ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal12p13 |
|---|---|
| Clone Library Name | barley_pub |
>UNC89_CAEEL (O01761) Muscle M-line assembly protein unc-89 (Uncoordinated protein| 89) Length = 8081 Score = 31.6 bits (70), Expect = 1.3 Identities = 18/91 (19%), Positives = 37/91 (40%), Gaps = 15/91 (16%) Frame = +2 Query: 215 EIADPVIKDKAAMPVLKKDKNPKS---------------SGPAKRKRTPTLEDEKAMPYK 349 E+ P K+K+ KK+K+P S P K++++P ++ P K Sbjct: 1426 EVKSPTKKEKSPSSPTKKEKSPSSPTKKTGDEVKEKSPPKSPTKKEKSPEKPEDVKSPVK 1485 Query: 350 SEKLQNDSTVIDMGPPADWVKINVRRTVSIS 442 EK + + ++++ K T ++ Sbjct: 1486 KEKSPDATNIVEVSSETTIEKTETTMTTEMT 1516
>EF1G1_ARATH (O04487) Probable elongation factor 1-gamma 1 (EF-1-gamma 1)| (eEF-1B gamma 1) Length = 414 Score = 30.4 bits (67), Expect = 2.8 Identities = 22/84 (26%), Positives = 36/84 (42%) Frame = +2 Query: 215 EIADPVIKDKAAMPVLKKDKNPKSSGPAKRKRTPTLEDEKAMPYKSEKLQNDSTVIDMGP 394 E P+ KAA P K++ K P P L +E+ P K +D+ P Sbjct: 210 EAVPPIASKKAAQPAKPKEEPKKKEAPV--AEAPKLAEEEEAPKPKAK-----NPLDLLP 262 Query: 395 PADWVKINVRRTVSISFSKYKIVS 466 P+ V + +R S + S ++ V+ Sbjct: 263 PSPMVLDDWKRLYSNTKSNFREVA 286
>PP28_HCMVA (P13200) Tegument protein UL99 (28 kDa structural phosphoprotein)| (PP28) Length = 189 Score = 30.0 bits (66), Expect = 3.7 Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 3/57 (5%) Frame = +2 Query: 236 KDKAAMPVLKKDKNPKSSGPAKRKRTPTL---EDEKAMPYKSEKLQNDSTVIDMGPP 397 K A ++DK PK S +K+K+ P+ + ++ +++ L + T I + PP Sbjct: 89 KKNAVRSTFREDKAPKPSKQSKKKKKPSKHHHHQQSSIMQETDDLDEEDTSIYLSPP 145
>RENT2_HUMAN (Q9HAU5) Regulator of nonsense transcripts 2 (Nonsense mRNA| reducing factor 2) (Up-frameshift suppressor 2 homolog) (hUpf2) Length = 1272 Score = 29.6 bits (65), Expect = 4.8 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%) Frame = +2 Query: 293 PAKRKRTPTLEDEKAMPYKSEK-LQNDSTVIDMGPPADWVKINVRRTVS 436 PA+RK+ ++E++ ++P EK TV P D +K+ ++ VS Sbjct: 2 PAERKKPASMEEKDSLPNNKEKDCSERRTVSSKERPKDDIKLTAKKEVS 50
>UL16_EBV (P03221) Protein BGLF2| Length = 336 Score = 29.6 bits (65), Expect = 4.8 Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 5/88 (5%) Frame = -2 Query: 456 LYLENEILTVLRT-FIFTQSAGGPMSITVESFCSFSDLYG----IAFSSSKVXXXXXXXX 292 +Y+ + TV R +FT++ GP S+T+ F FSD G + + V Sbjct: 75 VYINGTLATVARPEVLFTKAVQGPHSLTLMYFGVFSDAVGEAVPVEIRGNPVVTCTDLTT 134 Query: 291 XXXXXXXXXFKTGIAALSLITGSAISPL 208 KT + L IT S I PL Sbjct: 135 AHVFTTSTAVKT-VEELQDITPSEIIPL 161
