>RCAA_HORVU (Q40073) Ribulose bisphosphate carboxylase/oxygenase activase A,|
           chloroplast precursor (RuBisCO activase A) (RA A)
          Length = 464

 Score =  264 bits (675), Expect = 7e-71
 Identities = 131/132 (99%), Positives = 131/132 (99%)
 Frame = +3

Query: 60  MAAAFSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDK 239
           MAAAFSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDK
Sbjct: 1   MAAAFSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDK 60

Query: 240 WKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGG 419
           WKGLAYDISDDQQDITRGKGIVDSLFQAPTG GTHEAVLSSYEYVSQGLRKYDFDNTMGG
Sbjct: 61  WKGLAYDISDDQQDITRGKGIVDSLFQAPTGHGTHEAVLSSYEYVSQGLRKYDFDNTMGG 120

Query: 420 FYIAPAFMDKLV 455
           FYIAPAFMDKLV
Sbjct: 121 FYIAPAFMDKLV 132

>RCA_ORYSA (P93431) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 432

 Score =  233 bits (593), Expect = 2e-61
 Identities = 118/134 (88%), Positives = 123/134 (91%), Gaps = 2/134 (1%)
 Frame = +3

Query: 60  MAAAFSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTD- 236
           MAAAFSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSS  NRF VMA E +DE + TD 
Sbjct: 1   MAAAFSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSNINRFKVMAKE-LDEGKQTDQ 59

Query: 237 -KWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTM 413
            +WKGLAYDISDDQQDITRGKG VDSLFQAPTGDGTHEAVLSSYEY+SQGLR YDFDNTM
Sbjct: 60  DRWKGLAYDISDDQQDITRGKGFVDSLFQAPTGDGTHEAVLSSYEYLSQGLRTYDFDNTM 119

Query: 414 GGFYIAPAFMDKLV 455
           GGFYIAP+FMDKLV
Sbjct: 120 GGFYIAPSFMDKLV 133

>RCA_MAIZE (Q9ZT00) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 433

 Score =  195 bits (496), Expect = 4e-50
 Identities = 102/138 (73%), Positives = 116/138 (84%), Gaps = 6/138 (4%)
 Frame = +3

Query: 60  MAAAFSSTVGAPASTPT--NFLGKKLKK-QVTSAVNYHGKSSKAN-RFTVMAAENIDEKR 227
           MAAAFSSTVGAPASTPT  +FLGKKL K QV++AV YHGKSS +N RF  MAA+ +DE +
Sbjct: 1   MAAAFSSTVGAPASTPTRSSFLGKKLNKPQVSAAVTYHGKSSSSNSRFKAMAAKEVDETK 60

Query: 228 NTD--KWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDF 401
            TD  +WKGLAYDISDDQQDITRGKG+VD+LFQAP GDGTH AVLSSY+Y+SQG + Y+F
Sbjct: 61  QTDEDRWKGLAYDISDDQQDITRGKGLVDNLFQAPMGDGTHVAVLSSYDYISQGQKSYNF 120

Query: 402 DNTMGGFYIAPAFMDKLV 455
           DN M GFYIA  FMDKLV
Sbjct: 121 DNMMDGFYIAKGFMDKLV 138

>RCAB_HORVU (Q42450) Ribulose bisphosphate carboxylase/oxygenase activase B,|
           chloroplast precursor (RuBisCO activase B) (RA B)
          Length = 425

 Score =  188 bits (477), Expect = 6e-48
 Identities = 99/136 (72%), Positives = 111/136 (81%), Gaps = 4/136 (2%)
 Frame = +3

Query: 60  MAAAFSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSKANRFT-VMAAEN-IDEKRNT 233
           MA+AFSSTVGAPASTPT FLGKK+K        YHG +   +R   VMAA+  +D+ + T
Sbjct: 1   MASAFSSTVGAPASTPTIFLGKKVKNY------YHGGNKMKSRVVRVMAAKKELDQGKQT 54

