ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | baal12o18 |
|---|---|
| Clone Library Name | barley_pub |
>PSAF_HORVU (P13192) Photosystem I reaction center subunit III, chloroplast| precursor (Light-harvesting complex I 17 kDa protein) (PSI-F) Length = 235 Score = 128 bits (321), Expect = 4e-30 Identities = 62/64 (96%), Positives = 62/64 (96%) Frame = +3 Query: 3 GWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLVVXXA 182 GWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLVV A Sbjct: 172 GWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLVVDDA 231 Query: 183 DIGY 194 DIGY Sbjct: 232 DIGY 235
>PSAF_SPIOL (P12355) Photosystem I reaction center subunit III, chloroplast| precursor (Light-harvesting complex I 17 kDa protein) (PSI-F) Length = 231 Score = 91.3 bits (225), Expect = 6e-19 Identities = 41/56 (73%), Positives = 48/56 (85%) Frame = +3 Query: 3 GWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLV 170 GWIGWVGRSYLIA+ EKKP +EIIIDV LA+ ++ RGF WPVAAYREL+NG+LV Sbjct: 172 GWIGWVGRSYLIAIRDEKKPTQKEIIIDVPLASSLLFRGFSWPVAAYRELLNGELV 227
>PSAF_FLATR (P46486) Photosystem I reaction center subunit III, chloroplast| precursor (Light-harvesting complex I 17 kDa protein) (PSI-F) Length = 232 Score = 89.7 bits (221), Expect = 2e-18 Identities = 39/56 (69%), Positives = 47/56 (83%) Frame = +3 Query: 3 GWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLV 170 GWIGWVGRSYLIA+ EKKP +EIIIDV LA +++ RGF WPVAAYRE +NG+L+ Sbjct: 173 GWIGWVGRSYLIAIRDEKKPTQKEIIIDVPLATKLLFRGFSWPVAAYREYLNGELI 228
>PSAF_ODOSI (P49483) Photosystem I reaction center subunit III (PSI-F)| Length = 185 Score = 73.9 bits (180), Expect = 1e-13 Identities = 33/62 (53%), Positives = 44/62 (70%) Frame = +3 Query: 3 GWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLVVXXA 182 GWIGWVGR YL AVS K P EIII+V LA +I+ G+IWP++A++E I+ DLV Sbjct: 119 GWIGWVGRKYLRAVSTTKNPTESEIIINVPLALKIMTTGYIWPISAWQEFISNDLVALDE 178 Query: 183 DI 188 ++ Sbjct: 179 EV 180
>PSAF_PORPU (P51193) Photosystem I reaction center subunit III (PSI-F)| Length = 185 Score = 72.8 bits (177), Expect = 2e-13 Identities = 31/62 (50%), Positives = 43/62 (69%) Frame = +3 Query: 3 GWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLVVXXA 182 GWIGWVGR YL++V+ KP +EII+DV LA + + GF WP+AA++E +G L+ Sbjct: 119 GWIGWVGRGYLLSVAKTSKPTEKEIILDVPLAVKFMSSGFAWPLAAWQEFSSGQLIAPND 178 Query: 183 DI 188 DI Sbjct: 179 DI 180
>PSAF_SYNY3 (P29256) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 165 Score = 70.1 bits (170), Expect = 1e-12 Identities = 31/62 (50%), Positives = 44/62 (70%) Frame = +3 Query: 3 GWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLVVXXA 182 GWIGWVGRSYLI + K P M+E++I+V LA + + GF+WP+AA E +G LV+ + Sbjct: 99 GWIGWVGRSYLIEIRESKNPEMQEVVINVPLAIKKMLGGFLWPLAAVGEYTSGKLVMKDS 158 Query: 183 DI 188 +I Sbjct: 159 EI 160
>PSAF_SYNP6 (P31083) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 159 Score = 69.3 bits (168), Expect = 2e-12 Identities = 31/62 (50%), Positives = 42/62 (67%) Frame = +3 Query: 3 GWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLVVXXA 182 GWIGWVGRSYL A+ +K A +EI+IDV LA + GF WP+AA++E +G L+ Sbjct: 93 GWIGWVGRSYLQAIKSDKDAAGKEIVIDVPLAVKFSLTGFAWPLAAFQEFSSGKLLAKAD 152 Query: 183 DI 188 +I Sbjct: 153 EI 154
