Clone Name	baal12p01
Clone Library Name	barley_pub

---

No.	Definition	Score (bits)	E Value
1	gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mR...	781	0.0
2	gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA	700	0.0
3	gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5...	630	e-178
4	gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mR...	466	e-128
5	gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha for...	260	3e-66
6	gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form...	240	3e-60
7	gb|AF251264.1|AF251264 Triticum aestivum ribulose bisphosphate c...	230	3e-57
8	gb|M55448.1|BLYRCAB Hordeum vulgare rubisco activase (RcaB) mRNA...	230	3e-57
9	gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carb...	212	7e-52
10	dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ...	212	7e-52
11	dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clon...	212	7e-52
12	dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clon...	212	7e-52
13	dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clon...	212	7e-52
14	dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clon...	212	7e-52
15	dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase s...	212	7e-52
16	dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase l...	212	7e-52
17	gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome...	176	4e-41
18	gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome...	176	4e-41
19	dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D...	176	4e-41
20	gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome...	176	4e-41
21	dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clon...	172	6e-40
22	gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/ox...	133	5e-28
23	gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase ...	111	2e-21
24	gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase ...	111	2e-21
25	gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase ...	111	2e-21
26	gb|AY110044.1| Zea mays CL1146_1 mRNA sequence	111	2e-21
27	gb|AF329934.1|AF329934 Gossypium hirsutum ribulose-1,5-bisphosph...	64	4e-07
28	emb|Z21794.1|MDRBSCACA M.domestica ribulose-1,5-bisphosphate car...	56	9e-05
29	gb|AF126870.2|AF126870 Vigna radiata rubisco activase (Rca) mRNA...	54	4e-04
30	gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ...	46	0.090
31	gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome	44	0.36
32	gb|AE015925.1| Chlamydophila caviae GPIC, complete genome	44	0.36
33	emb|CR701838.2|CNS0G4HM Tetraodon nigroviridis full-length cDNA	42	1.4
34	emb|CR686472.2|CNS0FSMS Tetraodon nigroviridis full-length cDNA	42	1.4
35	emb|CR681817.2|CNS0FP1H Tetraodon nigroviridis full-length cDNA	42	1.4
36	emb|CR680161.1|CNS0FNRH Tetraodon nigroviridis full-length cDNA	42	1.4
37	emb|CR675309.2|CNS0FK1F Tetraodon nigroviridis full-length cDNA	42	1.4
38	gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase ...	42	1.4
39	gb|CP000002.2| Bacillus licheniformis ATCC 14580, complete genome	40	5.5
40	gb|AY820769.1| Homo sapiens HCV NS5A trans-regulated protein 13 ...	40	5.5
41	gb|AE010322.1| Methanopyrus kandleri AV19 section 21 of 157 of t...	40	5.5
42	gb|CP000110.1| Synechococcus sp. CC9605, complete genome	40	5.5
43	ref|XM_520373.1| PREDICTED: Pan troglodytes LOC464867 (LOC464867...	40	5.5
44	ref|NM_001003053.1| Canis familiaris androgen receptor (dihydrot...	40	5.5
45	ref|NM_004741.1| Homo sapiens nucleolar and coiled-body phosphop...	40	5.5
46	gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, co...	40	5.5
47	gb|AE017333.1| Bacillus licheniformis DSM 13, complete genome	40	5.5
48	ref|NM_017617.2| Homo sapiens Notch homolog 1, translocation-ass...	40	5.5
49	gb|BC001883.1| Homo sapiens nucleolar and coiled-body phosphopro...	40	5.5
50	ref|XM_582842.2| PREDICTED: Bos taurus similar to chromodomain h...	40	5.5
51	gb|DQ483716.1| Gymnogyps californianus clone 139F microsatellite...	40	5.5
52	gb|DQ483952.1| Gymnogyps californianus clone 118G microsatellite...	40	5.5
53	ref|XM_381225.1| Gibberella zeae PH-1 chromosome 1 hypothetical ...	40	5.5
54	gb|BC006769.2| Homo sapiens nucleolar and coiled-body phosphopro...	40	5.5
55	emb|AL592301.14| Human DNA sequence from clone RP11-413M3 on chr...	40	5.5
56	emb|AL500527.19| Human DNA sequence from clone RP11-302K17 on ch...	40	5.5
57	gb|BT009750.1| Synthetic construct Homo sapiens nucleolar and co...	40	5.5
58	gb|AC104422.4| Homo sapiens chromosome 18, clone RP11-260B14, co...	40	5.5
59	emb|CR602162.1| full-length cDNA clone CS0DI026YK04 of Placenta ...	40	5.5
60	dbj|AK056755.1| Homo sapiens cDNA FLJ32193 fis, clone PLACE60023...	40	5.5
61	gb|AC091237.6| Mus musculus Strain C57BL7/J Chromosome 14 RP23-4...	40	5.5
62	gb|AF197950.1| Canis familiaris androgen receptor (AR) mRNA, com...	40	5.5
63	gb|AC100806.2| Homo sapiens chromosome 18, clone CTB-2341H11, co...	40	5.5
64	gb|AC154546.2| Mus musculus BAC clone RP23-431I7 from chromosome...	40	5.5
65	gb|AF308602.1|AF308602 Homo sapiens NOTCH 1 (N1) mRNA, complete cds	40	5.5
66	gb|AC019012.4|AC019012 Genomic Sequence For Arabidopsis thaliana...	40	5.5
67	dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome	40	5.5
68	gb|AY891983.1| Synthetic construct Homo sapiens clone FLH024209....	40	5.5
69	gb|AC018660.1|AC018660 Genomic Sequence For Arabidopsis thaliana...	40	5.5
70	gb|AC134613.5| Mus musculus BAC clone RP23-133J23 from 8, comple...	40	5.5
71	gb|AC153897.4| Mus musculus 10 BAC RP23-119E2 (Roswell Park Canc...	40	5.5
72	dbj|D21262.1|HUMORFGA Homo sapiens KIAA0035 mRNA, partial cds	40	5.5
73	dbj|AP003156.1| Mus musculus genomic DNA, chromosome 16q clone:R...	40	5.5
74	gb|AE008692.1| Zymomonas mobilis subsp. mobilis ZM4, complete ge...	40	5.5
75	gb|M73980.1|HUMTAN1 Human TAN-1 mRNA (homologue of Drosophila No...	40	5.5
76	emb|Z34289.1|HSNUCPP H.sapiens mRNA for nucleolar phosphoprotein...	40	5.5

---

>gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mRNA, complete cds
          Length = 1709

 Score =  781 bits (394), Expect = 0.0
 Identities = 410/414 (99%), Gaps = 1/414 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcacagccgcgcgcatccaccgttgctagcaaggtcgaccaagcagcacagagatggctg 60
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 90  gcacagccgcgcgcatccaccgttg-tagcaaggtcgaccaagcagcacagagatggctg 148

                                                                       
Query: 61  ctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcctcgggaaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 ctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcctcgggaaga 208

                                                                       
Query: 121 agctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctccaaggccaaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 agctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctccaaggccaaca 268

                                                                       
Query: 181 ggttcacagtcatggcagcggagaacatcgacgagaagaggaacaccgacaagtggaagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 ggttcacagtcatggcagcggagaacatcgacgagaagaggaacaccgacaagtggaagg 328

                                                                       
Query: 241 gtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaagggcatcgtgg 300
           |||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 gtcttgctaccgatatctccgacgaccagcaggacatcaccagagggaagggcatcgtgg 388

                                                                       
Query: 301 actcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcagctcctacg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 actcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcagctcctacg 448

                                                                 
Query: 361 agtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggaggct 414
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 agtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggaggct 502