Query: 234 D--KWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDN 407
           D  +WKGLAYDISDDQQDITRGKGIVDSLFQAP GDGTHEA+LSSYEY+SQGLRKYDFDN
Sbjct: 55  DADRWKGLAYDISDDQQDITRGKGIVDSLFQAPMGDGTHEAILSSYEYISQGLRKYDFDN 114

Query: 408 TMGGFYIAPAFMDKLV 455
           TM G YIAPAFMDKL+
Sbjct: 115 TMDGLYIAPAFMDKLI 130

>RCA_ARATH (P10896) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 474

 Score =  147 bits (371), Expect = 1e-35
 Identities = 78/127 (61%), Positives = 92/127 (72%)
 Frame = +3

Query: 75  SSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDKWKGLA 254
           S  V APAST   FLGKK    V +   +   + K+N    + A   D++ + D+W+GLA
Sbjct: 23  SGAVSAPAST---FLGKK----VVTVSRFAQSNKKSNGSFKVLAVKEDKQTDGDRWRGLA 75

Query: 255 YDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAP 434
           YD SDDQQDITRGKG+VDS+FQAP G GTH AVLSSYEYVSQGLR+Y+ DN M GFYIAP
Sbjct: 76  YDTSDDQQDITRGKGMVDSVFQAPMGTGTHHAVLSSYEYVSQGLRQYNLDNMMDGFYIAP 135

Query: 435 AFMDKLV 455
           AFMDKLV
Sbjct: 136 AFMDKLV 142

>RCA_MALDO (Q40281) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 437

 Score =  145 bits (367), Expect = 4e-35
 Identities = 77/129 (59%), Positives = 93/129 (72%), Gaps = 2/129 (1%)
 Frame = +3

Query: 75  SSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDK--WKG 248
           SS+   P+ST   FLG  LKK     VN    +SK +  ++    ++DE + TDK  WKG
Sbjct: 22  SSSASVPSST---FLGSSLKK-----VNSRFTNSKVSSGSLRIVASVDEDKQTDKDRWKG 73

Query: 249 LAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYI 428
           LA+D SDDQQDITRGKG VDSLFQAP G GTH A++SSYEY+S GLR+Y+FDN M G+YI
Sbjct: 74  LAFDTSDDQQDITRGKGKVDSLFQAPQGSGTHFAIMSSYEYISTGLRQYNFDNNMDGYYI 133

Query: 429 APAFMDKLV 455
           APAFMDKLV
Sbjct: 134 APAFMDKLV 142

>RCA2_LARTR (Q7X999) Ribulose bisphosphate carboxylase/oxygenase activase 2,|
           chloroplast precursor (RuBisCO activase 2) (RA 2)
           (RubisCO activase beta form)
          Length = 435

 Score =  145 bits (366), Expect = 5e-35
 Identities = 78/143 (54%), Positives = 98/143 (68%), Gaps = 11/143 (7%)
 Frame = +3

Query: 60  MAAAFSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSK----------ANRFTVMAAE 209
           MAAA+S TVGA    P +  G   +  +  +  + G S K          +  F ++A E
Sbjct: 1   MAAAYS-TVGAVNRAPLSLNGSGARASLVPSTAFFGSSLKKSAAKFPKASSGNFKIVAQE 59

Query: 210 -NIDEKRNTDKWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGL 386
            + D++ + DKWKGLAYDISDDQQDITRGKG+VD+LFQAP   GTH AV+SSY+Y+SQGL
Sbjct: 60  ISEDQQTDKDKWKGLAYDISDDQQDITRGKGMVDTLFQAPMQSGTHYAVMSSYDYISQGL 119

Query: 387 RKYDFDNTMGGFYIAPAFMDKLV 455
           R+Y+ DN M GFYIAPAFMDKLV
Sbjct: 120 RQYNLDNNMDGFYIAPAFMDKLV 142

>RCA1_LARTR (Q7X9A0) Ribulose bisphosphate carboxylase/oxygenase activase 1,|
           chloroplast precursor (RuBisCO activase 1) (RA 1)
           (RubisCO activase alpha form)
          Length = 476