>EF1G2_ARATH (Q9FVT2) Probable elongation factor 1-gamma 2 (EF-1-gamma 2)| (eEF-1B gamma 2) Length = 413 Score = 29.6 bits (65), Expect = 4.8 Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 3/94 (3%) Frame = +2 Query: 194 QRLLGNG---EIADPVIKDKAAMPVLKKDKNPKSSGPAKRKRTPTLEDEKAMPYKSEKLQ 364 +++LG+ E PV KA P K++ PK + P P E+E P K + Sbjct: 200 KKVLGDAKQTEAVPPVPTKKAPQPAKPKEE-PKKAAPVAEAPKPAEEEEAPKP----KAK 254 Query: 365 NDSTVIDMGPPADWVKINVRRTVSISFSKYKIVS 466 N +D+ PP+ V + +R S + S ++ V+ Sbjct: 255 NP---LDLLPPSPMVLDDWKRLYSNTKSNFREVA 285
>RRN6_YEAST (P32786) RNA polymerase I-specific transcription initiation factor| RRN6 Length = 894 Score = 29.3 bits (64), Expect = 6.3 Identities = 18/43 (41%), Positives = 25/43 (58%) Frame = +2 Query: 272 KNPKSSGPAKRKRTPTLEDEKAMPYKSEKLQNDSTVIDMGPPA 400 K+ +SSG A+RKR + +KA P S+ QN S + D PA Sbjct: 817 KSSQSSGLARRKRILKTQSQKATPL-SQSTQNLSVLPDSMTPA 858
>RP8L4_ARATH (Q9FJK8) Probable disease resistance RPP8-like protein 4| Length = 908 Score = 29.3 bits (64), Expect = 6.3 Identities = 23/92 (25%), Positives = 41/92 (44%) Frame = +2 Query: 191 SQRLLGNGEIADPVIKDKAAMPVLKKDKNPKSSGPAKRKRTPTLEDEKAMPYKSEKLQND 370 S+RL G E D + + ++ L KD + K G + + LED K + + +E + Sbjct: 21 SERLQGIDEQLDGLKRQLRSLQSLLKDADAKKHGSDRVRNF--LEDVKDLVFDAEDIIES 78 Query: 371 STVIDMGPPADWVKINVRRTVSISFSKYKIVS 466 + + VK +VRR ++K+ S Sbjct: 79 YVLNKLRGEGKGVKKHVRRLARFLTDRHKVAS 110
>RP8HA_ARATH (P59584) Disease resistance protein RPH8A (RPP8 homolog A)| Length = 910 Score = 29.3 bits (64), Expect = 6.3 Identities = 23/92 (25%), Positives = 41/92 (44%) Frame = +2 Query: 191 SQRLLGNGEIADPVIKDKAAMPVLKKDKNPKSSGPAKRKRTPTLEDEKAMPYKSEKLQND 370 S+RL G E D + + ++ L KD + K G + + LED K + + +E + Sbjct: 21 SERLQGIDEQLDGLKRQLRSLQSLLKDADAKKHGSDRVRNF--LEDVKDLVFDAEDIIES 78 Query: 371 STVIDMGPPADWVKINVRRTVSISFSKYKIVS 466 + + VK +VRR ++K+ S Sbjct: 79 YVLNKLRGEGKGVKKHVRRLARFLTDRHKVAS 110
>RP8L3_ARATH (Q9FJB5) Probable disease resistance RPP8-like protein 3| Length = 901 Score = 28.9 bits (63), Expect = 8.2 Identities = 23/92 (25%), Positives = 40/92 (43%) Frame = +2 Query: 191 SQRLLGNGEIADPVIKDKAAMPVLKKDKNPKSSGPAKRKRTPTLEDEKAMPYKSEKLQND 370 S+RL G E D + + + L KD + K G + + LED K + + +E + Sbjct: 21 SERLNGIDEQVDGLKRQLRGLQSLLKDADAKKHGSDRVRNF--LEDVKDLVFDAEDIIES 78 Query: 371 STVIDMGPPADWVKINVRRTVSISFSKYKIVS 466 + + VK +VRR ++K+ S Sbjct: 79 YVLNKLRGEGKGVKNHVRRLACFLTDRHKVAS 110 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 70,106,988 Number of Sequences: 219361 Number of extensions: 1289836 Number of successful extensions: 3368 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 3287 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3364 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3638905326 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
