 8.9 Identities = 9/22 (40%), Positives = 15/22 (68%) Frame = +2 Query: 149 CSHCSYNGHNSRTCPNRGVKIF 214 C++C+ NGH CP++ K+F Sbjct: 114 CTNCNANGHYKSQCPHKWKKVF 135
>ZCH12_RAT (Q5HZA3) Zinc finger CCHC domain-containing protein 12| Length = 401 Score = 29.3 bits (64), Expect = 8.9 Identities = 10/19 (52%), Positives = 11/19 (57%) Frame = +2 Query: 140 TRRCSHCSYNGHNSRTCPN 196 T CSHC GH+ TC N Sbjct: 344 TVHCSHCGEEGHSKETCDN 362
>CHD1_YEAST (P32657) Chromo domain protein 1 (EC 3.6.1.-) (ATP-dependent helicase| CHD1) Length = 1468 Score = 29.3 bits (64), Expect = 8.9 Identities = 11/24 (45%), Positives = 15/24 (62%) Frame = +2 Query: 413 WTEEEHRRFLLGLQKLGKGDWRGI 484 WT+EE + L+G+ K G G W I Sbjct: 1175 WTKEEDEKLLIGVFKYGYGSWTQI 1198
>PAM17_USTMA (Q4P983) Presequence translocated-associated motor subunit PAM17,| mitochondrial precursor Length = 232 Score = 29.3 bits (64), Expect = 8.9 Identities = 13/51 (25%), Positives = 28/51 (54%) Frame = +2 Query: 17 LRCSXXXXXXTATTLRFSSQPTSPLPFRRATPAGALAAPGMTRRCSHCSYN 169 L S ++++ R + PTSP+ F ++ + + ++P +R SH S++ Sbjct: 33 LSTSSKVASSSSSSNRGTFSPTSPILFSASSSSSSSSSPSSSRELSHLSWD 83 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 68,338,225 Number of Sequences: 219361 Number of extensions: 1261346 Number of successful extensions: 4366 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 4164 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4366 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5158951200 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