 Score =  145 bits (366), Expect = 5e-35
 Identities = 78/143 (54%), Positives = 98/143 (68%), Gaps = 11/143 (7%)
 Frame = +3

Query: 60  MAAAFSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSK----------ANRFTVMAAE 209
           MAAA+S TVGA    P +  G   +  +  +  + G S K          +  F ++A E
Sbjct: 1   MAAAYS-TVGAVNRAPLSLNGSGARASLVPSTAFFGSSLKKSAAKFPKASSGNFKIVAQE 59

Query: 210 -NIDEKRNTDKWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGL 386
            + D++ + DKWKGLAYDISDDQQDITRGKG+VD+LFQAP   GTH AV+SSY+Y+SQGL
Sbjct: 60  ISEDQQTDKDKWKGLAYDISDDQQDITRGKGMVDTLFQAPMQSGTHYAVMSSYDYISQGL 119

Query: 387 RKYDFDNTMGGFYIAPAFMDKLV 455
           R+Y+ DN M GFYIAPAFMDKLV
Sbjct: 120 RQYNLDNNMDGFYIAPAFMDKLV 142

>RCA1_TOBAC (Q40460) Ribulose bisphosphate carboxylase/oxygenase activase 1,|
           chloroplast precursor (RuBisCO activase 1) (RA 1)
          Length = 442

 Score =  142 bits (358), Expect = 4e-34
 Identities = 80/142 (56%), Positives = 93/142 (65%), Gaps = 16/142 (11%)
 Frame = +3

Query: 78  STVGAPASTP--------------TNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENI 215
           ST+GA   TP              T F GK LKK     V+    ++K+ R  V    ++
Sbjct: 6   STIGAVNKTPLSLNNSVAGTSVPSTAFFGKTLKKVYGKGVSSPKVTNKSLRI-VAEQIDV 64

Query: 216 DEKRNTD--KWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLR 389
           D K+ TD  +WKGL  D SDDQQDITRGKG+VDSLFQAPTG GTH AVL SYEYVSQGLR
Sbjct: 65  DPKKQTDSDRWKGLVQDFSDDQQDITRGKGMVDSLFQAPTGTGTHHAVLQSYEYVSQGLR 124

Query: 390 KYDFDNTMGGFYIAPAFMDKLV 455
           +Y+ DN + GFYIAPAFMDKLV
Sbjct: 125 QYNLDNKLDGFYIAPAFMDKLV 146

>RCA2_TOBAC (Q40565) Ribulose bisphosphate carboxylase/oxygenase activase 2,|
           chloroplast precursor (RuBisCO activase 2) (RA 2)
          Length = 439

 Score =  140 bits (352), Expect = 2e-33
 Identities = 76/133 (57%), Positives = 91/133 (68%), Gaps = 4/133 (3%)
 Frame = +3

Query: 69  AFSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAE--NIDEKRNT--D 236
           + +++V   +   T F GK LKK     V+        NR   +AAE  + D K+ T  D
Sbjct: 17  SLNNSVAGTSVPSTAFFGKTLKKVYGKGVS---SPKVTNRSLRIAAEEKDADPKKQTYSD 73

Query: 237 KWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMG 416
           +WKGL  D SDDQQDI RGKG+VDSLFQAPTG GTH AVL SYEYVSQGLR+Y+ DNT+ 
Sbjct: 74  RWKGLVQDFSDDQQDIARGKGMVDSLFQAPTGTGTHHAVLQSYEYVSQGLRQYNMDNTLD 133

Query: 417 GFYIAPAFMDKLV 455
           GFYIAP+FMDKLV
Sbjct: 134 GFYIAPSFMDKLV 146

>RCA_SPIOL (P10871) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 472

 Score =  136 bits (342), Expect = 3e-32
 Identities = 76/123 (61%), Positives = 84/123 (68%), Gaps = 1/123 (0%)
 Frame = +3