---

>gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA
          Length = 1643

 Score =  700 bits (353), Expect = 0.0
 Identities = 392/405 (96%)
 Strand = Plus / Plus

                                                                       
Query: 10  cgcgcatccaccgttgctagcaaggtcgaccaagcagcacagagatggctgctgccttct 69
           ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 18  cgcgcatccaccgctgctagcaaggtcgagcaagcagcacagagatggctgctgccttct 77

                                                                       
Query: 70  cctccaccgtcggggctccggcttctacgccgaccaacttcctcgggaagaagctcaaga 129
           ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78  cctccaccgtcggtgccccggcttctacgccgaccaacttcctcgggaagaagctcaaga 137

                                                                       
Query: 130 agcaggtgacctcggccgtgaactaccatggcaagagctccaaggccaacaggttcacag 189
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 138 agcaggtgacctcggccgtgaactaccatggcaagagctccaaggccaacaggttcacgg 197

                                                                       
Query: 190 tcatggcagcggagaacatcgacgagaagaggaacaccgacaagtggaagggtcttgcgt 249
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 tcatggcagcggaaaacatcgacgagaagaggaacaccgacaagtggaagggtcttgcgt 257

                                                                       
Query: 250 acgatatctccgacgaccagcaggacatcaccagagggaagggcatcgtggactcgctct 309
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 258 acgatatctccgacgaccagcaggacatcaccagagggaagggcatcgtggactccctct 317

                                                                       
Query: 310 tccaggcgcccacgggcgacggcacccacgaggccgtcctcagctcctacgagtacgtca 369
           ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 318 tccaggcgcccactggcgacggcacccacgaggccgtcctcagctcatacgagtacgtca 377

                                                        
Query: 370 gccagggcctgcggaagtacgacttcgacaacaccatgggaggct 414
           ||||||| ||   ||||||||||||||||||||||||||||||||
Sbjct: 378 gccagggactcaagaagtacgacttcgacaacaccatgggaggct 422

---

>gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5-bisphosphate carboxylase
            activase (RcaB) gene, complete cds; and ribulose
            1,5-bisphosphate carboxylase activase  (RcaA) gene,
            alternatively spliced, complete cds
          Length = 8766

 Score =  630 bits (318), Expect = e-178
 Identities = 324/326 (99%)
 Strand = Plus / Plus

                                                                        
Query: 89   ggcttctacgccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgt 148
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5518 ggcttctacgccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgt 5577

                                                                        
Query: 149  gaactaccatggcaagagctccaaggccaacaggttcacagtcatggcagcggagaacat 208
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5578 gaactaccatggcaagagctccaaggccaacaggttcacagtcatggcagcggagaacat 5637

                                                                        
Query: 209  cgacgagaagaggaacaccgacaagtggaagggtcttgcgtacgatatctccgacgacca 268
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5638 cgacgagaagaggaacaccgacaagtggaagggtcttgcgtacgatatctccgacgacca 5697

                                                                        
Query: 269  gcaggacatcaccagagggaagggcatcgtggactcgctcttccaggcgcccacgggcga 328
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |
Sbjct: 5698 gcaggacatcaccagagggaagggcatcgtggactcgctcttccaggcgcccacggggca 5757

                                                                        
Query: 329  cggcacccacgaggccgtcctcagctcctacgagtacgtcagccagggcctgcggaagta 388
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5758 cggcacccacgaggccgtcctcagctcctacgagtacgtcagccagggcctgcggaagta 5817

                                      
Query: 389  cgacttcgacaacaccatgggaggct 414
            ||||||||||||||||||||||||||
Sbjct: 5818 cgacttcgacaacaccatgggaggct 5843



 Score =  230 bits (116), Expect = 3e-57
 Identities = 161/176 (91%)
 Strand = Plus / Plus

                                                                        
Query: 233  gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 292
            |||||||||||| || ||||| ||||| ||||||||||||||||||||  | ||||| ||
Sbjct: 2939 gtggaagggtctggcctacgacatctcggacgaccagcaggacatcactcgggggaaagg 2998

                                                                        
Query: 293  catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcag 352
            |||||||||||| || |||||||| |||| |||||||||||||||||||||| |||| ||
Sbjct: 2999 catcgtggactccctgttccaggcccccatgggcgacggcacccacgaggccatcctaag 3058

                                                                    
Query: 353  ctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgg 408
            ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3059 ctcctacgagtacatcagccagggcctgcggaagtacgacttcgacaacaccatgg 3114



 Score =  163 bits (82), Expect = 6e-37
 Identities = 89/90 (98%), Gaps = 1/90 (1%)
 Strand = Plus / Plus

                                                                        
Query: 1    gcacagccgcgcgcatccaccgttgctagcaaggtcgaccaagcagcacagagatggctg 60
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 5310 gcacagccgcgcgcatccaccgttg-tagcaaggtcgaccaagcagcacagagatggctg 5368

                                          
Query: 61   ctgccttctcctccaccgtcggggctccgg 90
            ||||||||||||||||||||||||||||||
Sbjct: 5369 ctgccttctcctccaccgtcggggctccgg 5398

---

>gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mRNA, 3' end
          Length = 1394

 Score =  466 bits (235), Expect = e-128
 Identities = 244/247 (98%)
 Strand = Plus / Plus

                                                                       
Query: 168 tccaaggccaacaggttcacagtcatggcagcggagaacatcgacgagaagaggaacacc 227
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   tccaaggccaacaggttcacagtcatggcagcggagaacatcgacgagaagaggaacacc 60

                                                                       
Query: 228 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 287
           ||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||
Sbjct: 61  gacaagtggaagggtcttgctaccgatatctccgacgaccagcaggacatcaccagaggg 120

                                                                       
Query: 288 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 347
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 180

                                                                       
Query: 348 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 407
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 240

                  
Query: 408 ggaggct 414
           |||||||
Sbjct: 241 ggaggct 247

---

>gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha form precursor (RCA1)
           mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1616

 Score =  260 bits (131), Expect = 3e-66
 Identities = 173/187 (92%)
 Strand = Plus / Plus

                                                                       
Query: 228 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 287
           |||||||||||||| || || ||||||||||||||||||||||||||||||||||| || 
Sbjct: 257 gacaagtggaagggcctcgcctacgatatctccgacgaccagcaggacatcaccaggggt 316

                                                                       
Query: 288 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 347
           ||||| ||||| ||||| || ||||||||||||| |||||| ||||||||||||||||||
Sbjct: 317 aagggtatcgtcgactccctgttccaggcgcccatgggcgatggcacccacgaggccgtc 376

                                                                       
Query: 348 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 407
           ||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||
Sbjct: 377 ctcagctcctacgagtacgtcagccagggcctcaagaagtacgacttcgacaacaccatg 436

                  
Query: 408 ggaggct 414
           |||||||
Sbjct: 437 ggaggct 443



 Score =  228 bits (115), Expect = 1e-56
 Identities = 139/147 (94%)
 Strand = Plus / Plus

                                                                       
Query: 50  agagatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaactt 109
           ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||
Sbjct: 76  agagatggctgctgccttctcctccaccgtcggagctccggcttccacgccgaccagctt 135

                                                                       
Query: 110 cctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctc 169
           |||||| || |||||||||||||||||||||||||| |||||||||||||||||||||| 
Sbjct: 136 cctcggcaacaagctcaagaagcaggtgacctcggcagtgaactaccatggcaagagctt 195

                                      
Query: 170 caaggccaacaggttcacagtcatggc 196
           |||||||||||||||||| ||||||||
Sbjct: 196 caaggccaacaggttcaccgtcatggc 222

---

>gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form precursor (RCA2)
           mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1646

 Score =  240 bits (121), Expect = 3e-60
 Identities = 170/187 (90%)
 Strand = Plus / Plus