>PSAF_SYNEN (P0A402) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 164 Score = 68.2 bits (165), Expect = 5e-12 Identities = 32/62 (51%), Positives = 42/62 (67%) Frame = +3 Query: 3 GWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLVVXXA 182 GWIGWVGR+YLIAV + +EIIIDV LA + + GF WP+AA +EL +G+L Sbjct: 98 GWIGWVGRAYLIAVRNSGEANEKEIIIDVPLAIKCMLTGFAWPLAALKELASGELTAKDN 157 Query: 183 DI 188 +I Sbjct: 158 EI 159
>PSAF_SYNEL (P0A401) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 164 Score = 68.2 bits (165), Expect = 5e-12 Identities = 32/62 (51%), Positives = 42/62 (67%) Frame = +3 Query: 3 GWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLVVXXA 182 GWIGWVGR+YLIAV + +EIIIDV LA + + GF WP+AA +EL +G+L Sbjct: 98 GWIGWVGRAYLIAVRNSGEANEKEIIIDVPLAIKCMLTGFAWPLAALKELASGELTAKDN 157 Query: 183 DI 188 +I Sbjct: 158 EI 159
>PSAF_GUITH (O78457) Photosystem I reaction center subunit III (PSI-F)| Length = 183 Score = 67.8 bits (164), Expect = 7e-12 Identities = 30/62 (48%), Positives = 41/62 (66%) Frame = +3 Query: 3 GWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLVVXXA 182 GWIGWVGR+Y+ S KP +EIIIDV +A I G+IWP AA++E +G+L+ Sbjct: 117 GWIGWVGRNYVQFASQTDKPTEKEIIIDVPVALSFISTGYIWPFAAFKEFTSGNLIAKED 176 Query: 183 DI 188 +I Sbjct: 177 EI 178
>PSAF_ANAVT (P31091) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 164 Score = 65.9 bits (159), Expect = 3e-11 Identities = 29/62 (46%), Positives = 41/62 (66%) Frame = +3 Query: 3 GWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLVVXXA 182 GWIGWVGR+YL A+ + +EI +D+ LA II GF WP AA +EL++G+L + Sbjct: 98 GWIGWVGRAYLQAIKKDSDTEQKEIQLDLGLALPIIATGFAWPAAAVKELLSGELTAKDS 157 Query: 183 DI 188 +I Sbjct: 158 EI 159
>PSAF_ANASP (P58564) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 164 Score = 65.1 bits (157), Expect = 4e-11 Identities = 28/62 (45%), Positives = 41/62 (66%) Frame = +3 Query: 3 GWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLVVXXA 182 GWIGWVGR+YL A+ + +EI +D+ +A II GF WP AA +EL++G+L + Sbjct: 98 GWIGWVGRAYLQAIKKDSDTEQKEIQLDLGIALPIIATGFAWPAAAVKELLSGELTAKDS 157 Query: 183 DI 188 +I Sbjct: 158 EI 159
>PSAF_CHLRE (P12356) Photosystem I reaction center subunit III, chloroplast| precursor (Light-harvesting complex I 17 kDa protein) (PSI-F) (P21 protein) Length = 227 Score = 64.7 bits (156), Expect = 6e-11 Identities = 32/56 (57%), Positives = 41/56 (73%) Frame = +3 Query: 3 GWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLV 170 G+IG+VGR YLIAV GE KP +EIIIDV LA ++ +G WP+AA +EL G L+ Sbjct: 161 GYIGYVGRQYLIAVKGEAKPTDKEIIIDVPLATKLAWQGAGWPLAAVQELQRGTLL 216
>PSAF_CYAPA (P48115) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 186 Score = 60.8 bits (146), Expect = 8e-10 Identities = 27/62 (43%), Positives = 40/62 (64%) Frame = +3 Query: 3 GWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLVVXXA 182 G+IGW GRSYL AV+ +EIIID+ +A + + +GF+WP+AA +E +G L Sbjct: 120 GFIGWSGRSYLQAVAASDNSTEKEIIIDIPVALQSVSKGFVWPLAALQEFSSGKLTARDE 179 Query: 183 DI 188 +I Sbjct: 180 EI 181