Query: 90  APASTPTN-FLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDKWKGLAYDIS 266
           A AS PT+ FLG  LKK           SS+    TV AAEN  E++NTDKW  LA D S
Sbjct: 23  AGASVPTSGFLGSSLKKHTNVRFP---SSSRTTSMTVKAAEN--EEKNTDKWAHLAKDFS 77

Query: 267 DDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMD 446
           DDQ DI RGKG+VDSLFQAP   GTH  + SS+EY SQGLRKYD DN +G FYIAPAFMD
Sbjct: 78  DDQLDIRRGKGMVDSLFQAPADAGTHVPIQSSFEYESQGLRKYDIDNMLGDFYIAPAFMD 137

Query: 447 KLV 455
           KLV
Sbjct: 138 KLV 140

>RCA_PHAVU (O64981) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 441

 Score =  135 bits (340), Expect = 5e-32
 Identities = 72/126 (57%), Positives = 93/126 (73%), Gaps = 3/126 (2%)
 Frame = +3

Query: 87  GAPASTPTN-FLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNT--DKWKGLAY 257
           G  AS P++ F G  LKK ++S V  + K +  +   V A + I+E + T  D+W+GLAY
Sbjct: 22  GGGASGPSSAFFGTSLKKVISSRVP-NSKLTSGSFKIVAADKEIEETQQTEGDRWRGLAY 80

Query: 258 DISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPA 437
           D+SDDQQDITRGKG+VDSLFQAP   GTH AV+SS++Y+S GLR+Y+FDN   GFYIAPA
Sbjct: 81  DVSDDQQDITRGKGLVDSLFQAPMDAGTHYAVISSHKYLSAGLRQYNFDNIKDGFYIAPA 140

Query: 438 FMDKLV 455
           F+DKLV
Sbjct: 141 FLDKLV 146

>RCA_LYCPN (O49074) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 459

 Score =  134 bits (338), Expect = 8e-32
 Identities = 74/144 (51%), Positives = 90/144 (62%), Gaps = 14/144 (9%)
 Frame = +3

Query: 66  AAFSSTVGAPASTP--------------TNFLGKKLKKQVTSAVNYHGKSSKANRFTVMA 203
           AA  ST+GA +  P              T F GK LKK     V+       +NR   + 
Sbjct: 2   AASVSTIGAASKAPLSLNNSVAGTSVPSTAFFGKSLKKVYAKGVS---SPKVSNRNLRVV 58

Query: 204 AENIDEKRNTDKWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQG 383
           A+ +DE +  D+WKGL  + SDDQQDI RGKG+VDSLFQAPTG GTH A+++SYEYVSQ 
Sbjct: 59  AQEVDETKE-DRWKGLYDNTSDDQQDIARGKGLVDSLFQAPTGTGTHHAIMNSYEYVSQA 117

Query: 384 LRKYDFDNTMGGFYIAPAFMDKLV 455
           L+ Y  DN + GFYIAPAFMDKLV
Sbjct: 118 LKTYQLDNKLDGFYIAPAFMDKLV 141

>RCA_CUCSA (Q01587) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 413

 Score =  134 bits (337), Expect = 1e-31
 Identities = 74/143 (51%), Positives = 91/143 (63%), Gaps = 14/143 (9%)
 Frame = +3

Query: 66  AAFSSTVGAPASTPTN------------FLGKKLKKQVTSAVNYHGKSSK--ANRFTVMA 203
           AA  ST+GA   T  N            FLG +LK      V+    +SK     F ++A
Sbjct: 2   AATVSTIGAVNRTTLNNSNYGGLVPNSAFLGSRLK------VSSRFTTSKMVTGNFKIVA 55

Query: 204 AENIDEKRNTDKWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQG 383
            ++ +++   DKW+GLA+D SDDQQDITRGKG+ D LFQAP G GTH AVLSSYEY+S G
Sbjct: 56  EQDEEKQTEKDKWRGLAFDTSDDQQDITRGKGLADPLFQAPMGTGTHNAVLSSYEYISAG 115