                                                                       
Query: 228 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 287
           |||||||||||||| || || ||||||||||||||||||||||||||||||||||| || 
Sbjct: 247 gacaagtggaagggcctcgcctacgatatctccgacgaccagcaggacatcaccaggggt 306

                                                                       
Query: 288 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 347
           ||||| ||||| |||||  | ||||||||||||| |||||| || |||||||||||||||
Sbjct: 307 aagggtatcgtcgactccttgttccaggcgcccatgggcgatggnacccacgaggccgtc 366

                                                                       
Query: 348 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 407
           |||||||| |||||||||||||||||||||||   |||||||||||||||||||||||||
Sbjct: 367 ctcagctcntacgagtacgtcagccagggcctcaagaagtacgacttcgacaacaccatg 426

                  
Query: 408 ggaggct 414
           |||||||
Sbjct: 427 ggaggct 433



 Score =  222 bits (112), Expect = 7e-55
 Identities = 138/147 (93%)
 Strand = Plus / Plus

                                                                       
Query: 50  agagatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaactt 109
           ||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||| |||
Sbjct: 66  agagatggctgctgccttctcctccaccgtcggagctccggcttccacgccnaccagctt 125

                                                                       
Query: 110 cctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctc 169
           |||||| || |||||||||||||||||||||||||| |||||||||||||||||||||| 
Sbjct: 126 cctcggcaacaagctcaagaagcaggtgacctcggcagtgaactaccatggcaagagctt 185

                                      
Query: 170 caaggccaacaggttcacagtcatggc 196
           |||||||||||||||||| ||||||||
Sbjct: 186 caaggccaacaggttcaccgtcatggc 212

---

>gb|AF251264.1|AF251264 Triticum aestivum ribulose bisphosphate carboxylase activase B
           (RcaB) mRNA, complete cds; nuclear gene for chloroplast
           product
          Length = 1525

 Score =  230 bits (116), Expect = 3e-57
 Identities = 161/176 (91%)
 Strand = Plus / Plus

                                                                       
Query: 233 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 292
           |||||||||||| || ||||| |||||||| ||||||||||||||||| || ||||| ||
Sbjct: 217 gtggaagggtctcgcttacgacatctccgatgaccagcaggacatcacgagggggaaagg 276

                                                                       
Query: 293 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcag 352
           |||||||||||| || |||||||| |||| |||||||||||||||||||||| |||| ||
Sbjct: 277 catcgtggactccctgttccaggcccccatgggcgacggcacccacgaggccatcctgag 336

                                                                   
Query: 353 ctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgg 408
           ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct: 337 ctcctacgagtacatcagccagggcctgcgcaagtacgacttcgacaacaccatgg 392



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 72/83 (86%)
 Strand = Plus / Plus

                                                                       
Query: 53  gatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcct 112
           ||||||| |||| ||||| |||||||| || |||||||| || || ||||||| ||||||
Sbjct: 25  gatggcttctgctttctcgtccaccgttggagctccggcgtcgaccccgaccaccttcct 84

                                  
Query: 113 cgggaagaagctcaagaagcagg 135
           |||||||||| | ||||||||||
Sbjct: 85  cgggaagaaggtgaagaagcagg 107

---

>gb|M55448.1|BLYRCAB Hordeum vulgare rubisco activase (RcaB) mRNA, complete cds
          Length = 1656

 Score =  230 bits (116), Expect = 3e-57
 Identities = 161/176 (91%)
 Strand = Plus / Plus

                                                                       
Query: 233 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 292
           |||||||||||| || ||||| ||||| ||||||||||||||||||||  | ||||| ||
Sbjct: 370 gtggaagggtctggcctacgacatctcggacgaccagcaggacatcactcgggggaaagg 429

                                                                       
Query: 293 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcag 352
           |||||||||||| || |||||||| |||| |||||||||||||||||||||| |||| ||
Sbjct: 430 catcgtggactccctgttccaggcccccatgggcgacggcacccacgaggccatcctaag 489

                                                                   
Query: 353 ctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgg 408
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 ctcctacgagtacatcagccagggcctgcggaagtacgacttcgacaacaccatgg 545

---

>gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carboxylase/oxygenase
           activase (rca) mRNA, complete cds
          Length = 1675

 Score =  212 bits (107), Expect = 7e-52
 Identities = 167/187 (89%)
 Strand = Plus / Plus

                                                                       
Query: 228 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 287
           |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 212 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 271

                                                                       
Query: 288 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 347
           |||||  |||| ||||| || |||||||| |||||||| || ||||||||||||||||||
Sbjct: 272 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 331

                                                                       
Query: 348 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 407
           |||||||||||||||||| |||||||||| ||  | | ||||||||||||||||||||||
Sbjct: 332 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 391

                  
Query: 408 ggaggct 414
           |||||||
Sbjct: 392 ggaggct 398



 Score =  172 bits (87), Expect = 6e-40
 Identities = 123/135 (91%)
 Strand = Plus / Plus

                                                                       
Query: 52  agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 111
           |||||||||||||||||||||||||||| || |||||||| || || |||||||||||||
Sbjct: 33  agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 92

                                                                       
Query: 112 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 171
           | ||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 93  tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 152

                          
Query: 172 aggccaacaggttca 186
           |   |||||||||||
Sbjct: 153 acatcaacaggttca 167

---

>dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for
           ribulose-bisphosphate carboxylase activase large isoform
           precursor protein, complete cds, clone: 13YPR038
          Length = 1558

 Score =  212 bits (107), Expect = 7e-52
 Identities = 167/187 (89%)
 Strand = Plus / Plus

                                                                       
Query: 228 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 287
           |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 204 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 263

                                                                       
Query: 288 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 347
           |||||  |||| ||||| || |||||||| |||||||| || ||||||||||||||||||
Sbjct: 264 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 323

                                                                       
Query: 348 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 407
           |||||||||||||||||| |||||||||| ||  | | ||||||||||||||||||||||
Sbjct: 324 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 383

                  
Query: 408 ggaggct 414
           |||||||
Sbjct: 384 ggaggct 390



 Score =  172 bits (87), Expect = 6e-40
 Identities = 123/135 (91%)
 Strand = Plus / Plus

                                                                       
Query: 52  agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 111
           |||||||||||||||||||||||||||| || |||||||| || || |||||||||||||
Sbjct: 25  agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 84

                                                                       
Query: 112 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 171
           | ||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 85  tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 144

                          
Query: 172 aggccaacaggttca 186
           |   |||||||||||
Sbjct: 145 acatcaacaggttca 159

---

>dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F01, full
           insert sequence
          Length = 1721

 Score =  212 bits (107), Expect = 7e-52
 Identities = 167/187 (89%)
 Strand = Plus / Plus

                                                                       
Query: 228 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 287
           |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 252 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 311

                                                                       
Query: 288 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 347
           |||||  |||| ||||| || |||||||| |||||||| || ||||||||||||||||||
Sbjct: 312 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 371

                                                                       
Query: 348 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 407
           |||||||||||||||||| |||||||||| ||  | | ||||||||||||||||||||||
Sbjct: 372 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 431

                  
Query: 408 ggaggct 414
           |||||||
Sbjct: 432 ggaggct 438



 Score =  172 bits (87), Expect = 6e-40
 Identities = 123/135 (91%)
 Strand = Plus / Plus

                                                                       
Query: 52  agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 111
           |||||||||||||||||||||||||||| || |||||||| || || |||||||||||||
Sbjct: 73  agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 132

                                                                       
Query: 112 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 171
           | ||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 133 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 192

                          
Query: 172 aggccaacaggttca 186
           |   |||||||||||
Sbjct: 193 acatcaacaggttca 207