>PSAF_CYACA (Q9TLW6) Photosystem I reaction center subunit III (PSI-F)| Length = 187 Score = 55.1 bits (131), Expect = 5e-08 Identities = 26/62 (41%), Positives = 34/62 (54%) Frame = +3 Query: 3 GWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLVVXXA 182 GWIGW G+ YL KP EIIID+ A + + GF WP+ A +E NG L+ Sbjct: 121 GWIGWAGKGYLQYSKTLTKPNENEIIIDLPRALKYMFSGFAWPILALKEFKNGSLLASND 180 Query: 183 DI 188 +I Sbjct: 181 EI 182
>PSAF_MASLA (O31127) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 165 Score = 54.3 bits (129), Expect = 8e-08 Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 1/63 (1%) Frame = +3 Query: 3 GWIGWVGRSYLIAVSGE-KKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLVVXX 179 GWIGWVGR+YL + + +EI I++ +A I+ GF WP AA +E ++G+L Sbjct: 98 GWIGWVGRAYLQTIKKQGSNVEQKEIQIELPIALPIMLSGFAWPAAAIKEFLSGELTAKD 157 Query: 180 ADI 188 +I Sbjct: 158 EEI 160
>PSAF_PROMA (Q9X7I4) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 183 Score = 52.0 bits (123), Expect = 4e-07 Identities = 27/55 (49%), Positives = 33/55 (60%) Frame = +3 Query: 3 GWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDL 167 G IGW GR YL A K PA EIIID LA + + +G WPV A ++ +GDL Sbjct: 116 GIIGWSGREYLRASKKTKNPAENEIIIDFALARQCLIKGAAWPVEANKQGRSGDL 170
>PSAF_GLOVI (Q7NH05) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 181 Score = 45.4 bits (106), Expect = 4e-05 Identities = 26/57 (45%), Positives = 32/57 (56%) Frame = +3 Query: 3 GWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLVV 173 G +GW GR YL E K EIIID+ A + + G IWPV A ELI+G + V Sbjct: 119 GALGWAGRLYL----AESKGPEDEIIIDLPKAIKCLLLGLIWPVQAIPELISGKIRV 171
>YHBP_ECO57 (Q8XA94) UPF0306 protein yhbP| Length = 147 Score = 28.9 bits (63), Expect = 3.5 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%) Frame = +3 Query: 198 LAAMRAWXASRSQVRWAVEDEG-LWCRSVW 284 L A+ W A + V W V+ EG LWC + + Sbjct: 4 LTAISRWLAKQHVVTWCVQQEGELWCANAF 33
>YHBP_ECOL6 (Q8FD95) UPF0306 protein yhbP| Length = 140 Score = 28.9 bits (63), Expect = 3.5 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%) Frame = +3 Query: 198 LAAMRAWXASRSQVRWAVEDEG-LWCRSVW 284 L A+ W A + V W V+ EG LWC + + Sbjct: 4 LTAISRWLAKQHVVTWCVQQEGELWCANAF 33
>YHBP_SHIFL (P67763) UPF0306 protein yhbP| Length = 147 Score = 28.5 bits (62), Expect = 4.6 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%) Frame = +3 Query: 198 LAAMRAWXASRSQVRWAVEDEG-LWCRSVW 284 L A+ W A + V W V+ EG LWC + + Sbjct: 4 LIAISRWLAKQHVVTWCVQQEGELWCANAF 33
>YHBP_ECOLI (P67762) UPF0306 protein yhbP| Length = 147 Score = 28.5 bits (62), Expect = 4.6 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%) Frame = +3 Query: 198 LAAMRAWXASRSQVRWAVEDEG-LWCRSVW 284 L A+ W A + V W V+ EG LWC + + Sbjct: 4 LIAISRWLAKQHVVTWCVQQEGELWCANAF 33 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 28,207,163 Number of Sequences: 219361 Number of extensions: 349973 Number of successful extensions: 1077 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 1060 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1076 length of database: 80,573,946 effective HSP length: 71 effective length of database: 64,999,315 effective search space used: 1559983560 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