Query: 384 LRKYDFDNTMGGFYIAPAFMDKL 452
           LR Y +DN + GFYIAPAFMDKL
Sbjct: 116 LRDYSYDNNVDGFYIAPAFMDKL 138

>RCA_PHAAU (O98997) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 439

 Score =  132 bits (333), Expect = 3e-31
 Identities = 76/126 (60%), Positives = 89/126 (70%), Gaps = 3/126 (2%)
 Frame = +3

Query: 87  GAPASTPTN-FLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNT--DKWKGLAY 257
           GA AS PT+ F G  LKK V S V  + K +  +   V A + I+E + T  D+WKGLAY
Sbjct: 22  GAGASAPTSAFFGTSLKKAVASRVP-NSKVTNGSFKIVAAEKEIEESQQTNKDRWKGLAY 80

Query: 258 DISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPA 437
           DISDDQQDITRGKG+VD LFQAP   GTH AV+SSYEY+S GLR+   DN   GFYIAPA
Sbjct: 81  DISDDQQDITRGKGMVDPLFQAPMDAGTHYAVMSSYEYLSTGLRQ--LDNIKDGFYIAPA 138

Query: 438 FMDKLV 455
           F+DKLV
Sbjct: 139 FLDKLV 144

>RCA_CHLRE (P23489) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 408

 Score = 77.4 bits (189), Expect = 2e-14
 Identities = 41/80 (51%), Positives = 54/80 (67%), Gaps = 3/80 (3%)
 Frame = +3

Query: 222 KRNTDKWKGL--AYDISDDQQDITRGKGIVDSLFQAPTG-DGTHEAVLSSYEYVSQGLRK 392
           ++   +W+ +    D SDDQQDITRG+ +VD LFQ   G  GTH AVLSS EY+SQ   +
Sbjct: 37  RKQMGRWRSIDAGVDASDDQQDITRGREMVDDLFQGGFGAGGTHNAVLSSQEYLSQS--R 94

Query: 393 YDFDNTMGGFYIAPAFMDKL 452
             F+N   GFYI+PAF+DK+
Sbjct: 95  ASFNNIEDGFYISPAFLDKM 114

>PTR2_CANAL (P46030) Peptide transporter PTR2|
          Length = 623

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 10/59 (16%)
 Frame = -1

Query: 337 PSPVGAWKSESTMPFPLVMSCW----SSEISYAR------PFHLSVFLFSSMFSAAMTV 191
           P+P+ AWK+ S         CW    + E++Y R          ++FL  S FSAA+++
Sbjct: 488 PAPITAWKASSLFILAAAGECWAYTTAYELAYTRSPPALKSLVYALFLVMSAFSAALSL 546

>PCRB_SULAC (Q4JAS3) Protein pcrB homolog|
          Length = 257

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 17/59 (28%), Positives = 31/59 (52%)
 Frame = -3

Query: 425 VEASHGVVEVVLPQALADVLVGAEDGLVGAVARGRLEERVHDALPSGDVLLVVGDIVRK 249
           +EA  G  E V P+A+  V    +DG+V        EER  + + +G  ++V G+++ +
Sbjct: 176 LEAGSGASETVKPEAIKVVKNTVKDGVVIVGGGVTSEERARNLVLAGADIIVTGNVIER 234

>RS3A_PICTO (Q6KYU3) 30S ribosomal protein S3Ae|
          Length = 209

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 21/85 (24%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
 Frame = +3

Query: 90  APASTPTNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDKWKGLAYDISD 269
           +PA+ P+  +G+K++  V+   ++ G   K++   +   +    KR T ++ G  + +SD
Sbjct: 35  SPAADPSLMIGRKVEVPVS---DFTGNFRKSSTMVIFRVKECTGKRCTTEFIG--HKVSD 89