---

>dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C24, full
           insert sequence
          Length = 1680

 Score =  212 bits (107), Expect = 7e-52
 Identities = 167/187 (89%)
 Strand = Plus / Plus

                                                                       
Query: 228 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 287
           |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 241 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 300

                                                                       
Query: 288 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 347
           |||||  |||| ||||| || |||||||| |||||||| || ||||||||||||||||||
Sbjct: 301 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 360

                                                                       
Query: 348 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 407
           |||||||||||||||||| |||||||||| ||  | | ||||||||||||||||||||||
Sbjct: 361 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 420

                  
Query: 408 ggaggct 414
           |||||||
Sbjct: 421 ggaggct 427



 Score =  172 bits (87), Expect = 6e-40
 Identities = 123/135 (91%)
 Strand = Plus / Plus

                                                                       
Query: 52  agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 111
           |||||||||||||||||||||||||||| || |||||||| || || |||||||||||||
Sbjct: 62  agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 121

                                                                       
Query: 112 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 171
           | ||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 122 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 181

                          
Query: 172 aggccaacaggttca 186
           |   |||||||||||
Sbjct: 182 acatcaacaggttca 196

---

>dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E04, full
           insert sequence
          Length = 1691

 Score =  212 bits (107), Expect = 7e-52
 Identities = 167/187 (89%)
 Strand = Plus / Plus

                                                                       
Query: 228 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 287
           |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 240 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 299

                                                                       
Query: 288 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 347
           |||||  |||| ||||| || |||||||| |||||||| || ||||||||||||||||||
Sbjct: 300 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 359

                                                                       
Query: 348 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 407
           |||||||||||||||||| |||||||||| ||  | | ||||||||||||||||||||||
Sbjct: 360 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 419

                  
Query: 408 ggaggct 414
           |||||||
Sbjct: 420 ggaggct 426



 Score =  172 bits (87), Expect = 6e-40
 Identities = 123/135 (91%)
 Strand = Plus / Plus

                                                                       
Query: 52  agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 111
           |||||||||||||||||||||||||||| || |||||||| || || |||||||||||||
Sbjct: 61  agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 120

                                                                       
Query: 112 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 171
           | ||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 121 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 180

                          
Query: 172 aggccaacaggttca 186
           |   |||||||||||
Sbjct: 181 acatcaacaggttca 195

---

>dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D05, full
           insert sequence
          Length = 1470

 Score =  212 bits (107), Expect = 7e-52
 Identities = 167/187 (89%)
 Strand = Plus / Plus

                                                                       
Query: 228 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 287
           |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 24  gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 83

                                                                       
Query: 288 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 347
           |||||  |||| ||||| || |||||||| |||||||| || ||||||||||||||||||
Sbjct: 84  aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 143

                                                                       
Query: 348 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 407
           |||||||||||||||||| |||||||||| ||  | | ||||||||||||||||||||||
Sbjct: 144 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 203

                  
Query: 408 ggaggct 414
           |||||||
Sbjct: 204 ggaggct 210

---

>dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase small isoform
           precursor, complete cds
          Length = 1706

 Score =  212 bits (107), Expect = 7e-52
 Identities = 167/187 (89%)
 Strand = Plus / Plus

                                                                       
Query: 228 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 287
           |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 245 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 304

                                                                       
Query: 288 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 347
           |||||  |||| ||||| || |||||||| |||||||| || ||||||||||||||||||
Sbjct: 305 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 364

                                                                       
Query: 348 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 407
           |||||||||||||||||| |||||||||| ||  | | ||||||||||||||||||||||
Sbjct: 365 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 424

                  
Query: 408 ggaggct 414
           |||||||
Sbjct: 425 ggaggct 431



 Score =  165 bits (83), Expect = 1e-37
 Identities = 122/135 (90%)
 Strand = Plus / Plus

                                                                       
Query: 52  agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 111
           |||||||||||||||||||||||||||| || |||||||| || || |||||||||||||
Sbjct: 66  agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 125

                                                                       
Query: 112 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 171
           | ||||||||||| || ||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 126 tggggaagaagctgaaaaagcaggtgacatcggcggtgaactaccatggcaagagctcca 185

                          
Query: 172 aggccaacaggttca 186
           |   |||||||||||
Sbjct: 186 acatcaacaggttca 200

---

>dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform
           precursor, complete cds
          Length = 1623

 Score =  212 bits (107), Expect = 7e-52
 Identities = 167/187 (89%)
 Strand = Plus / Plus

                                                                       
Query: 228 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 287
           |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 239 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 298

                                                                       
Query: 288 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 347
           |||||  |||| ||||| || |||||||| |||||||| || ||||||||||||||||||
Sbjct: 299 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 358

                                                                       
Query: 348 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 407
           |||||||||||||||||| |||||||||| ||  | | ||||||||||||||||||||||
Sbjct: 359 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 418

                  
Query: 408 ggaggct 414
           |||||||
Sbjct: 419 ggaggct 425



 Score =  172 bits (87), Expect = 6e-40
 Identities = 123/135 (91%)
 Strand = Plus / Plus

                                                                       
Query: 52  agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 111
           |||||||||||||||||||||||||||| || |||||||| || || |||||||||||||
Sbjct: 60  agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 119

                                                                       
Query: 112 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 171
           | ||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 120 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 179

                          
Query: 172 aggccaacaggttca 186
           |   |||||||||||
Sbjct: 180 acatcaacaggttca 194

---

>gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0003C04
              map S10003, complete sequence
          Length = 119238

 Score =  176 bits (89), Expect = 4e-41
 Identities = 134/149 (89%)
 Strand = Plus / Minus

                                                                          
Query: 228    gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 287
              |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 109706 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 109647

                                                                          
Query: 288    aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 347
              |||||  |||| ||||| || |||||||| |||||||| || ||||||||||||||||||
Sbjct: 109646 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 109587

                                           
Query: 348    ctcagctcctacgagtacgtcagccaggg 376
              |||||||||||||||||| ||||||||||
Sbjct: 109586 ctcagctcctacgagtacctcagccaggg 109558



 Score =  125 bits (63), Expect = 1e-25
 Identities = 99/111 (89%)
 Strand = Plus / Minus

                                                                          
Query: 233    gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 292
              ||||||||| || |||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 113205 gtggaagggactcgcgtacgacatctccgacgaccagcaggacatcaccagggggaaggg 113146

                                                                 
Query: 293    catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggc 343
              | |||| ||||| || |||||||| |||| ||| || ||||||||||||||
Sbjct: 113145 cctcgtcgactccctgttccaggctcccatgggtgatggcacccacgaggc 113095



 Score =  119 bits (60), Expect = 7e-24
 Identities = 81/88 (92%)
 Strand = Plus / Minus

                                                                          
Query: 99     ccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccat 158
              |||||||||||||| ||||||||||| |||||||||||||| ||||| ||||||||||||
Sbjct: 109838 ccgaccaacttcctggggaagaagctgaagaagcaggtgacatcggcggtgaactaccat 109779

                                          
Query: 159    ggcaagagctccaaggccaacaggttca 186
              ||||||||||||||   |||||||||||
Sbjct: 109778 ggcaagagctccaacatcaacaggttca 109751



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 37/39 (94%)
 Strand = Plus / Minus

                                                     
Query: 52     agatggctgctgccttctcctccaccgtcggggctccgg 90
              |||||||||||||||||||||||||||| || |||||||
Sbjct: 109984 agatggctgctgccttctcctccaccgttggagctccgg 109946



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 29/29 (100%)
 Strand = Plus / Minus

                                           
Query: 386    gtacgacttcgacaacaccatgggaggct 414
              |||||||||||||||||||||||||||||
Sbjct: 109435 gtacgacttcgacaacaccatgggaggct 109407

---

>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0026K20 map S10559, complete sequence
          Length = 115996

 Score =  176 bits (89), Expect = 4e-41
 Identities = 134/149 (89%)
 Strand = Plus / Minus

                                                                         
Query: 228   gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 287
             |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 31583 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 31524

                                                                         
Query: 288   aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 347
             |||||  |||| ||||| || |||||||| |||||||| || ||||||||||||||||||
Sbjct: 31523 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 31464

                                          
Query: 348   ctcagctcctacgagtacgtcagccaggg 376
             |||||||||||||||||| ||||||||||
Sbjct: 31463 ctcagctcctacgagtacctcagccaggg 31435



 Score =  125 bits (63), Expect = 1e-25
 Identities = 99/111 (89%)
 Strand = Plus / Minus

                                                                         
Query: 233   gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 292
             ||||||||| || |||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 35082 gtggaagggactcgcgtacgacatctccgacgaccagcaggacatcaccagggggaaggg 35023

                                                                
Query: 293   catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggc 343
             | |||| ||||| || |||||||| |||| ||| || ||||||||||||||
Sbjct: 35022 cctcgtcgactccctgttccaggctcccatgggtgatggcacccacgaggc 34972



 Score =  119 bits (60), Expect = 7e-24
 Identities = 81/88 (92%)
 Strand = Plus / Minus

                                                                         
Query: 99    ccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccat 158
             |||||||||||||| ||||||||||| |||||||||||||| ||||| ||||||||||||
Sbjct: 31715 ccgaccaacttcctggggaagaagctgaagaagcaggtgacatcggcggtgaactaccat 31656

                                         
Query: 159   ggcaagagctccaaggccaacaggttca 186
             ||||||||||||||   |||||||||||
Sbjct: 31655 ggcaagagctccaacatcaacaggttca 31628



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 37/39 (94%)
 Strand = Plus / Minus

                                                    
Query: 52    agatggctgctgccttctcctccaccgtcggggctccgg 90
             |||||||||||||||||||||||||||| || |||||||
Sbjct: 31861 agatggctgctgccttctcctccaccgttggagctccgg 31823



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 29/29 (100%)
 Strand = Plus / Minus

                                          
Query: 386   gtacgacttcgacaacaccatgggaggct 414
             |||||||||||||||||||||||||||||
Sbjct: 31312 gtacgacttcgacaacaccatgggaggct 31284

---

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  176 bits (89), Expect = 4e-41
 Identities = 134/149 (89%)
 Strand = Plus / Minus

                                                                            
Query: 228      gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 287
                |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 28304845 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 28304786

                                                                            
Query: 288      aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 347
                |||||  |||| ||||| || |||||||| |||||||| || ||||||||||||||||||
Sbjct: 28304785 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 28304726

                                             
Query: 348      ctcagctcctacgagtacgtcagccaggg 376
                |||||||||||||||||| ||||||||||
Sbjct: 28304725 ctcagctcctacgagtacctcagccaggg 28304697



 Score =  125 bits (63), Expect = 1e-25
 Identities = 99/111 (89%)
 Strand = Plus / Minus

                                                                            
Query: 233      gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 292
                ||||||||| || |||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 28308344 gtggaagggactcgcgtacgacatctccgacgaccagcaggacatcaccagggggaaggg 28308285

                                                                   
Query: 293      catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggc 343
                | |||| ||||| || |||||||| |||| ||| || ||||||||||||||
Sbjct: 28308284 cctcgtcgactccctgttccaggctcccatgggtgatggcacccacgaggc 28308234



 Score =  119 bits (60), Expect = 7e-24
 Identities = 81/88 (92%)
 Strand = Plus / Minus

                                                                            
Query: 99       ccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccat 158
                |||||||||||||| ||||||||||| |||||||||||||| ||||| ||||||||||||
Sbjct: 28304977 ccgaccaacttcctggggaagaagctgaagaagcaggtgacatcggcggtgaactaccat 28304918

                                            
Query: 159      ggcaagagctccaaggccaacaggttca 186
                ||||||||||||||   |||||||||||
Sbjct: 28304917 ggcaagagctccaacatcaacaggttca 28304890



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 37/39 (94%)
 Strand = Plus / Minus

                                                       
Query: 52       agatggctgctgccttctcctccaccgtcggggctccgg 90
                |||||||||||||||||||||||||||| || |||||||
Sbjct: 28305123 agatggctgctgccttctcctccaccgttggagctccgg 28305085



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 29/29 (100%)
 Strand = Plus / Minus

                                             
Query: 386      gtacgacttcgacaacaccatgggaggct 414
                |||||||||||||||||||||||||||||
Sbjct: 28304574 gtacgacttcgacaacaccatgggaggct 28304546

---

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  176 bits (89), Expect = 4e-41
 Identities = 134/149 (89%)
 Strand = Plus / Minus

                                                                            
Query: 228      gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 287
                |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 28287294 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 28287235

                                                                            
Query: 288      aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 347
                |||||  |||| ||||| || |||||||| |||||||| || ||||||||||||||||||
Sbjct: 28287234 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 28287175

                                             
Query: 348      ctcagctcctacgagtacgtcagccaggg 376
                |||||||||||||||||| ||||||||||
Sbjct: 28287174 ctcagctcctacgagtacctcagccaggg 28287146



 Score =  125 bits (63), Expect = 1e-25
 Identities = 99/111 (89%)
 Strand = Plus / Minus

                                                                            
Query: 233      gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 292
                ||||||||| || |||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 28290793 gtggaagggactcgcgtacgacatctccgacgaccagcaggacatcaccagggggaaggg 28290734

                                                                   
Query: 293      catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggc 343
                | |||| ||||| || |||||||| |||| ||| || ||||||||||||||
Sbjct: 28290733 cctcgtcgactccctgttccaggctcccatgggtgatggcacccacgaggc 28290683



 Score =  119 bits (60), Expect = 7e-24
 Identities = 81/88 (92%)
 Strand = Plus / Minus

                                                                            
Query: 99       ccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccat 158
                |||||||||||||| ||||||||||| |||||||||||||| ||||| ||||||||||||
Sbjct: 28287426 ccgaccaacttcctggggaagaagctgaagaagcaggtgacatcggcggtgaactaccat 28287367

                                            
Query: 159      ggcaagagctccaaggccaacaggttca 186
                ||||||||||||||   |||||||||||
Sbjct: 28287366 ggcaagagctccaacatcaacaggttca 28287339



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 37/39 (94%)
 Strand = Plus / Minus

                                                       
Query: 52       agatggctgctgccttctcctccaccgtcggggctccgg 90
                |||||||||||||||||||||||||||| || |||||||
Sbjct: 28287572 agatggctgctgccttctcctccaccgttggagctccgg 28287534



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 29/29 (100%)
 Strand = Plus / Minus

                                             
Query: 386      gtacgacttcgacaacaccatgggaggct 414
                |||||||||||||||||||||||||||||
Sbjct: 28287023 gtacgacttcgacaacaccatgggaggct 28286995

---

>dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F04, full
           insert sequence
          Length = 1682

 Score =  172 bits (87), Expect = 6e-40
 Identities = 123/135 (91%)
 Strand = Plus / Plus

                                                                       
Query: 52  agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 111
           |||||||||||||||||||||||||||| || |||||||| || || |||||||||||||
Sbjct: 61  agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 120

                                                                       
Query: 112 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 171
           | ||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 121 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 180

                          
Query: 172 aggccaacaggttca 186
           |   |||||||||||
Sbjct: 181 acatcaacaggttca 195



 Score = 89.7 bits (45), Expect = 7e-15
 Identities = 78/89 (87%)
 Strand = Plus / Plus