Query: 270 D--QQDITRGKGIVDSLFQAPTGDG 338
           D  ++ + R K  +D +  + T DG
Sbjct: 90  DTIRRMVRRRKERIDIIMPSKTKDG 114

>CASZ1_MOUSE (Q9CWL2) Castor homolog 1 zinc finger protein (Castor-related|
           protein) (Fragment)
          Length = 255

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +3

Query: 36  QGRPSSTEMAAAFSSTVGAPASTPTNFLGKKLKKQV 143
           QG PS     +  +   G+PA  P+ FLGK +K  V
Sbjct: 52  QGNPSLESFLSIKTEAEGSPAGEPSPFLGKAVKALV 87

>RT107_YEAST (P38850) Regulator of Ty1 transposition protein 107|
          Length = 1070

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 14/53 (26%), Positives = 28/53 (52%)
 Frame = +3

Query: 168 KSSKANRFTVMAAENIDEKRNTDKWKGLAYDISDDQQDITRGKGIVDSLFQAP 326
           K  + +   +++ E++  K++TDK+  L   +SD+   I   K  V+S +  P
Sbjct: 688 KQGEESTGKLISTEDVTSKKDTDKFSHLFEGLSDNDDHINDEKPAVNSKYTTP 740

>PTN13_MOUSE (Q64512) Tyrosine-protein phosphatase non-receptor type 13 (EC|
           3.1.3.48) (Protein tyrosine phosphatase PTP-BL)
           (Protein-tyrosine phosphatase RIP) (protein tyrosine
           phosphatase DPZPTP) (PTP36)
          Length = 2453

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +3

Query: 258 DISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRK 392
           D S   +D  RGKG+            THEA LS   +V++GL K
Sbjct: 195 DRSQAIRDRLRGKGLPTGRSSTSDALDTHEAPLSQQTFVNKGLSK 239

>DHOM_HELPJ (Q9ZL20) Homoserine dehydrogenase (EC 1.1.1.3) (HDH)|
          Length = 421

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 225 RNTDKWKGLAYDISDDQQDITRGKGI 302
           R+  K KG A++ISDD + +   KGI
Sbjct: 46  RDVKKHKGYAFEISDDLESVIEDKGI 71

>TRPC_HALVO (P18304) Indole-3-glycerol phosphate synthase (EC 4.1.1.48) (IGPS)|
          Length = 251

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 20/60 (33%), Positives = 30/60 (50%)
 Frame = -3

Query: 425 VEASHGVVEVVLPQALADVLVGAEDGLVGAVARGRLEERVHDALPSGDVLLVVGDIVRKT 246
           +E   G  E + P+A  DVL+ AE G+       R+ E   DAL  G  ++  GD+ + T
Sbjct: 188 LEVDLGTFEELAPEAPEDVLLVAESGVQTVDDARRMREAGADALLVGTAIM-DGDVRQNT 246

>SWC3_ASHGO (Q758T8) SWR1-complex protein 3|
          Length = 688

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
 Frame = +3

Query: 66  AAFSSTVGAPASTPTNF-LGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDKW 242
           A  SST GAP      F  G  + K  TSA+  HG  S+      + AE     R   K+
Sbjct: 434 ATLSSTDGAPPLNRRQFPCGIWVTKMQTSALEAHGAISEKGTTITIKAEEGTAPRQKRKY 493

Query: 243 KGLAYDISDDQQDI 284
                ++ D+ + +
Sbjct: 494 TKRKKEVEDEDKSM 507

>TRIPC_HUMAN (Q14669) Thyroid receptor-interacting protein 12 (TRIP12)|
          Length = 1992

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 14/27 (51%), Positives = 15/27 (55%)
 Frame = +2

Query: 17  AHPPLLARSTKQHRDGCCLLLHRRGSG 97
           A  P L RST+Q   G C    RRGSG
Sbjct: 315 AELPSLRRSTRQKTTGSCASTSRRGSG 341


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.310    0.118    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,442,925
Number of Sequences: 219361
Number of extensions: 1034068
Number of successful extensions: 2913
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 2842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2902
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2851757076
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)