                                                                       
Query: 228 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 287
           |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 240 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 299

                                        
Query: 288 aagggcatcgtggactcgctcttccaggc 316
           |||||  |||| ||||| || ||||||||
Sbjct: 300 aagggtttcgtcgactcccttttccaggc 328



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 57/63 (90%)
 Strand = Plus / Plus

                                                                       
Query: 352 gctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggag 411
           |||||||||||||| |||||||||| ||  | | ||||||||||||||||||||||||||
Sbjct: 327 gctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatgggag 386

              
Query: 412 gct 414
           |||
Sbjct: 387 gct 389

---

>gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/oxygenase activase
           precursor (rca1) mRNA, complete cds
          Length = 1424

 Score =  133 bits (67), Expect = 5e-28
 Identities = 130/151 (86%)
 Strand = Plus / Plus

                                                                       
Query: 228 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 287
           |||| ||||||||| || || ||||| ||||| ||||||||||||||||||||||| || 
Sbjct: 213 gacaggtggaagggcctggcctacgacatctcggacgaccagcaggacatcaccaggggc 272

                                                                       
Query: 288 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 347
           |||||| |||| |||   |||||||||||||| | ||| |||||||||||||  ||||| 
Sbjct: 273 aagggcctcgtcgacaacctcttccaggcgcctatgggggacggcacccacgtcgccgtg 332

                                          
Query: 348 ctcagctcctacgagtacgtcagccagggcc 378
           |||||||||||||| ||| ||||||||||||
Sbjct: 333 ctcagctcctacgactacatcagccagggcc 363



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 107/127 (84%), Gaps = 9/127 (7%)
 Strand = Plus / Plus

                                                                       
Query: 54  atggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaa------c 107
           ||||| || |||||||||||||||||||| |||||||| || || |||||||       |
Sbjct: 21  atggcggccgccttctcctccaccgtcggagctccggcctccaccccgaccaggagcagc 80

                                                                       
Query: 108 ttcctcgggaagaagctcaagaagc---aggtgacctcggccgtgaactaccatggcaag 164
           |||||||||||||||||||| ||||   ||||| || ||||||||| |||||||||||||
Sbjct: 81  ttcctcgggaagaagctcaacaagccgcaggtgtccgcggccgtgacctaccatggcaag 140

                  
Query: 165 agctcca 171
           |||||||
Sbjct: 141 agctcca 147

---

>gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase (rca4) mRNA, partial cds
          Length = 1674

 Score =  111 bits (56), Expect = 2e-21
 Identities = 95/108 (87%)
 Strand = Plus / Plus

                                                                       
Query: 264 gaccagcaggacatcaccagagggaagggcatcgtggactcgctcttccaggcgcccacg 323
           |||||||||||||||||||| ||||||||||| || ||||| || |||||||| |||| |
Sbjct: 235 gaccagcaggacatcaccagggggaagggcatggtcgactccctgttccaggctcccatg 294

                                                           
Query: 324 ggcgacggcacccacgaggccgtcctcagctcctacgagtacgtcagc 371
           |||||||| |||||| |  ||||||| ||||||||||||||| |||||
Sbjct: 295 ggcgacggaacccacaaccccgtcctgagctcctacgagtacatcagc 342

---

>gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase (rca3) mRNA, partial cds
          Length = 1494

 Score =  111 bits (56), Expect = 2e-21
 Identities = 95/108 (87%)
 Strand = Plus / Plus

                                                                       
Query: 264 gaccagcaggacatcaccagagggaagggcatcgtggactcgctcttccaggcgcccacg 323
           |||||||||||||||||||| ||||||||||| || ||||| || |||||||| |||| |
Sbjct: 98  gaccagcaggacatcaccagggggaagggcatggtcgactccctgttccaggctcccatg 157

                                                           
Query: 324 ggcgacggcacccacgaggccgtcctcagctcctacgagtacgtcagc 371
           |||||||| |||||| |  ||||||| ||||||||||||||| |||||
Sbjct: 158 ggcgacggaacccacaaccccgtcctgagctcctacgagtacatcagc 205

---

>gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase (rca1) mRNA, partial cds
          Length = 1597

 Score =  111 bits (56), Expect = 2e-21
 Identities = 95/108 (87%)
 Strand = Plus / Plus

                                                                       
Query: 264 gaccagcaggacatcaccagagggaagggcatcgtggactcgctcttccaggcgcccacg 323
           |||||||||||||||||||| ||||||||||| || ||||| || |||||||| |||| |
Sbjct: 128 gaccagcaggacatcaccagggggaagggcatggtcgactccctgttccaggctcccatg 187

                                                           
Query: 324 ggcgacggcacccacgaggccgtcctcagctcctacgagtacgtcagc 371
           |||||||| |||||| |  ||||||| ||||||||||||||| |||||
Sbjct: 188 ggcgacggaacccacaaccccgtcctgagctcctacgagtacatcagc 235

---

>gb|AY110044.1| Zea mays CL1146_1 mRNA sequence
          Length = 1750

 Score =  111 bits (56), Expect = 2e-21
 Identities = 126/151 (83%)
 Strand = Plus / Plus

                                                                       
Query: 228 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 287
           |||| ||||||||| || || ||||| ||||| ||||||||||||||||||||||| || 
Sbjct: 213 gacaggtggaagggcctggcctacgacatctcggacgaccagcaggacatcaccaggggc 272

                                                                       
Query: 288 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 347
           |||||| |||| |||   |||||||||||||| |      ||||||||||||  ||||| 
Sbjct: 273 aagggcctcgtcgacaacctcttccaggcgcctatnnnnnacggcacccacgtcgccgtg 332

                                          
Query: 348 ctcagctcctacgagtacgtcagccagggcc 378
           |||||||||||||| ||| ||||||||||||
Sbjct: 333 ctcagctcctacgactacatcagccagggcc 363



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 107/127 (84%), Gaps = 9/127 (7%)
 Strand = Plus / Plus

                                                                       
Query: 54  atggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaa------c 107
           ||||| || |||||||||||||||||||| |||||||| || || |||||||       |
Sbjct: 21  atggcggccgccttctcctccaccgtcggagctccggcctccaccccgaccaggagcagc 80

                                                                       
Query: 108 ttcctcgggaagaagctcaagaagc---aggtgacctcggccgtgaactaccatggcaag 164
           |||||||||||||||||||| ||||   ||||| || ||||||||| |||||||||||||
Sbjct: 81  ttcctcgggaagaagctcaacaagccgcaggtgtccgcggccgtgacctaccatggcaag 140

                  
Query: 165 agctcca 171
           |||||||
Sbjct: 141 agctcca 147

---

>gb|AF329934.1|AF329934 Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase
           activase 1 mRNA, complete cds
          Length = 1559

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 50/56 (89%)
 Strand = Plus / Plus

                                                                   
Query: 234 tggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaa 289
           |||||||||||||| || ||||||||||| ||||| || ||||| |||||||||||
Sbjct: 280 tggaagggtcttgcttatgatatctccgatgaccaacaagacattaccagagggaa 335

---

>emb|Z21794.1|MDRBSCACA M.domestica ribulose-1,5-bisphosphate carboxylase/oxygenase
           activase mRNA
          Length = 1853

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 52/60 (86%)
 Strand = Plus / Plus

                                                                       
Query: 257 ctccgacgaccagcaggacatcaccagagggaagggcatcgtggactcgctcttccaggc 316
           |||||||||||| || |||||||| ||||| ||||| |  |||||||| |||||||||||
Sbjct: 319 ctccgacgaccaacaagacatcacaagaggaaagggtaaggtggactccctcttccaggc 378

---

>gb|AF126870.2|AF126870 Vigna radiata rubisco activase (Rca) mRNA, complete cds; nuclear
           gene for chloroplast product
          Length = 1671

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 51/59 (86%)
 Strand = Plus / Plus

                                                                      
Query: 234 tggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 292
           ||||||||||| || ||||||||||| || ||||| || |||||||| || ||||||||
Sbjct: 295 tggaagggtctggcctacgatatctctgatgaccaacaagacatcacaagggggaaggg 353

---

>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 46.1 bits (23), Expect = 0.090
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 259     ccgacgaccagcaggacatcacc 281
               |||||||||||||||||||||||
Sbjct: 1452088 ccgacgaccagcaggacatcacc 1452066

---

>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome
          Length = 5650368

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 301     actcgctcttccaggcgcccac 322
               ||||||||||||||||||||||
Sbjct: 2553524 actcgctcttccaggcgcccac 2553503

---

>gb|AE015925.1| Chlamydophila caviae GPIC, complete genome
          Length = 1173390

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 116    gaagaagctcaagaagcaggtg 137
              ||||||||||||||||||||||
Sbjct: 632957 gaagaagctcaagaagcaggtg 632978

---

>emb|CR701838.2|CNS0G4HM Tetraodon nigroviridis full-length cDNA
          Length = 929

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 44  cagcacagagatggctgctgc 64
           |||||||||||||||||||||
Sbjct: 531 cagcacagagatggctgctgc 511

---

>emb|CR686472.2|CNS0FSMS Tetraodon nigroviridis full-length cDNA
          Length = 939

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 44  cagcacagagatggctgctgc 64
           |||||||||||||||||||||
Sbjct: 541 cagcacagagatggctgctgc 521

---

>emb|CR681817.2|CNS0FP1H Tetraodon nigroviridis full-length cDNA
          Length = 992

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 44  cagcacagagatggctgctgc 64
           |||||||||||||||||||||
Sbjct: 595 cagcacagagatggctgctgc 575

---

>emb|CR680161.1|CNS0FNRH Tetraodon nigroviridis full-length cDNA
          Length = 1318

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 44  cagcacagagatggctgctgc 64
           |||||||||||||||||||||
Sbjct: 932 cagcacagagatggctgctgc 912

---

>emb|CR675309.2|CNS0FK1F Tetraodon nigroviridis full-length cDNA
          Length = 1006

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 44  cagcacagagatggctgctgc 64
           |||||||||||||||||||||
Sbjct: 609 cagcacagagatggctgctgc 589

---

>gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase (rca2) mRNA, partial cds
          Length = 1436

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 343 ccgtcctcagctcctacgagtacgtcagc 371
           ||||||| ||||||||||||||| |||||
Sbjct: 13  ccgtcctgagctcctacgagtacatcagc 41

---

>gb|CP000002.2| Bacillus licheniformis ATCC 14580, complete genome
          Length = 4222334

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 191     catggcagcggagaacatcg 210
               ||||||||||||||||||||
Sbjct: 1379894 catggcagcggagaacatcg 1379875

---

>gb|AY820769.1| Homo sapiens HCV NS5A trans-regulated protein 13 mRNA, complete cds
          Length = 2103

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 55  tggctgctgccttctcctcc 74
           ||||||||||||||||||||
Sbjct: 715 tggctgctgccttctcctcc 696

---

>gb|AE010322.1| Methanopyrus kandleri AV19 section 21 of 157 of the complete genome
          Length = 10732

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 255  atctccgacgaccagcaggacatc 278
            |||||| |||||||||||||||||
Sbjct: 8676 atctcccacgaccagcaggacatc 8653

---

>gb|CP000110.1| Synechococcus sp. CC9605, complete genome
          Length = 2510659

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 195    gcagcggagaacatcgacga 214
              ||||||||||||||||||||
Sbjct: 173412 gcagcggagaacatcgacga 173393

---

>ref|XM_520373.1| PREDICTED: Pan troglodytes LOC464867 (LOC464867), mRNA
          Length = 1685

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 318  cccacgggcgacggcacccacgag 341
            ||||||||||||| ||||||||||
Sbjct: 1369 cccacgggcgacgtcacccacgag 1392

---

>ref|NM_001003053.1| Canis familiaris androgen receptor (dihydrotestosterone receptor;
            testicular feminization; spinal and bulbar muscular
            atrophy; Kennedy disease) (AR), mRNA
          Length = 3577

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 160  gcaagagctccaaggccaac 179
            ||||||||||||||||||||
Sbjct: 3271 gcaagagctccaaggccaac 3290

---

>ref|NM_004741.1| Homo sapiens nucleolar and coiled-body phosphoprotein 1 (NOLC1),
           mRNA
          Length = 2502

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 55  tggctgctgccttctcctcc 74
           ||||||||||||||||||||
Sbjct: 766 tggctgctgccttctcctcc 747

---

>gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, complete sequence
          Length = 384518

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 61     ctgccttctcctccaccgtc 80
              ||||||||||||||||||||
Sbjct: 240861 ctgccttctcctccaccgtc 240842

---

>gb|AE017333.1| Bacillus licheniformis DSM 13, complete genome
          Length = 4222645

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 191     catggcagcggagaacatcg 210
               ||||||||||||||||||||
Sbjct: 1380755 catggcagcggagaacatcg 1380736

---

>ref|NM_017617.2| Homo sapiens Notch homolog 1, translocation-associated (Drosophila)
           (NOTCH1), mRNA
          Length = 9312

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 318 cccacgggcgacggcacccacgag 341
           ||||||||||||| ||||||||||
Sbjct: 703 cccacgggcgacgtcacccacgag 726

---

>gb|BC001883.1| Homo sapiens nucleolar and coiled-body phosphoprotein 1, mRNA (cDNA
           clone MGC:1494 IMAGE:3533568), complete cds
          Length = 2464

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 55  tggctgctgccttctcctcc 74
           ||||||||||||||||||||
Sbjct: 722 tggctgctgccttctcctcc 703

---

>ref|XM_582842.2| PREDICTED: Bos taurus similar to chromodomain helicase DNA binding
            protein 4 (LOC506402), mRNA
          Length = 7219

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 58   ctgctgccttctcctccacc 77
            ||||||||||||||||||||
Sbjct: 5008 ctgctgccttctcctccacc 4989

---

>gb|DQ483716.1| Gymnogyps californianus clone 139F microsatellite sequence
          Length = 457

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 58 ctgctgccttctcctccacc 77
          ||||||||||||||||||||
Sbjct: 65 ctgctgccttctcctccacc 46

---

>gb|DQ483952.1| Gymnogyps californianus clone 118G microsatellite sequence
          Length = 470

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 58 ctgctgccttctcctccacc 77
          ||||||||||||||||||||
Sbjct: 65 ctgctgccttctcctccacc 46

---

>ref|XM_381225.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG01049.1)
            partial mRNA
          Length = 22443

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 116  gaagaagctcaagaagcagg 135
            ||||||||||||||||||||
Sbjct: 8385 gaagaagctcaagaagcagg 8404

---

>gb|BC006769.2| Homo sapiens nucleolar and coiled-body phosphoprotein 1, mRNA (cDNA
           clone MGC:5049 IMAGE:2900024), complete cds
          Length = 3237

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 55  tggctgctgccttctcctcc 74
           ||||||||||||||||||||
Sbjct: 232 tggctgctgccttctcctcc 213

---

>emb|AL592301.14| Human DNA sequence from clone RP11-413M3 on chromosome 9 Contains the 3'
              end of the gene for activator of G-protein signalling 3
              (AGS3), two novel genes, the CARD9 gene for caspase
              recruitment domain family member 9, the SNAPC4 gene for a
              190kDa small nuclear RNA activating complex polypeptide 4, 
              the SDCCAG3 gene for serologically defined colon cancer
              antigen 3, the INPP5E gene for a 72kDa inositol
              polyphosphate-5-phosphatase, the gene for
              phosphatidylinositol polyphosphate 5-phosphatase type IV
              (PPI5PIV), a novel gene (KIAA0310), the 3' end of the
              NOTCH1 gene for Notch homolog 1 translocation-associated
              (Drosophila) and twenty CpG islands, complete sequence
          Length = 188462

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 318    cccacgggcgacggcacccacgag 341
              ||||||||||||| ||||||||||
Sbjct: 166513 cccacgggcgacgtcacccacgag 166490

---

>emb|AL500527.19| Human DNA sequence from clone RP11-302K17 on chromosome 10 Contains the
              gene for  Hermansky-Pudlak syndrome-6 protein (HPS6), two
              pseudogenes for  transcription elongation factor B (SIII),
              polypeptide 1, the LDB1 gene for LIM domain binding 1, a
              novel gene (KIAA0595), the NOLC1 gene for nucleolar and
              coiled-body phosphoprotein 1 and five CpG islands, complete
              sequence
          Length = 158434

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 55     tggctgctgccttctcctcc 74
              ||||||||||||||||||||
Sbjct: 101054 tggctgctgccttctcctcc 101035

---

>gb|BT009750.1| Synthetic construct Homo sapiens nucleolar and coiled-body
           phosphoprotein 1 mRNA, partial cds
          Length = 2103

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 55  tggctgctgccttctcctcc 74
           ||||||||||||||||||||
Sbjct: 715 tggctgctgccttctcctcc 696

---

>gb|AC104422.4| Homo sapiens chromosome 18, clone RP11-260B14, complete sequence
          Length = 147210

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 280   ccagagggaagggcatcgtg 299
             ||||||||||||||||||||
Sbjct: 35948 ccagagggaagggcatcgtg 35967

---

>emb|CR602162.1| full-length cDNA clone CS0DI026YK04 of Placenta Cot 25-normalized
           of Homo sapiens (human)
          Length = 1812

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 55  tggctgctgccttctcctcc 74
           ||||||||||||||||||||
Sbjct: 717 tggctgctgccttctcctcc 698

---

>dbj|AK056755.1| Homo sapiens cDNA FLJ32193 fis, clone PLACE6002345, highly similar
           to H.sapiens mRNA for nucleolar phosphoprotein p130
          Length = 2288

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 55  tggctgctgccttctcctcc 74
           ||||||||||||||||||||
Sbjct: 570 tggctgctgccttctcctcc 551

---

>gb|AC091237.6| Mus musculus Strain C57BL7/J Chromosome 14 RP23-470F15, complete sequence
          Length = 177104

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 48     acagagatggctgctgcctt 67
              ||||||||||||||||||||
Sbjct: 121162 acagagatggctgctgcctt 121143

---

>gb|AF197950.1| Canis familiaris androgen receptor (AR) mRNA, complete cds
          Length = 3577

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 160  gcaagagctccaaggccaac 179
            ||||||||||||||||||||
Sbjct: 3271 gcaagagctccaaggccaac 3290

---

>gb|AC100806.2| Homo sapiens chromosome 18, clone CTB-2341H11, complete sequence
          Length = 81641

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 280   ccagagggaagggcatcgtg 299
             ||||||||||||||||||||
Sbjct: 47211 ccagagggaagggcatcgtg 47230

---

>gb|AC154546.2| Mus musculus BAC clone RP23-431I7 from chromosome 16, complete sequence
          Length = 180261

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                      
Query: 31     aaggtcgaccaagcagcacagagatggctgctgccttctc 70
              |||||| |||||  ||||||| || |||||||||||||||
Sbjct: 111680 aaggtccaccaatgagcacagtgagggctgctgccttctc 111719

---

>gb|AF308602.1|AF308602 Homo sapiens NOTCH 1 (N1) mRNA, complete cds
          Length = 7693

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 318 cccacgggcgacggcacccacgag 341
           ||||||||||||| ||||||||||
Sbjct: 703 cccacgggcgacgtcacccacgag 726

---

>gb|AC019012.4|AC019012 Genomic Sequence For Arabidopsis thaliana Clone T3J11 From Chromosome
             V, complete sequence
          Length = 130299

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 170   caaggccaacaggttcacagtcat 193
             ||||||||||||||||| ||||||
Sbjct: 13824 caaggccaacaggttcagagtcat 13847

---

>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 251     cgatatctccgacgaccagc 270
               ||||||||||||||||||||
Sbjct: 4182002 cgatatctccgacgaccagc 4181983

---

>gb|AY891983.1| Synthetic construct Homo sapiens clone FLH024209.01L nucleolar and
           coiled-body phosphoprotein 1 (NOLC1) mRNA, partial cds
          Length = 2103

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 55  tggctgctgccttctcctcc 74
           ||||||||||||||||||||
Sbjct: 715 tggctgctgccttctcctcc 696

---

>gb|AC018660.1|AC018660 Genomic Sequence For Arabidopsis thaliana Clone F11P10, Chromosome V,
             complete sequence
          Length = 105589

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 170   caaggccaacaggttcacagtcat 193
             ||||||||||||||||| ||||||
Sbjct: 27506 caaggccaacaggttcagagtcat 27483

---

>gb|AC134613.5| Mus musculus BAC clone RP23-133J23 from 8, complete sequence
          Length = 187148

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 117   aagaagctcaagaagcaggt 136
             ||||||||||||||||||||
Sbjct: 44669 aagaagctcaagaagcaggt 44650

---

>gb|AC153897.4| Mus musculus 10 BAC RP23-119E2 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 209755

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 55    tggctgctgccttctcctcc 74
             ||||||||||||||||||||
Sbjct: 46900 tggctgctgccttctcctcc 46919

---

>dbj|D21262.1|HUMORFGA Homo sapiens KIAA0035 mRNA, partial cds
          Length = 3727

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 55  tggctgctgccttctcctcc 74
           ||||||||||||||||||||
Sbjct: 708 tggctgctgccttctcctcc 689

---

>dbj|AP003156.1| Mus musculus genomic DNA, chromosome 16q clone:RP21-56O15, complete
              sequences
          Length = 162128

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                      
Query: 31     aaggtcgaccaagcagcacagagatggctgctgccttctc 70
              |||||| |||||  ||||||| || |||||||||||||||
Sbjct: 108212 aaggtccaccaatgagcacagtgagggctgctgccttctc 108173

---

>gb|AE008692.1| Zymomonas mobilis subsp. mobilis ZM4, complete genome
          Length = 2056416

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 51     gagatggctgctgccttctcctcc 74
              ||||||||||||||||||| ||||
Sbjct: 472845 gagatggctgctgccttctgctcc 472822

---

>gb|M73980.1|HUMTAN1 Human TAN-1 mRNA (homologue of Drosophila Notch gene), 5' end
          Length = 7332

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 318 cccacgggcgacggcacccacgag 341
           ||||||||||||| ||||||||||
Sbjct: 703 cccacgggcgacgtcacccacgag 726

---

>emb|Z34289.1|HSNUCPP H.sapiens mRNA for nucleolar phosphoprotein p130
          Length = 2502

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 55  tggctgctgccttctcctcc 74
           ||||||||||||||||||||
Sbjct: 766 tggctgctgccttctcctcc 747


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,058,193
Number of Sequences: 3902068
Number of extensions: 3058193
Number of successful extensions: 58130
Number of sequences better than 10.0: 76
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 57785
Number of HSP's gapped (non-prelim): 340
length of query: 414
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 392
effective length of database: 17,147,199,772
effective search space: 6721702310624
effective search space used: 6721702310624
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

---